Wall clock time and date at job start Mon Mar 30 2020 01:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99852 * 2 1 4 4 H 1.48502 * 109.46796 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47144 * 299.99254 * 3 2 1 6 6 H 1.48497 * 109.47500 * 59.99799 * 3 2 1 7 7 C 1.37876 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99754 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99895 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.46753 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99599 * 176.07590 * 10 9 7 12 12 H 1.09001 * 109.47757 * 4.75884 * 11 10 9 13 13 C 1.53007 * 109.47259 * 244.75560 * 11 10 9 14 14 H 1.08999 * 110.35317 * 178.26502 * 13 11 10 15 15 C 1.54944 * 110.30410 * 56.12193 * 13 11 10 16 16 C 1.55308 * 100.93707 * 204.64104 * 15 13 11 17 17 C 1.54374 * 102.25722 * 34.13262 * 16 15 13 18 18 O 1.43245 * 107.58603 * 338.64407 * 17 16 15 19 19 C 1.53006 * 109.46948 * 124.76262 * 11 10 9 20 20 C 1.53002 * 112.85258 * 174.11548 * 19 11 10 21 21 O 1.42893 * 109.47184 * 179.97438 * 20 19 11 22 22 C 1.53776 * 113.61640 * 42.80028 * 19 11 10 23 23 C 1.53775 * 87.08527 * 220.02198 * 22 19 11 24 24 C 1.53787 * 113.60957 * 305.30541 * 19 11 10 25 25 H 0.96998 * 119.99741 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47544 * 60.00355 * 9 7 2 27 27 H 1.08996 * 109.47697 * 299.99520 * 9 7 2 28 28 H 1.00899 * 111.00189 * 52.12687 * 10 9 7 29 29 H 1.08999 * 111.12408 * 86.72284 * 15 13 11 30 30 H 1.08995 * 111.12809 * 322.55533 * 15 13 11 31 31 H 1.09006 * 110.84659 * 275.93821 * 16 15 13 32 32 H 1.09005 * 110.84855 * 152.32779 * 16 15 13 33 33 H 1.09000 * 109.83366 * 98.15264 * 17 16 15 34 34 H 1.08999 * 109.83180 * 219.04148 * 17 16 15 35 35 H 1.09004 * 109.46769 * 299.99702 * 20 19 11 36 36 H 1.08996 * 109.47160 * 59.99358 * 20 19 11 37 37 H 0.96705 * 114.00013 * 179.97438 * 21 20 19 38 38 H 1.09000 * 113.61406 * 334.57395 * 22 19 11 39 39 H 1.09001 * 113.61221 * 105.47438 * 22 19 11 40 40 H 1.09003 * 113.61762 * 270.88644 * 23 22 19 41 41 H 1.08998 * 113.61634 * 139.98111 * 23 22 19 42 42 H 1.08999 * 113.61025 * 254.52767 * 24 19 11 43 43 H 1.08991 * 113.61273 * 25.35220 * 24 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5077 -4.9049 0.0944 12 1 0.4310 -4.7388 0.0577 13 6 1.8736 -5.5882 1.4136 14 1 1.3392 -6.5330 1.5122 15 6 1.5471 -4.6584 2.6093 16 6 2.5309 -5.2010 3.6817 17 6 3.7489 -5.6161 2.8289 18 8 3.2914 -5.8074 1.4850 19 6 1.9262 -5.7978 -1.0755 20 6 1.3550 -7.2137 -0.9764 21 8 1.7885 -7.9820 -2.1005 22 6 3.4349 -5.7593 -1.3708 23 6 3.0634 -5.7712 -2.8629 24 6 1.7199 -5.1453 -2.4528 25 1 -0.4849 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8801 -3.5148 0.7441 29 1 0.5121 -4.7785 2.9291 30 1 1.7637 -3.6177 2.3683 31 1 2.1063 -6.0626 4.1970 32 1 2.8021 -4.4186 4.3906 33 1 4.5033 -4.8298 2.8542 34 1 4.1701 -6.5450 3.2133 35 1 1.7059 -7.6835 -0.0575 36 1 0.2661 -7.1663 -0.9673 37 1 1.4636 -8.8928 -2.1033 38 1 3.9195 -4.8376 -1.0487 39 1 3.9662 -6.6539 -1.0460 40 1 2.9687 -6.7732 -3.2814 41 1 3.6834 -5.1138 -3.4725 42 1 0.8668 -5.5443 -3.0014 43 1 1.7343 -4.0558 -2.4263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576466549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:45 Heat of formation + Delta-G solvation = -73.796225 kcal Electronic energy + Delta-G solvation = -22550.791842 eV Core-core repulsion = 19403.576640 eV Total energy + Delta-G solvation = -3147.215203 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.13378 -38.48870 -35.75193 -34.54013 -32.51556 -31.78042 -30.10249 -27.73462 -26.49590 -24.87303 -24.10282 -22.47204 -21.52927 -21.34987 -20.00429 -17.81446 -17.20672 -16.74409 -16.26350 -15.75337 -15.04687 -14.62822 -14.53324 -14.37836 -14.13876 -13.79637 -13.32042 -12.81073 -12.46755 -12.12336 -12.07803 -11.72536 -11.52773 -11.41157 -11.29789 -11.24737 -11.18019 -10.82266 -10.71911 -10.54603 -10.44123 -9.92737 -9.88576 -9.62736 -9.41474 -9.37659 -9.17244 -8.98075 -8.48214 -7.17465 -6.03774 -4.05145 3.30390 3.38288 3.43337 4.00858 4.37736 4.46445 4.66078 4.88858 5.01988 5.09601 5.21718 5.32304 5.33737 5.42284 5.47093 5.55534 5.62153 5.68337 5.73821 5.79303 5.86263 5.93230 5.99271 6.13202 6.14016 6.27764 6.40192 6.46318 6.55773 6.64803 6.74665 6.90683 7.11811 7.25445 7.30863 7.39358 7.46977 7.80003 7.83329 8.15323 8.45852 8.67205 9.05807 9.60240 11.07201 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016590 B = 0.006640 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.401906 B = 4215.593763 C = 5223.681829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.512 4.512 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.672 5.672 11 C 0.108 3.892 12 H 0.069 0.931 13 C 0.066 3.934 14 H 0.062 0.938 15 C -0.161 4.161 16 C -0.154 4.154 17 C 0.049 3.951 18 O -0.361 6.361 19 C -0.073 4.073 20 C 0.099 3.901 21 O -0.561 6.561 22 C -0.091 4.091 23 C -0.141 4.141 24 C -0.114 4.114 25 H 0.260 0.740 26 H 0.028 0.972 27 H -0.014 1.014 28 H 0.335 0.665 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.045 0.955 36 H 0.039 0.961 37 H 0.366 0.634 38 H 0.093 0.907 39 H 0.048 0.952 40 H 0.084 0.916 41 H 0.049 0.951 42 H 0.047 0.953 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.770 -14.871 3.675 15.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.551 4.551 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.303 5.303 11 C -0.004 4.004 12 H 0.087 0.913 13 C 0.007 3.993 14 H 0.080 0.920 15 C -0.198 4.198 16 C -0.192 4.192 17 C -0.028 4.028 18 O -0.280 6.280 19 C -0.074 4.074 20 C 0.021 3.979 21 O -0.365 6.365 22 C -0.129 4.129 23 C -0.179 4.179 24 C -0.152 4.152 25 H 0.070 0.930 26 H 0.046 0.954 27 H 0.003 0.997 28 H 0.155 0.845 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.211 0.789 38 H 0.111 0.889 39 H 0.066 0.934 40 H 0.102 0.898 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.100 -14.228 2.672 14.805 hybrid contribution -0.515 0.489 1.450 1.615 sum 2.585 -13.740 4.122 14.576 Atomic orbital electron populations 1.69972 1.06033 1.26593 1.51099 1.24965 0.94826 0.99269 0.95396 0.86477 0.80145 0.83549 0.77460 1.19671 1.21030 1.21201 1.21233 0.93509 0.90306 1.50056 0.92004 1.19679 0.90631 0.87365 0.95590 1.60433 1.17912 1.00019 1.51980 1.21375 0.97424 0.91250 0.90346 0.91300 1.23555 0.82496 0.97026 0.96219 0.92035 1.23443 0.99909 1.01855 0.94615 1.23085 0.96251 1.01225 0.98639 1.23080 0.96539 1.00148 0.82999 1.88505 1.21860 1.91148 1.26475 1.21734 0.98506 0.91513 0.95678 1.21903 0.96536 0.91652 0.87777 1.86600 1.76713 1.26593 1.46632 1.22530 0.94130 1.01603 0.94598 1.22884 0.97359 1.00401 0.97207 1.22773 0.96669 1.01247 0.94464 0.93040 0.95432 0.99656 0.84516 0.90378 0.88722 0.91226 0.90232 0.91390 0.92196 0.93724 0.94314 0.78874 0.88887 0.93354 0.89760 0.93243 0.93469 0.88684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.51 -14.17 9.28 -34.44 -0.32 -14.49 16 8 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 9 C 0.19 4.86 4.70 -4.98 -0.02 4.84 16 10 N -0.67 -13.86 3.93 -107.98 -0.42 -14.28 16 11 C 0.11 1.88 1.94 -67.71 -0.13 1.75 16 12 H 0.07 1.28 7.55 -51.93 -0.39 0.89 16 13 C 0.07 0.98 2.60 -25.70 -0.07 0.92 16 14 H 0.06 0.84 6.78 -51.93 -0.35 0.49 16 15 C -0.16 -2.35 6.32 -24.48 -0.15 -2.50 16 16 C -0.15 -1.84 7.02 -24.79 -0.17 -2.01 16 17 C 0.05 0.63 7.79 37.88 0.30 0.92 16 18 O -0.36 -5.56 8.93 -35.23 -0.31 -5.88 16 19 C -0.07 -1.21 0.88 -153.69 -0.14 -1.34 16 20 C 0.10 1.36 6.08 37.16 0.23 1.59 16 21 O -0.56 -7.24 10.54 -35.23 -0.37 -7.61 16 22 C -0.09 -1.57 5.54 -25.92 -0.14 -1.72 16 23 C -0.14 -2.38 7.53 -25.92 -0.20 -2.58 16 24 C -0.11 -2.05 6.93 -25.91 -0.18 -2.23 16 25 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H -0.01 -0.38 7.42 -51.93 -0.39 -0.76 16 28 H 0.34 6.94 6.48 -39.29 -0.25 6.69 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.09 1.67 5.56 -51.93 -0.29 1.39 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.04 0.58 6.73 -51.93 -0.35 0.23 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.37 2.95 9.12 45.56 0.42 3.36 16 38 H 0.09 1.79 7.04 -51.93 -0.37 1.42 16 39 H 0.05 0.83 8.10 -51.93 -0.42 0.40 16 40 H 0.08 1.38 6.15 -51.93 -0.32 1.06 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 43 H 0.09 1.98 7.50 -51.93 -0.39 1.59 16 LS Contribution 327.40 15.07 4.93 4.93 Total: -1.00 -29.95 327.40 -8.01 -37.96 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -6.45 Total: 9.33 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -1.10 Total: -15.35 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.31 Total: -39.96 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -0.69 Total: -13.49 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.95 -8.01 -37.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576466549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.835 kcal (2) G-P(sol) polarization free energy of solvation -29.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds