Wall clock time and date at job start Mon Mar 30 2020 01:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99852 * 2 1 4 4 H 1.48502 * 109.46796 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47144 * 299.99254 * 3 2 1 6 6 H 1.48497 * 109.47500 * 59.99799 * 3 2 1 7 7 C 1.37876 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99754 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99895 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.46753 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99599 * 176.07590 * 10 9 7 12 12 H 1.09001 * 109.47757 * 4.75884 * 11 10 9 13 13 C 1.53007 * 109.47259 * 244.75560 * 11 10 9 14 14 H 1.08999 * 110.35317 * 178.26502 * 13 11 10 15 15 C 1.54944 * 110.30410 * 56.12193 * 13 11 10 16 16 C 1.55308 * 100.93707 * 204.64104 * 15 13 11 17 17 C 1.54374 * 102.25722 * 34.13262 * 16 15 13 18 18 O 1.43245 * 107.58603 * 338.64407 * 17 16 15 19 19 C 1.53006 * 109.46948 * 124.76262 * 11 10 9 20 20 C 1.53002 * 112.85258 * 174.11548 * 19 11 10 21 21 O 1.42893 * 109.47184 * 179.97438 * 20 19 11 22 22 C 1.53776 * 113.61640 * 42.80028 * 19 11 10 23 23 C 1.53775 * 87.08527 * 220.02198 * 22 19 11 24 24 C 1.53787 * 113.60957 * 305.30541 * 19 11 10 25 25 H 0.96998 * 119.99741 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47544 * 60.00355 * 9 7 2 27 27 H 1.08996 * 109.47697 * 299.99520 * 9 7 2 28 28 H 1.00899 * 111.00189 * 52.12687 * 10 9 7 29 29 H 1.08999 * 111.12408 * 86.72284 * 15 13 11 30 30 H 1.08995 * 111.12809 * 322.55533 * 15 13 11 31 31 H 1.09006 * 110.84659 * 275.93821 * 16 15 13 32 32 H 1.09005 * 110.84855 * 152.32779 * 16 15 13 33 33 H 1.09000 * 109.83366 * 98.15264 * 17 16 15 34 34 H 1.08999 * 109.83180 * 219.04148 * 17 16 15 35 35 H 1.09004 * 109.46769 * 299.99702 * 20 19 11 36 36 H 1.08996 * 109.47160 * 59.99358 * 20 19 11 37 37 H 0.96705 * 114.00013 * 179.97438 * 21 20 19 38 38 H 1.09000 * 113.61406 * 334.57395 * 22 19 11 39 39 H 1.09001 * 113.61221 * 105.47438 * 22 19 11 40 40 H 1.09003 * 113.61762 * 270.88644 * 23 22 19 41 41 H 1.08998 * 113.61634 * 139.98111 * 23 22 19 42 42 H 1.08999 * 113.61025 * 254.52767 * 24 19 11 43 43 H 1.08991 * 113.61273 * 25.35220 * 24 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5077 -4.9049 0.0944 12 1 0.4310 -4.7388 0.0577 13 6 1.8736 -5.5882 1.4136 14 1 1.3392 -6.5330 1.5122 15 6 1.5471 -4.6584 2.6093 16 6 2.5309 -5.2010 3.6817 17 6 3.7489 -5.6161 2.8289 18 8 3.2914 -5.8074 1.4850 19 6 1.9262 -5.7978 -1.0755 20 6 1.3550 -7.2137 -0.9764 21 8 1.7885 -7.9820 -2.1005 22 6 3.4349 -5.7593 -1.3708 23 6 3.0634 -5.7712 -2.8629 24 6 1.7199 -5.1453 -2.4528 25 1 -0.4849 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8801 -3.5148 0.7441 29 1 0.5121 -4.7785 2.9291 30 1 1.7637 -3.6177 2.3683 31 1 2.1063 -6.0626 4.1970 32 1 2.8021 -4.4186 4.3906 33 1 4.5033 -4.8298 2.8542 34 1 4.1701 -6.5450 3.2133 35 1 1.7059 -7.6835 -0.0575 36 1 0.2661 -7.1663 -0.9673 37 1 1.4636 -8.8928 -2.1033 38 1 3.9195 -4.8376 -1.0487 39 1 3.9662 -6.6539 -1.0460 40 1 2.9687 -6.7732 -3.2814 41 1 3.6834 -5.1138 -3.4725 42 1 0.8668 -5.5443 -3.0014 43 1 1.7343 -4.0558 -2.4263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576466549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:44 Heat of formation + Delta-G solvation = -94.584463 kcal Electronic energy + Delta-G solvation = -22551.693288 eV Core-core repulsion = 19403.576640 eV Total energy + Delta-G solvation = -3148.116648 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.42871 -39.68195 -37.00502 -36.10274 -34.48873 -32.89228 -31.65937 -28.89048 -28.33907 -26.31882 -25.60228 -23.69799 -23.45497 -22.43620 -21.35307 -19.18171 -18.62156 -18.17201 -17.70822 -17.07949 -16.63743 -16.25898 -15.71146 -15.60221 -15.53753 -15.25382 -14.72552 -14.21788 -14.14656 -13.66397 -13.52417 -13.16615 -13.03565 -12.82711 -12.72716 -12.71620 -12.56274 -12.46119 -12.22529 -12.00201 -11.82429 -11.69915 -11.28902 -11.03306 -10.88177 -10.80090 -10.61345 -10.58973 -10.27883 -8.90949 -8.21771 -6.31359 1.38526 1.40256 1.53214 2.39419 2.86690 3.11993 3.30851 3.52022 3.68069 3.81200 3.94568 4.01321 4.08972 4.15998 4.26353 4.32461 4.36217 4.42152 4.56463 4.63530 4.75692 4.82627 4.88615 4.92242 4.98216 5.00879 5.10104 5.11130 5.18798 5.23046 5.29515 5.31520 5.37173 5.44046 5.63055 5.74528 5.98120 6.06584 6.17580 6.55170 6.79958 6.96121 7.06962 7.39626 8.89637 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016590 B = 0.006640 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.401906 B = 4215.593763 C = 5223.681829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.217 3.783 10 N -0.667 5.667 11 C 0.104 3.896 12 H 0.054 0.946 13 C 0.074 3.926 14 H 0.088 0.912 15 C -0.165 4.165 16 C -0.142 4.142 17 C 0.043 3.957 18 O -0.378 6.378 19 C -0.068 4.068 20 C 0.107 3.893 21 O -0.574 6.574 22 C -0.085 4.085 23 C -0.131 4.131 24 C -0.121 4.121 25 H 0.264 0.736 26 H -0.006 1.006 27 H -0.034 1.034 28 H 0.335 0.665 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.390 0.610 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.098 0.902 41 H 0.044 0.956 42 H 0.052 0.948 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.550 -16.491 4.592 17.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.193 4.193 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.569 4.569 8 H 0.076 0.924 9 C 0.089 3.911 10 N -0.299 5.299 11 C -0.007 4.007 12 H 0.072 0.928 13 C 0.016 3.984 14 H 0.106 0.894 15 C -0.203 4.203 16 C -0.180 4.180 17 C -0.033 4.033 18 O -0.297 6.297 19 C -0.069 4.069 20 C 0.029 3.971 21 O -0.382 6.382 22 C -0.122 4.122 23 C -0.168 4.168 24 C -0.159 4.159 25 H 0.072 0.928 26 H 0.012 0.988 27 H -0.016 1.016 28 H 0.154 0.846 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.240 0.760 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.116 0.884 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.887 -15.886 3.592 16.744 hybrid contribution -0.766 0.945 1.133 1.662 sum 3.121 -14.941 4.724 15.978 Atomic orbital electron populations 1.70089 1.07598 1.27714 1.51797 1.25843 0.95694 1.02989 0.94785 0.85387 0.78948 0.78882 0.77705 1.18978 1.20628 1.20208 1.21553 0.93521 0.91693 1.50112 0.92359 1.19225 0.90448 0.88485 0.92916 1.60308 1.17129 1.00365 1.52055 1.21411 0.96233 0.90135 0.92948 0.92839 1.23434 0.82950 0.97721 0.94328 0.89436 1.23389 1.01255 0.99728 0.95887 1.23064 0.94944 1.02193 0.97791 1.23261 0.96723 1.01352 0.81954 1.88476 1.21779 1.91150 1.28332 1.21755 0.97978 0.93250 0.93896 1.21734 0.96911 0.89726 0.88690 1.86506 1.77067 1.28441 1.46196 1.22366 0.94479 1.00555 0.94833 1.22844 0.96198 1.00774 0.96982 1.22682 0.97739 0.99096 0.96368 0.92750 0.98790 1.01613 0.84556 0.89599 0.92507 0.88685 0.89613 0.91912 0.89684 0.92233 0.93229 0.76036 0.91407 0.92658 0.88403 0.93707 0.92956 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.26 13.29 21.45 0.28 -55.97 16 2 C 0.01 0.29 5.46 84.65 0.46 0.76 16 3 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.53 -30.37 9.28 25.60 0.24 -30.14 16 8 H 0.06 3.31 7.81 -2.91 -0.02 3.28 16 9 C 0.22 11.51 4.70 85.55 0.40 11.91 16 10 N -0.67 -28.79 3.93 -495.54 -1.95 -30.73 16 11 C 0.10 3.68 1.94 44.92 0.09 3.76 16 12 H 0.05 2.06 7.55 -2.39 -0.02 2.04 16 13 C 0.07 2.13 2.60 31.26 0.08 2.21 16 14 H 0.09 2.12 6.78 -2.39 -0.02 2.11 16 15 C -0.16 -4.73 6.32 32.05 0.20 -4.53 16 16 C -0.14 -3.06 7.02 31.85 0.22 -2.84 16 17 C 0.04 1.01 7.79 72.45 0.56 1.57 16 18 O -0.38 -11.04 8.93 -148.98 -1.33 -12.37 16 19 C -0.07 -2.20 0.88 -51.65 -0.05 -2.24 16 20 C 0.11 2.67 6.08 71.98 0.44 3.10 16 21 O -0.57 -13.06 10.54 -148.98 -1.57 -14.63 16 22 C -0.08 -2.88 5.54 31.12 0.17 -2.71 16 23 C -0.13 -4.34 7.53 31.12 0.23 -4.11 16 24 C -0.12 -4.43 6.93 31.12 0.22 -4.22 16 25 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 26 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 27 H -0.03 -1.89 7.42 -2.39 -0.02 -1.90 16 28 H 0.34 14.44 6.48 -89.69 -0.58 13.85 16 29 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.06 2.07 5.56 -2.39 -0.01 2.06 16 31 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 1.33 6.73 -2.39 -0.02 1.31 16 36 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.39 4.85 9.12 -74.05 -0.68 4.17 16 38 H 0.07 2.65 7.04 -2.39 -0.02 2.63 16 39 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 40 H 0.10 3.02 6.15 -2.39 -0.01 3.01 16 41 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.05 1.81 8.10 -2.39 -0.02 1.80 16 43 H 0.06 2.52 7.50 -2.39 -0.02 2.50 16 Total: -1.00 -66.14 327.40 0.48 -65.66 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: -0.25 Total: 28.63 kcal Atomic # 6 Polarization: -30.74 SS G_CDS: 3.28 Total: -27.46 kcal Atomic # 7 Polarization: -85.04 SS G_CDS: -1.66 Total: -86.71 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -2.90 Total: -26.99 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -66.14 0.48 -65.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576466549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.928 kcal (2) G-P(sol) polarization free energy of solvation -66.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds