Wall clock time and date at job start Mon Mar 30 2020 01:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99779 * 2 1 4 4 H 1.48499 * 109.46797 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46919 * 300.00118 * 3 2 1 6 6 H 1.48495 * 109.47074 * 60.00083 * 3 2 1 7 7 C 1.37871 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00368 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99921 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.46910 * 180.02562 * 9 7 2 11 11 C 1.46903 * 110.99686 * 185.09702 * 10 9 7 12 12 H 1.09004 * 109.46960 * 23.34484 * 11 10 9 13 13 C 1.52999 * 109.46845 * 263.34347 * 11 10 9 14 14 C 1.52998 * 117.49671 * 131.71220 * 13 11 10 15 15 C 1.53003 * 117.49966 * 63.05349 * 13 11 10 16 16 C 1.53001 * 109.47014 * 143.34471 * 11 10 9 17 17 C 1.52995 * 109.54363 * 60.17693 * 16 11 10 18 18 O 1.42900 * 109.47161 * 294.40607 * 17 16 11 19 19 C 1.53180 * 109.54119 * 180.43193 * 16 11 10 20 20 C 1.53094 * 109.15969 * 176.83586 * 19 16 11 21 21 O 1.42905 * 109.42365 * 302.40642 * 20 19 16 22 22 C 1.42899 * 114.09706 * 61.15255 * 21 20 19 23 23 C 1.53086 * 109.41672 * 298.84178 * 22 21 20 24 24 H 0.97001 * 120.00017 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.46738 * 60.00260 * 9 7 2 26 26 H 1.09004 * 109.47311 * 300.00416 * 9 7 2 27 27 H 1.00900 * 110.99761 * 309.04721 * 10 9 7 28 28 H 1.08994 * 115.54894 * 277.37358 * 13 11 10 29 29 H 1.09001 * 117.50412 * 359.97438 * 14 13 11 30 30 H 1.09000 * 117.50009 * 145.01916 * 14 13 11 31 31 H 1.09003 * 117.49538 * 214.97661 * 15 13 11 32 32 H 1.09002 * 117.49630 * 359.97438 * 15 13 11 33 33 H 1.08997 * 109.47261 * 54.40685 * 17 16 11 34 34 H 1.09003 * 109.47262 * 174.40806 * 17 16 11 35 35 H 0.96697 * 114.00435 * 180.02562 * 18 17 16 36 36 H 1.09006 * 109.51596 * 56.93765 * 19 16 11 37 37 H 1.08994 * 109.53108 * 296.74719 * 19 16 11 38 38 H 1.09006 * 109.47947 * 182.41904 * 20 19 16 39 39 H 1.08996 * 109.48138 * 62.39893 * 20 19 16 40 40 H 1.09000 * 109.48283 * 58.82612 * 22 21 20 41 41 H 1.08998 * 109.47911 * 178.84567 * 22 21 20 42 42 H 1.09005 * 109.52272 * 177.51708 * 23 22 21 43 43 H 1.09003 * 109.52386 * 297.70142 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 1.5095 -4.9035 -0.1224 12 1 0.5364 -4.7478 -0.5882 13 6 1.3179 -5.5131 1.2678 14 6 -0.0759 -6.0332 1.6250 15 6 0.4469 -4.7435 2.2628 16 6 2.3420 -5.8536 -0.9856 17 6 3.7068 -6.0767 -0.3310 18 8 4.4395 -4.8499 -0.3272 19 6 1.6124 -7.1935 -1.1227 20 6 2.4138 -8.1092 -2.0516 21 8 2.5833 -7.4703 -3.3185 22 6 3.3007 -6.2359 -3.2581 23 6 2.5349 -5.2448 -2.3779 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8917 -3.5048 -0.7321 28 1 2.1750 -6.0570 1.6648 29 1 -0.8565 -5.9406 0.8699 30 1 -0.1358 -6.9189 2.2575 31 1 0.7308 -4.7814 3.3145 32 1 0.0107 -3.8027 1.9270 33 1 3.5664 -6.4192 0.6942 34 1 4.2606 -6.8289 -0.8928 35 1 5.3170 -4.9170 0.0735 36 1 0.6204 -7.0267 -1.5426 37 1 1.5201 -7.6601 -0.1420 38 1 1.8777 -9.0486 -2.1870 39 1 3.3908 -8.3085 -1.6114 40 1 4.2893 -6.4104 -2.8336 41 1 3.4037 -5.8258 -4.2628 42 1 3.1021 -4.3177 -2.2948 43 1 1.5616 -5.0386 -2.8233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582241462.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:38 Heat of formation + Delta-G solvation = -92.674319 kcal Electronic energy + Delta-G solvation = -22556.076894 eV Core-core repulsion = 19408.043076 eV Total energy + Delta-G solvation = -3148.033818 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.50879 -38.88465 -37.26718 -35.98881 -35.01917 -33.69212 -32.01631 -29.55176 -27.63677 -26.33348 -24.78893 -24.13573 -23.35979 -22.94776 -21.13981 -19.63404 -18.55501 -18.10849 -17.49820 -16.91273 -16.57707 -16.34815 -16.31095 -15.71614 -15.56036 -15.09399 -14.76315 -14.61837 -14.21508 -13.94815 -13.49240 -13.35450 -13.18294 -13.07807 -12.73894 -12.61454 -12.48483 -12.30256 -12.24610 -12.01968 -11.81002 -11.48271 -11.22852 -11.07117 -10.93911 -10.79720 -10.63820 -10.58698 -10.18038 -8.83920 -8.21725 -6.31884 1.38255 1.39224 1.53415 2.39375 2.94211 2.98566 3.11279 3.34349 3.52506 3.69214 3.87424 3.98980 4.10878 4.12686 4.23768 4.29208 4.33227 4.38905 4.41274 4.47329 4.69217 4.70879 4.76458 4.79969 4.83654 4.85126 4.94173 5.04368 5.07529 5.16172 5.18843 5.27688 5.31240 5.34994 5.39335 5.55214 5.65057 6.09599 6.28197 6.61760 6.85099 7.05275 7.23963 7.39997 8.90311 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019873 B = 0.005977 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.630605 B = 4683.547801 C = 5360.850081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.001 4.001 3 Si 0.972 3.028 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.529 4.529 8 H 0.061 0.939 9 C 0.209 3.791 10 N -0.660 5.660 11 C 0.128 3.872 12 H 0.003 0.997 13 C -0.124 4.124 14 C -0.165 4.165 15 C -0.194 4.194 16 C -0.056 4.056 17 C 0.093 3.907 18 O -0.572 6.572 19 C -0.135 4.135 20 C 0.057 3.943 21 O -0.402 6.402 22 C 0.072 3.928 23 C -0.145 4.145 24 H 0.263 0.737 25 H -0.062 1.062 26 H 0.007 0.993 27 H 0.343 0.657 28 H 0.120 0.880 29 H 0.078 0.922 30 H 0.122 0.878 31 H 0.098 0.902 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.388 0.612 36 H 0.059 0.941 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.097 0.903 42 H 0.066 0.934 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.710 -18.507 -0.925 20.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.199 4.199 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.567 4.567 8 H 0.079 0.921 9 C 0.081 3.919 10 N -0.295 5.295 11 C 0.018 3.982 12 H 0.021 0.979 13 C -0.143 4.143 14 C -0.202 4.202 15 C -0.231 4.231 16 C -0.057 4.057 17 C 0.016 3.984 18 O -0.379 6.379 19 C -0.173 4.173 20 C -0.019 4.019 21 O -0.321 6.321 22 C -0.005 4.005 23 C -0.183 4.183 24 H 0.072 0.928 25 H -0.044 1.044 26 H 0.025 0.975 27 H 0.166 0.834 28 H 0.137 0.863 29 H 0.097 0.903 30 H 0.140 0.860 31 H 0.117 0.883 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.236 0.764 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.130 0.870 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.115 0.885 42 H 0.085 0.915 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.022 -18.274 -0.722 19.590 hybrid contribution -0.100 1.502 -0.388 1.554 sum 6.923 -16.772 -1.110 18.178 Atomic orbital electron populations 1.70117 1.07851 1.27711 1.52065 1.25961 0.95757 1.03373 0.94782 0.85299 0.78998 0.78377 0.77705 1.18586 1.20401 1.20327 1.21599 0.93611 0.91652 1.49827 0.92074 1.19346 0.90824 0.89435 0.92280 1.60513 1.15549 0.99792 1.53602 1.21050 0.93960 0.90110 0.93076 0.97916 1.22288 0.94325 1.02322 0.95349 1.23068 0.96308 0.97592 1.03225 1.22842 1.05935 0.95571 0.98736 1.20799 0.95490 0.95654 0.93753 1.22202 0.90586 0.86365 0.99270 1.86549 1.33486 1.33436 1.84390 1.22144 0.99062 0.94186 1.01936 1.22833 1.00109 0.95587 0.83400 1.87893 1.77072 1.36246 1.30860 1.22533 0.94176 0.83386 1.00395 1.22157 1.00426 0.99963 0.95762 0.92806 1.04413 0.97491 0.83443 0.86272 0.90330 0.85980 0.88312 0.92324 0.92540 0.92180 0.76350 0.92265 0.88359 0.86963 0.91248 0.91397 0.88536 0.91526 0.94075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.00 13.29 21.44 0.28 -58.72 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 3 Si 0.97 46.03 29.54 68.60 2.03 48.05 16 4 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.53 -31.65 9.26 25.60 0.24 -31.41 16 8 H 0.06 3.59 7.81 -2.91 -0.02 3.56 16 9 C 0.21 11.87 5.16 85.56 0.44 12.31 16 10 N -0.66 -29.71 5.35 -495.55 -2.65 -32.36 16 11 C 0.13 4.70 1.58 44.92 0.07 4.77 16 12 H 0.00 0.12 7.35 -2.38 -0.02 0.11 16 13 C -0.12 -3.90 3.96 -10.79 -0.04 -3.94 16 14 C -0.16 -4.56 10.15 30.62 0.31 -4.25 16 15 C -0.19 -6.88 9.93 30.62 0.30 -6.58 16 16 C -0.06 -1.56 0.28 -52.06 -0.01 -1.57 16 17 C 0.09 2.11 5.20 71.98 0.37 2.48 16 18 O -0.57 -15.21 10.11 -148.98 -1.51 -16.71 16 19 C -0.14 -2.97 4.62 30.69 0.14 -2.83 16 20 C 0.06 1.04 6.57 72.01 0.47 1.52 16 21 O -0.40 -9.81 10.77 -148.98 -1.60 -11.41 16 22 C 0.07 1.71 6.57 72.01 0.47 2.19 16 23 C -0.14 -4.42 4.52 30.68 0.14 -4.28 16 24 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 25 H -0.06 -3.89 7.94 -2.39 -0.02 -3.90 16 26 H 0.01 0.44 5.60 -2.39 -0.01 0.43 16 27 H 0.34 15.37 4.47 -89.69 -0.40 14.97 16 28 H 0.12 3.20 6.03 -2.39 -0.01 3.19 16 29 H 0.08 2.32 8.07 -2.39 -0.02 2.30 16 30 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 32 H 0.06 2.65 5.76 -2.39 -0.01 2.63 16 33 H 0.06 1.19 5.96 -2.39 -0.01 1.17 16 34 H 0.06 1.06 5.05 -2.39 -0.01 1.04 16 35 H 0.39 6.82 9.12 -74.06 -0.68 6.14 16 36 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.10 1.78 7.33 -2.39 -0.02 1.77 16 38 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.07 1.02 6.49 -2.39 -0.02 1.00 16 40 H 0.07 1.40 6.73 -2.39 -0.02 1.38 16 41 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.07 2.32 5.89 -2.38 -0.01 2.30 16 43 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -72.45 320.37 -0.13 -72.58 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: -0.05 Total: 29.77 kcal Atomic # 6 Polarization: -34.57 SS G_CDS: 3.37 Total: -31.20 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -2.37 Total: -91.08 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -3.11 Total: -28.12 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -72.45 -0.13 -72.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582241462.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.094 kcal (2) G-P(sol) polarization free energy of solvation -72.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds