Wall clock time and date at job start Mon Mar 30 2020 01:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 180.02562 * 12 11 10 14 14 O 1.21279 * 120.00251 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00115 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00376 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47473 * 179.97438 * 16 15 13 18 18 H 1.09004 * 109.52046 * 305.00160 * 17 16 15 19 19 C 1.53175 * 109.52630 * 184.87615 * 17 16 15 20 20 C 1.53184 * 109.03459 * 183.17726 * 19 17 16 21 21 C 1.53094 * 109.21476 * 56.88609 * 20 19 17 22 22 O 1.42908 * 109.41076 * 302.42737 * 21 20 19 23 23 C 1.42894 * 114.10321 * 61.15685 * 22 21 20 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 30 30 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 31 31 H 1.09002 * 109.47153 * 300.00216 * 12 11 10 32 32 H 1.09001 * 109.47289 * 60.00300 * 12 11 10 33 33 H 0.97004 * 120.00228 * 359.97438 * 15 13 12 34 34 H 1.09002 * 109.47129 * 300.00253 * 16 15 13 35 35 H 1.09001 * 109.46596 * 59.99898 * 16 15 13 36 36 H 1.09004 * 109.54076 * 302.98280 * 19 17 16 37 37 H 1.08999 * 109.54342 * 63.24452 * 19 17 16 38 38 H 1.08997 * 109.46615 * 296.97878 * 20 19 17 39 39 H 1.08997 * 109.57478 * 176.85677 * 20 19 17 40 40 H 1.08998 * 109.48091 * 182.44264 * 21 20 19 41 41 H 1.08997 * 109.48782 * 62.41021 * 21 20 19 42 42 H 1.09000 * 109.48501 * 178.85339 * 23 22 21 43 43 H 1.09006 * 109.48652 * 58.82897 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 2.4743 -6.1500 0.0005 13 6 1.7207 -7.4551 0.0005 14 8 0.5079 -7.4551 0.0015 15 7 2.3945 -8.6224 0.0005 16 6 1.6621 -9.8911 0.0011 17 6 2.6562 -11.0540 0.0003 18 1 3.3402 -10.9480 -0.8418 19 6 1.8954 -12.3779 -0.1218 20 6 2.8937 -13.5370 -0.0415 21 6 3.6792 -13.4356 1.2686 22 8 4.3378 -12.1689 1.3306 23 6 3.4511 -11.0485 1.3088 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.8718 -3.6044 -0.8895 28 1 2.8718 -3.6044 0.8904 29 1 0.8537 -5.0445 0.8914 30 1 0.8532 -5.0451 -0.8886 31 1 3.1003 -6.0924 -0.8899 32 1 3.1016 -6.0923 0.8901 33 1 3.3646 -8.6225 0.0002 34 1 1.0357 -9.9486 0.8913 35 1 1.0351 -9.9489 -0.8887 36 1 1.1753 -12.4610 0.6922 37 1 1.3726 -12.4111 -1.0776 38 1 3.5825 -13.4822 -0.8845 39 1 2.3560 -14.4847 -0.0715 40 1 4.4208 -14.2333 1.3104 41 1 2.9947 -13.5311 2.1114 42 1 4.0282 -10.1266 1.3797 43 1 2.7634 -11.1125 2.1521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588152745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:24 Heat of formation + Delta-G solvation = -126.720573 kcal Electronic energy + Delta-G solvation = -19947.209662 eV Core-core repulsion = 16797.699488 eV Total energy + Delta-G solvation = -3149.510175 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.21258 -39.31789 -35.86767 -34.81890 -33.73256 -32.61072 -31.67644 -29.70388 -26.84393 -25.53444 -25.22345 -22.85997 -21.89873 -20.84333 -20.06561 -19.91778 -17.08432 -16.75781 -16.33712 -16.18642 -15.95556 -15.74911 -15.27032 -14.77561 -14.43797 -14.20852 -13.94333 -13.51768 -13.16595 -13.07984 -12.59941 -12.42377 -12.06711 -11.71148 -11.65596 -11.59756 -11.51761 -11.21918 -10.94950 -10.78344 -10.52133 -10.50268 -10.38442 -9.92880 -9.80652 -9.58709 -9.19860 -9.18631 -8.96839 -8.28341 -5.93206 -3.95717 2.73622 3.09273 3.36741 3.40752 3.40981 3.43324 4.21500 4.26783 4.32913 4.44029 4.50585 4.66166 4.82333 4.92995 4.95648 5.14082 5.18208 5.23753 5.28885 5.34909 5.39379 5.42155 5.47096 5.52875 5.57618 5.64153 5.82363 5.89820 6.16477 6.28842 6.33641 6.57403 6.73076 6.86619 7.04585 7.22440 7.41825 7.76020 7.92454 8.08278 8.26613 8.50032 9.11800 9.67675 11.18076 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.056790 B = 0.002308 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.927901 B =12130.108970 C =12463.094024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.139 4.139 13 C 0.512 3.488 14 O -0.535 6.535 15 N -0.741 5.741 16 C 0.126 3.874 17 C -0.135 4.135 18 H 0.087 0.913 19 C -0.116 4.116 20 C -0.155 4.155 21 C 0.058 3.942 22 O -0.382 6.382 23 C 0.064 3.936 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.399 0.601 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.051 0.949 42 H 0.095 0.905 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.872 -28.801 0.849 29.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.179 4.179 13 C 0.299 3.701 14 O -0.411 6.411 15 N -0.395 5.395 16 C 0.002 3.998 17 C -0.154 4.154 18 H 0.105 0.895 19 C -0.154 4.154 20 C -0.193 4.193 21 C -0.019 4.019 22 O -0.300 6.300 23 C -0.012 4.012 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.234 0.766 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.069 0.931 42 H 0.113 0.887 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.011 -28.657 0.863 29.515 hybrid contribution 0.588 0.849 -0.083 1.036 sum 7.599 -27.808 0.780 28.838 Atomic orbital electron populations 1.69966 1.06041 1.26597 1.50871 1.25048 0.94857 0.99233 0.95489 0.86665 0.79561 0.83240 0.78538 1.20298 1.21337 1.20288 1.21250 0.92942 0.91214 1.50475 0.92807 1.19095 0.94069 0.91271 0.97303 1.21648 0.99072 0.94010 1.00066 1.21449 0.97026 0.92725 1.02937 1.21800 1.00099 0.91997 1.04005 1.21120 0.88450 0.85587 0.74934 1.90708 1.14276 1.87696 1.48408 1.46144 1.10249 1.05702 1.77383 1.21270 0.94087 0.81783 1.02697 1.22059 0.98114 0.95117 1.00116 0.89482 1.21566 0.97717 0.93034 1.03057 1.22186 0.98899 0.99005 0.99231 1.22610 0.96909 0.86083 0.96304 1.87956 1.33527 1.13971 1.94549 1.22663 0.93233 0.89622 0.95729 0.93004 0.96592 0.96608 0.93480 0.93478 0.91819 0.91837 0.89132 0.89115 0.76628 0.91420 0.91210 0.91323 0.90880 0.90916 0.90617 0.88843 0.93105 0.88707 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.72 13.29 55.43 0.74 -26.98 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.30 5.15 -26.74 -0.14 -2.43 16 11 C -0.10 -1.87 4.50 -26.74 -0.12 -1.99 16 12 C -0.14 -1.84 5.70 -27.88 -0.16 -2.00 16 13 C 0.51 7.06 7.83 -10.98 -0.09 6.97 16 14 O -0.54 -9.78 15.98 5.56 0.09 -9.69 16 15 N -0.74 -7.14 5.31 -60.29 -0.32 -7.46 16 16 C 0.13 1.11 5.07 -4.04 -0.02 1.08 16 17 C -0.13 -0.89 2.42 -90.48 -0.22 -1.11 16 18 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 19 C -0.12 -0.67 5.32 -26.55 -0.14 -0.81 16 20 C -0.16 -0.80 6.13 -26.59 -0.16 -0.97 16 21 C 0.06 0.34 6.84 37.21 0.25 0.60 16 22 O -0.38 -3.21 10.76 -35.23 -0.38 -3.59 16 23 C 0.06 0.46 5.97 37.21 0.22 0.68 16 24 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 30 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.40 2.76 7.68 -40.82 -0.31 2.44 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.09 0.61 7.26 -51.93 -0.38 0.23 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 348.15 15.07 5.25 5.25 Total: -1.00 -34.38 348.15 -8.61 -42.98 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -7.84 Total: -4.02 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -1.12 Total: -13.51 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.42 Total: -34.45 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.29 Total: -13.28 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.38 -8.61 -42.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588152745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.737 kcal (2) G-P(sol) polarization free energy of solvation -34.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds