Wall clock time and date at job start Mon Mar 30 2020 01:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 180.02562 * 12 11 10 14 14 O 1.21279 * 120.00251 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00115 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00376 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47473 * 179.97438 * 16 15 13 18 18 H 1.09004 * 109.52046 * 305.00160 * 17 16 15 19 19 C 1.53175 * 109.52630 * 184.87615 * 17 16 15 20 20 C 1.53184 * 109.03459 * 183.17726 * 19 17 16 21 21 C 1.53094 * 109.21476 * 56.88609 * 20 19 17 22 22 O 1.42908 * 109.41076 * 302.42737 * 21 20 19 23 23 C 1.42894 * 114.10321 * 61.15685 * 22 21 20 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 30 30 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 31 31 H 1.09002 * 109.47153 * 300.00216 * 12 11 10 32 32 H 1.09001 * 109.47289 * 60.00300 * 12 11 10 33 33 H 0.97004 * 120.00228 * 359.97438 * 15 13 12 34 34 H 1.09002 * 109.47129 * 300.00253 * 16 15 13 35 35 H 1.09001 * 109.46596 * 59.99898 * 16 15 13 36 36 H 1.09004 * 109.54076 * 302.98280 * 19 17 16 37 37 H 1.08999 * 109.54342 * 63.24452 * 19 17 16 38 38 H 1.08997 * 109.46615 * 296.97878 * 20 19 17 39 39 H 1.08997 * 109.57478 * 176.85677 * 20 19 17 40 40 H 1.08998 * 109.48091 * 182.44264 * 21 20 19 41 41 H 1.08997 * 109.48782 * 62.41021 * 21 20 19 42 42 H 1.09000 * 109.48501 * 178.85339 * 23 22 21 43 43 H 1.09006 * 109.48652 * 58.82897 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 2.4743 -6.1500 0.0005 13 6 1.7207 -7.4551 0.0005 14 8 0.5079 -7.4551 0.0015 15 7 2.3945 -8.6224 0.0005 16 6 1.6621 -9.8911 0.0011 17 6 2.6562 -11.0540 0.0003 18 1 3.3402 -10.9480 -0.8418 19 6 1.8954 -12.3779 -0.1218 20 6 2.8937 -13.5370 -0.0415 21 6 3.6792 -13.4356 1.2686 22 8 4.3378 -12.1689 1.3306 23 6 3.4511 -11.0485 1.3088 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.8718 -3.6044 -0.8895 28 1 2.8718 -3.6044 0.8904 29 1 0.8537 -5.0445 0.8914 30 1 0.8532 -5.0451 -0.8886 31 1 3.1003 -6.0924 -0.8899 32 1 3.1016 -6.0923 0.8901 33 1 3.3646 -8.6225 0.0002 34 1 1.0357 -9.9486 0.8913 35 1 1.0351 -9.9489 -0.8887 36 1 1.1753 -12.4610 0.6922 37 1 1.3726 -12.4111 -1.0776 38 1 3.5825 -13.4822 -0.8845 39 1 2.3560 -14.4847 -0.0715 40 1 4.4208 -14.2333 1.3104 41 1 2.9947 -13.5311 2.1114 42 1 4.0282 -10.1266 1.3797 43 1 2.7634 -11.1125 2.1521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588152745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:23 Heat of formation + Delta-G solvation = -149.761514 kcal Electronic energy + Delta-G solvation = -19948.208793 eV Core-core repulsion = 16797.699488 eV Total energy + Delta-G solvation = -3150.509305 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.02291 -40.14005 -36.86309 -36.37430 -34.61414 -34.36075 -32.42232 -31.31453 -28.05136 -26.64834 -26.02361 -24.20896 -22.89031 -21.80962 -21.51617 -20.83057 -18.41417 -18.00589 -17.36904 -17.06096 -16.83994 -16.80647 -16.47436 -15.97112 -15.50542 -15.24384 -14.87299 -14.53753 -14.36315 -14.05419 -13.62453 -13.58832 -13.52436 -13.26906 -12.93080 -12.77247 -12.37227 -12.19780 -12.14936 -12.11140 -12.05265 -11.74779 -11.36528 -11.34992 -11.27108 -11.16756 -10.74874 -10.53877 -10.45976 -10.10366 -8.18004 -6.30264 1.40652 1.44850 1.52656 1.65899 2.19984 2.42675 2.90958 3.14413 3.67154 3.73366 3.78597 3.88739 4.00660 4.07484 4.16430 4.21739 4.32275 4.48016 4.54711 4.63389 4.67725 4.70757 4.74654 4.80051 4.86328 4.89037 4.94052 5.00953 5.08008 5.17211 5.20580 5.33653 5.34385 5.37598 5.46360 5.58160 5.78979 5.88754 6.23023 6.25926 6.54771 6.88041 7.27635 7.39171 8.94000 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.056790 B = 0.002308 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.927901 B =12130.108970 C =12463.094024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.018 3.982 10 C -0.096 4.096 11 C -0.096 4.096 12 C -0.129 4.129 13 C 0.511 3.489 14 O -0.589 6.589 15 N -0.720 5.720 16 C 0.127 3.873 17 C -0.122 4.122 18 H 0.091 0.909 19 C -0.118 4.118 20 C -0.151 4.151 21 C 0.051 3.949 22 O -0.401 6.401 23 C 0.062 3.938 24 H 0.263 0.737 25 H -0.016 1.016 26 H -0.016 1.016 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.417 0.583 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.055 0.945 42 H 0.101 0.899 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.477 -29.550 0.779 31.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.085 0.915 9 C -0.019 4.019 10 C -0.133 4.133 11 C -0.135 4.135 12 C -0.169 4.169 13 C 0.299 3.701 14 O -0.469 6.469 15 N -0.373 5.373 16 C 0.003 3.997 17 C -0.141 4.141 18 H 0.110 0.890 19 C -0.156 4.156 20 C -0.188 4.188 21 C -0.026 4.026 22 O -0.320 6.320 23 C -0.014 4.014 24 H 0.071 0.929 25 H 0.003 0.997 26 H 0.002 0.998 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.254 0.746 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.123 0.877 41 H 0.073 0.927 42 H 0.119 0.881 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.677 -29.451 0.793 31.010 hybrid contribution -0.259 1.017 -0.052 1.050 sum 9.418 -28.434 0.741 29.962 Atomic orbital electron populations 1.70128 1.08065 1.27802 1.51820 1.26114 0.95818 1.03795 0.94816 0.85424 0.78151 0.77640 0.79350 1.18907 1.21100 1.18888 1.21730 0.93749 0.92218 1.50312 0.91549 1.19063 0.94719 0.93844 0.94289 1.21448 0.97805 0.92737 1.01336 1.21246 0.97530 0.93708 1.00985 1.21682 0.98930 0.89489 1.06758 1.21195 0.87739 0.86762 0.74406 1.90699 1.16540 1.88427 1.51266 1.45951 1.11130 1.04927 1.75319 1.21300 0.94539 0.81992 1.01838 1.21945 0.97498 0.94496 1.00169 0.89031 1.21602 0.97891 0.92814 1.03302 1.22157 0.98631 0.99350 0.98688 1.22792 0.97422 0.85489 0.96873 1.87929 1.34474 1.14900 1.94667 1.22707 0.93234 0.89776 0.95709 0.92864 0.99731 0.99756 0.92059 0.92036 0.93894 0.93946 0.86335 0.86245 0.74591 0.92326 0.92134 0.91287 0.90547 0.91113 0.89143 0.87739 0.92703 0.88069 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.43 13.29 21.45 0.28 -59.15 16 2 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 3 Si 0.97 45.04 29.54 68.60 2.03 47.06 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.54 -31.66 9.11 25.60 0.23 -31.43 16 8 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 9 C 0.02 1.00 4.97 29.85 0.15 1.15 16 10 C -0.10 -3.93 5.15 30.59 0.16 -3.77 16 11 C -0.10 -3.50 4.50 30.59 0.14 -3.37 16 12 C -0.13 -3.14 5.70 29.85 0.17 -2.97 16 13 C 0.51 13.56 7.83 87.66 0.69 14.25 16 14 O -0.59 -21.93 15.98 -3.03 -0.05 -21.97 16 15 N -0.72 -12.57 5.31 -463.06 -2.46 -15.03 16 16 C 0.13 2.11 5.07 86.38 0.44 2.55 16 17 C -0.12 -1.41 2.42 -10.70 -0.03 -1.44 16 18 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 19 C -0.12 -1.18 5.32 30.71 0.16 -1.02 16 20 C -0.15 -1.27 6.13 30.69 0.19 -1.08 16 21 C 0.05 0.52 6.84 72.01 0.49 1.01 16 22 O -0.40 -6.08 10.76 -148.98 -1.60 -7.69 16 23 C 0.06 0.78 5.97 72.01 0.43 1.21 16 24 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 25 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 26 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 27 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 30 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 31 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.42 4.52 7.68 -92.71 -0.71 3.80 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.10 1.08 7.26 -2.39 -0.02 1.06 16 43 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 Total: -1.00 -76.53 348.15 2.13 -74.40 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 0.25 Total: 7.32 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 3.68 Total: -24.94 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: -2.17 Total: -74.18 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -1.65 Total: -29.66 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -76.53 2.13 -74.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588152745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.365 kcal (2) G-P(sol) polarization free energy of solvation -76.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds