Wall clock time and date at job start Mon Mar 30 2020 01:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48498 * 109.47375 * 270.00761 * 3 2 1 5 5 H 1.48508 * 109.47196 * 30.00757 * 3 2 1 6 6 H 1.48504 * 109.47051 * 150.00381 * 3 2 1 7 7 C 1.37876 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99588 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46912 * 179.97438 * 12 11 10 14 14 O 1.21278 * 119.99985 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00161 * 179.97438 * 13 12 11 16 16 C 1.46496 * 120.00271 * 179.97438 * 15 13 12 17 17 H 1.09007 * 108.94409 * 36.24069 * 16 15 13 18 18 C 1.46287 * 108.96211 * 154.99910 * 16 15 13 19 19 C 1.54199 * 112.07421 * 181.55971 * 18 16 15 20 20 C 1.50411 * 108.77395 * 282.19325 * 19 18 16 21 21 O 1.44189 * 112.77541 * 92.57726 * 20 19 18 22 22 C 1.44187 * 116.92462 * 318.47783 * 21 20 19 23 23 C 1.50412 * 112.78301 * 318.47546 * 22 21 20 24 24 H 0.97008 * 120.00167 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 26 26 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 27 27 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 28 28 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 29 29 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 30 30 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 31 31 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 32 32 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 33 33 H 0.97005 * 119.99463 * 0.02562 * 15 13 12 34 34 H 1.08994 * 108.96264 * 302.23564 * 18 16 15 35 35 H 1.09006 * 108.95722 * 60.98658 * 18 16 15 36 36 H 1.09000 * 109.58562 * 41.97857 * 19 18 16 37 37 H 1.08999 * 109.58734 * 162.40447 * 19 18 16 38 38 H 1.09000 * 108.82686 * 213.42987 * 20 19 18 39 39 H 1.09003 * 108.82183 * 331.83611 * 20 19 18 40 40 H 1.09007 * 108.82287 * 79.32533 * 22 21 20 41 41 H 1.09000 * 108.82428 * 197.62417 * 22 21 20 42 42 H 1.08999 * 109.58695 * 332.79000 * 23 22 21 43 43 H 1.09000 * 109.58675 * 212.35917 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 6 6.0615 -4.0790 -0.0028 13 6 7.5685 -4.0790 -0.0046 14 8 8.1749 -3.0287 -0.0050 15 7 8.2424 -5.2462 -0.0048 16 6 9.7074 -5.2462 -0.0072 17 1 10.0622 -4.4142 0.6011 18 6 10.1836 -6.4997 0.5777 19 6 11.7230 -6.5592 0.6459 20 6 12.2561 -6.8824 -0.7229 21 8 12.5724 -5.7040 -1.4913 22 6 11.6410 -4.6059 -1.4158 23 6 10.2062 -5.0555 -1.4538 24 1 -0.4851 0.8401 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8744 -0.6801 -0.8912 27 1 3.6578 -3.1506 -0.8907 28 1 3.6585 -3.1501 0.8892 29 1 5.9156 -2.1223 0.8873 30 1 5.9141 -2.1230 -0.8927 31 1 5.6989 -4.5929 0.8875 32 1 5.6974 -4.5928 -0.8924 33 1 7.7573 -6.0863 -0.0042 34 1 9.7804 -6.5959 1.5857 35 1 9.8248 -7.3319 -0.0280 36 1 12.1119 -5.5943 0.9711 37 1 12.0278 -7.3342 1.3492 38 1 13.1580 -7.4850 -0.6159 39 1 11.5083 -7.4626 -1.2636 40 1 11.8142 -4.0609 -0.4878 41 1 11.8212 -3.9336 -2.2547 42 1 10.1333 -6.0000 -1.9929 43 1 9.5995 -4.2998 -1.9528 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588163213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:09 Heat of formation + Delta-G solvation = -112.683918 kcal Electronic energy + Delta-G solvation = -20440.242725 eV Core-core repulsion = 17291.341225 eV Total energy + Delta-G solvation = -3148.901500 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.57202 -39.03729 -36.10989 -34.97656 -33.36076 -32.63223 -31.98898 -30.06691 -27.61752 -26.14395 -25.09723 -22.23230 -21.33726 -20.90119 -20.12112 -20.02536 -17.40584 -17.17047 -16.80294 -16.51423 -15.87081 -15.48427 -15.26218 -14.42145 -14.19180 -13.95247 -13.91670 -13.73227 -13.36291 -12.88773 -12.64775 -12.45084 -12.17858 -11.92443 -11.75443 -11.73201 -11.41672 -11.18274 -11.10663 -10.94208 -10.73954 -10.53996 -9.97511 -9.86919 -9.81012 -9.64802 -9.41276 -9.26499 -9.11717 -8.49259 -6.00431 -3.97903 2.63614 2.96144 3.35480 3.42051 3.42465 3.48505 4.16106 4.33150 4.38260 4.50243 4.53105 4.71539 4.77567 4.98567 5.06689 5.10206 5.17936 5.22853 5.26533 5.28919 5.34634 5.41692 5.48353 5.58932 5.67300 5.74068 5.79349 5.86024 6.02569 6.14894 6.26311 6.41498 6.68028 6.82053 6.86681 6.99104 7.35254 7.38294 7.51032 7.84944 8.18360 8.58428 9.04491 9.62963 11.13055 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.046931 B = 0.002706 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.476918 B =10343.995454 C =10674.658994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.103 4.103 11 C -0.106 4.106 12 C -0.139 4.139 13 C 0.513 3.487 14 O -0.535 6.535 15 N -0.737 5.737 16 C 0.144 3.856 17 H 0.086 0.914 18 C -0.133 4.133 19 C -0.150 4.150 20 C 0.061 3.939 21 O -0.396 6.396 22 C 0.066 3.934 23 C -0.163 4.163 24 H 0.262 0.738 25 H 0.015 0.985 26 H 0.011 0.989 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.399 0.601 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.345 -17.087 0.019 29.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.144 4.144 12 C -0.179 4.179 13 C 0.300 3.700 14 O -0.411 6.411 15 N -0.389 5.389 16 C 0.040 3.960 17 H 0.104 0.896 18 C -0.171 4.171 19 C -0.188 4.188 20 C -0.015 4.015 21 O -0.316 6.316 22 C -0.011 4.011 23 C -0.201 4.201 24 H 0.072 0.928 25 H 0.034 0.966 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.233 0.767 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.094 0.906 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 24.773 -16.176 -0.076 29.587 hybrid contribution -0.252 0.408 0.153 0.503 sum 24.521 -15.768 0.077 29.153 Atomic orbital electron populations 1.69922 1.06307 1.26822 1.51488 1.25045 0.94741 0.99238 0.94620 0.86770 0.80426 0.83534 0.78540 1.20314 1.21460 1.18902 1.21184 0.89671 0.94375 1.50499 0.91123 1.19575 0.96904 0.92503 0.96307 1.21475 0.91713 0.99920 1.00911 1.21479 0.97199 0.92845 1.02871 1.21784 0.90229 1.01746 1.04175 1.21103 0.90893 0.83227 0.74755 1.90697 1.70600 1.31305 1.48505 1.46295 1.06526 1.09086 1.77036 1.20006 0.80555 0.99203 0.96262 0.89636 1.20937 0.96342 0.97648 1.02145 1.21858 0.94744 1.03838 0.98343 1.22323 1.00931 0.87418 0.90834 1.88271 1.48482 1.25375 1.69428 1.22216 0.87975 0.88434 1.02439 1.22340 0.97124 1.03290 0.97396 0.92820 0.96632 0.97061 0.92887 0.92857 0.91816 0.91825 0.89019 0.89013 0.76692 0.90747 0.91156 0.90311 0.89835 0.89489 0.93098 0.92820 0.89138 0.90649 0.89699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.45 13.96 55.43 0.77 -27.68 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.42 27.47 -169.99 -4.67 17.75 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 7 C -0.52 -15.14 9.66 -34.44 -0.33 -15.47 16 8 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 9 C -0.02 -0.38 4.04 -27.89 -0.11 -0.50 16 10 C -0.10 -2.01 5.15 -26.74 -0.14 -2.15 16 11 C -0.11 -1.77 4.50 -26.73 -0.12 -1.89 16 12 C -0.14 -1.71 5.70 -27.88 -0.16 -1.87 16 13 C 0.51 6.54 7.60 -10.98 -0.08 6.45 16 14 O -0.54 -9.02 15.65 5.56 0.09 -8.93 16 15 N -0.74 -6.58 5.04 -56.32 -0.28 -6.87 16 16 C 0.14 1.22 1.99 -70.50 -0.14 1.08 16 17 H 0.09 0.91 7.00 -51.93 -0.36 0.55 16 18 C -0.13 -0.78 4.69 -29.30 -0.14 -0.92 16 19 C -0.15 -0.83 5.61 -27.40 -0.15 -0.99 16 20 C 0.06 0.40 6.27 35.87 0.22 0.62 16 21 O -0.40 -3.73 10.88 -35.23 -0.38 -4.12 16 22 C 0.07 0.58 6.26 35.87 0.22 0.81 16 23 C -0.16 -1.42 5.18 -27.39 -0.14 -1.56 16 24 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 25 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 26 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.13 8.10 -51.93 -0.42 0.70 16 30 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.40 2.44 8.56 -40.82 -0.35 2.09 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.34 7.55 -51.93 -0.39 -0.05 16 36 H 0.08 0.52 7.15 -51.93 -0.37 0.15 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.05 0.30 6.67 -51.93 -0.35 -0.04 16 40 H 0.05 0.48 6.67 -51.92 -0.35 0.13 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.60 7.15 -51.93 -0.37 0.23 16 43 H 0.08 0.90 7.94 -51.93 -0.41 0.49 16 LS Contribution 336.94 15.07 5.08 5.08 Total: -1.00 -34.25 336.94 -8.09 -42.34 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -7.53 Total: -3.01 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -1.17 Total: -14.56 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.49 Total: -34.55 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.30 Total: -13.05 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.67 Total: 17.75 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.25 -8.09 -42.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588163213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.344 kcal (2) G-P(sol) polarization free energy of solvation -34.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds