Wall clock time and date at job start Mon Mar 30 2020 01:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48498 * 109.47375 * 270.00761 * 3 2 1 5 5 H 1.48508 * 109.47196 * 30.00757 * 3 2 1 6 6 H 1.48504 * 109.47051 * 150.00381 * 3 2 1 7 7 C 1.37876 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99588 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46912 * 179.97438 * 12 11 10 14 14 O 1.21278 * 119.99985 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00161 * 179.97438 * 13 12 11 16 16 C 1.46496 * 120.00271 * 179.97438 * 15 13 12 17 17 H 1.09007 * 108.94409 * 36.24069 * 16 15 13 18 18 C 1.46287 * 108.96211 * 154.99910 * 16 15 13 19 19 C 1.54199 * 112.07421 * 181.55971 * 18 16 15 20 20 C 1.50411 * 108.77395 * 282.19325 * 19 18 16 21 21 O 1.44189 * 112.77541 * 92.57726 * 20 19 18 22 22 C 1.44187 * 116.92462 * 318.47783 * 21 20 19 23 23 C 1.50412 * 112.78301 * 318.47546 * 22 21 20 24 24 H 0.97008 * 120.00167 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 26 26 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 27 27 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 28 28 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 29 29 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 30 30 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 31 31 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 32 32 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 33 33 H 0.97005 * 119.99463 * 0.02562 * 15 13 12 34 34 H 1.08994 * 108.96264 * 302.23564 * 18 16 15 35 35 H 1.09006 * 108.95722 * 60.98658 * 18 16 15 36 36 H 1.09000 * 109.58562 * 41.97857 * 19 18 16 37 37 H 1.08999 * 109.58734 * 162.40447 * 19 18 16 38 38 H 1.09000 * 108.82686 * 213.42987 * 20 19 18 39 39 H 1.09003 * 108.82183 * 331.83611 * 20 19 18 40 40 H 1.09007 * 108.82287 * 79.32533 * 22 21 20 41 41 H 1.09000 * 108.82428 * 197.62417 * 22 21 20 42 42 H 1.08999 * 109.58695 * 332.79000 * 23 22 21 43 43 H 1.09000 * 109.58675 * 212.35917 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 6 6.0615 -4.0790 -0.0028 13 6 7.5685 -4.0790 -0.0046 14 8 8.1749 -3.0287 -0.0050 15 7 8.2424 -5.2462 -0.0048 16 6 9.7074 -5.2462 -0.0072 17 1 10.0622 -4.4142 0.6011 18 6 10.1836 -6.4997 0.5777 19 6 11.7230 -6.5592 0.6459 20 6 12.2561 -6.8824 -0.7229 21 8 12.5724 -5.7040 -1.4913 22 6 11.6410 -4.6059 -1.4158 23 6 10.2062 -5.0555 -1.4538 24 1 -0.4851 0.8401 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8744 -0.6801 -0.8912 27 1 3.6578 -3.1506 -0.8907 28 1 3.6585 -3.1501 0.8892 29 1 5.9156 -2.1223 0.8873 30 1 5.9141 -2.1230 -0.8927 31 1 5.6989 -4.5929 0.8875 32 1 5.6974 -4.5928 -0.8924 33 1 7.7573 -6.0863 -0.0042 34 1 9.7804 -6.5959 1.5857 35 1 9.8248 -7.3319 -0.0280 36 1 12.1119 -5.5943 0.9711 37 1 12.0278 -7.3342 1.3492 38 1 13.1580 -7.4850 -0.6159 39 1 11.5083 -7.4626 -1.2636 40 1 11.8142 -4.0609 -0.4878 41 1 11.8212 -3.9336 -2.2547 42 1 10.1333 -6.0000 -1.9929 43 1 9.5995 -4.2998 -1.9528 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588163213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:09 Heat of formation + Delta-G solvation = -136.375934 kcal Electronic energy + Delta-G solvation = -20441.270088 eV Core-core repulsion = 17291.341225 eV Total energy + Delta-G solvation = -3149.928862 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.36430 -39.86033 -37.00293 -36.47443 -34.60962 -33.99317 -32.87800 -31.65455 -28.46642 -27.40427 -26.00479 -23.78947 -21.95713 -21.83742 -21.55260 -21.01040 -18.86135 -18.09414 -17.95167 -17.48755 -16.90753 -16.41111 -16.15034 -16.09163 -15.40050 -14.98763 -14.84047 -14.63230 -14.41543 -13.99975 -13.87319 -13.71679 -13.50947 -13.41392 -12.87338 -12.56588 -12.35980 -12.31729 -12.09312 -12.05594 -11.79882 -11.75928 -11.51537 -11.45119 -11.34794 -11.26601 -10.76594 -10.74128 -10.48934 -10.09978 -8.30180 -6.33211 1.34417 1.35836 1.48706 1.66181 2.15978 2.35470 2.82639 3.05219 3.58186 3.73085 3.79658 3.91668 4.01441 4.02893 4.13524 4.16060 4.37720 4.46553 4.48382 4.63622 4.65166 4.66053 4.72767 4.77564 4.84146 4.86735 4.96183 5.07893 5.10588 5.14644 5.17902 5.20358 5.25630 5.29196 5.50231 5.60648 5.65456 5.68423 6.26925 6.29065 6.57527 6.74787 7.29425 7.31684 8.86386 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.046931 B = 0.002706 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.476918 B =10343.995454 C =10674.658994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.003 3.997 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.252 1.252 7 C -0.530 4.530 8 H 0.037 0.963 9 C -0.017 4.017 10 C -0.094 4.094 11 C -0.097 4.097 12 C -0.132 4.132 13 C 0.512 3.488 14 O -0.584 6.584 15 N -0.718 5.718 16 C 0.147 3.853 17 H 0.061 0.939 18 C -0.129 4.129 19 C -0.145 4.145 20 C 0.053 3.947 21 O -0.415 6.415 22 C 0.068 3.932 23 C -0.155 4.155 24 H 0.266 0.734 25 H 0.013 0.987 26 H 0.012 0.988 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.417 0.583 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.060 0.940 40 H 0.048 0.952 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.934 -18.545 0.218 31.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.176 1.176 7 C -0.568 4.568 8 H 0.055 0.945 9 C -0.055 4.055 10 C -0.131 4.131 11 C -0.136 4.136 12 C -0.171 4.171 13 C 0.300 3.700 14 O -0.463 6.463 15 N -0.370 5.370 16 C 0.042 3.958 17 H 0.079 0.921 18 C -0.167 4.167 19 C -0.183 4.183 20 C -0.022 4.022 21 O -0.336 6.336 22 C -0.009 4.009 23 C -0.194 4.194 24 H 0.075 0.925 25 H 0.032 0.968 26 H 0.030 0.970 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.254 0.746 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.124 0.876 38 H 0.118 0.882 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 26.370 -17.701 0.123 31.760 hybrid contribution -0.775 0.766 0.087 1.093 sum 25.595 -16.935 0.211 30.691 Atomic orbital electron populations 1.70060 1.08115 1.28084 1.52885 1.25997 0.95627 1.03410 0.94305 0.85692 0.79378 0.78619 0.79176 1.19229 1.20719 1.17620 1.21546 0.92119 0.93209 1.49951 0.94456 1.19578 0.93890 0.95947 0.96054 1.21338 0.93788 0.96679 1.01330 1.21276 0.94746 0.95861 1.01684 1.21685 0.89935 0.99002 1.06518 1.21155 0.91086 0.83444 0.74282 1.90688 1.71421 1.33175 1.51055 1.46123 1.06880 1.08840 1.75202 1.20044 0.80011 0.99885 0.95850 0.92107 1.20909 0.96578 0.96530 1.02637 1.21842 0.94341 1.03865 0.98285 1.22557 1.02062 0.86519 0.91088 1.88245 1.48852 1.26187 1.70274 1.22146 0.88082 0.88575 1.02076 1.22245 0.96595 1.03112 0.97458 0.92510 0.96839 0.96950 0.92463 0.92450 0.93103 0.93056 0.86620 0.86666 0.74590 0.89988 0.89264 0.91691 0.87625 0.88156 0.92165 0.93423 0.89386 0.89425 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.67 13.96 21.45 0.30 -60.37 16 2 C 0.00 0.19 5.47 84.65 0.46 0.66 16 3 Si 0.95 46.11 27.47 68.60 1.88 47.99 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 5 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.25 -11.69 6.54 99.48 0.65 -11.04 16 7 C -0.53 -31.32 9.66 25.60 0.25 -31.07 16 8 H 0.04 2.38 7.99 -2.91 -0.02 2.35 16 9 C -0.02 -0.84 4.04 29.84 0.12 -0.72 16 10 C -0.09 -3.58 5.15 30.59 0.16 -3.43 16 11 C -0.10 -3.13 4.50 30.59 0.14 -2.99 16 12 C -0.13 -2.91 5.70 29.85 0.17 -2.74 16 13 C 0.51 12.28 7.60 87.66 0.67 12.95 16 14 O -0.58 -19.61 15.65 -3.02 -0.05 -19.66 16 15 N -0.72 -11.20 5.04 -450.50 -2.27 -13.47 16 16 C 0.15 2.27 1.99 43.33 0.09 2.36 16 17 H 0.06 1.28 7.00 -2.38 -0.02 1.27 16 18 C -0.13 -1.16 4.69 28.93 0.14 -1.02 16 19 C -0.15 -1.28 5.61 30.16 0.17 -1.12 16 20 C 0.05 0.58 6.27 71.15 0.45 1.02 16 21 O -0.42 -7.42 10.88 -148.98 -1.62 -9.04 16 22 C 0.07 1.19 6.26 71.15 0.45 1.63 16 23 C -0.16 -2.57 5.18 30.17 0.16 -2.42 16 24 H 0.27 15.82 8.31 -92.70 -0.77 15.05 16 25 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 26 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 27 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 30 H 0.05 1.76 8.10 -2.39 -0.02 1.74 16 31 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.42 3.64 8.56 -92.70 -0.79 2.85 16 34 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.09 0.51 7.55 -2.38 -0.02 0.50 16 36 H 0.06 0.78 7.15 -2.39 -0.02 0.76 16 37 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.06 0.54 6.67 -2.39 -0.02 0.53 16 40 H 0.05 0.87 6.67 -2.38 -0.02 0.86 16 41 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.09 1.22 7.15 -2.39 -0.02 1.20 16 43 H 0.06 1.34 7.94 -2.39 -0.02 1.33 16 Total: -1.00 -75.59 336.94 1.78 -73.81 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 0.13 Total: 7.62 kcal Atomic # 6 Polarization: -30.29 SS G_CDS: 3.40 Total: -26.89 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: -1.97 Total: -73.84 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -1.67 Total: -28.70 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.88 Total: 47.99 kcal Total: -75.59 1.78 -73.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588163213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.566 kcal (2) G-P(sol) polarization free energy of solvation -75.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds