Wall clock time and date at job start Mon Mar 30 2020 01:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 269.99993 * 3 2 1 5 5 H 1.48499 * 109.47352 * 30.00146 * 3 2 1 6 6 H 1.48501 * 109.46810 * 150.00608 * 3 2 1 7 7 C 1.37871 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 359.97438 * 7 2 1 10 10 C 1.53011 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46712 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47000 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47208 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99803 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99675 * 180.27843 * 13 12 11 16 16 C 1.46497 * 119.99525 * 179.72583 * 15 13 12 17 17 C 1.52999 * 109.46992 * 179.97438 * 16 15 13 18 18 O 1.42893 * 110.01804 * 64.29921 * 17 16 15 19 19 C 1.54267 * 110.03274 * 302.90898 * 17 16 15 20 20 C 1.54972 * 104.15867 * 217.13751 * 19 17 16 21 21 C 1.54880 * 102.78096 * 37.88630 * 20 19 17 22 22 C 1.53880 * 110.03528 * 185.69235 * 17 16 15 23 23 H 0.96999 * 120.00235 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47174 * 60.00647 * 9 7 2 25 25 H 1.08992 * 109.46936 * 299.99779 * 9 7 2 26 26 H 1.08995 * 109.46784 * 60.00085 * 10 9 7 27 27 H 1.09001 * 109.46592 * 299.99709 * 10 9 7 28 28 H 1.09000 * 109.47849 * 59.99915 * 11 10 9 29 29 H 1.08998 * 109.47443 * 299.99783 * 11 10 9 30 30 H 1.09009 * 109.46730 * 59.99606 * 12 11 10 31 31 H 1.08998 * 109.46846 * 300.00150 * 12 11 10 32 32 H 0.97000 * 119.99894 * 359.71837 * 15 13 12 33 33 H 1.08995 * 109.47421 * 299.99467 * 16 15 13 34 34 H 1.09001 * 109.47621 * 60.00103 * 16 15 13 35 35 H 0.96701 * 113.99816 * 300.70211 * 18 17 16 36 36 H 1.09004 * 110.48633 * 335.77984 * 19 17 16 37 37 H 1.09000 * 110.49179 * 98.42574 * 19 17 16 38 38 H 1.08998 * 110.71446 * 279.56994 * 20 19 17 39 39 H 1.09001 * 110.76032 * 156.22521 * 20 19 17 40 40 H 1.08991 * 110.49222 * 203.40946 * 21 20 19 41 41 H 1.09005 * 110.48779 * 80.75911 * 21 20 19 42 42 H 1.09005 * 110.02950 * 238.57118 * 22 17 16 43 43 H 1.08998 * 110.02796 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 6 1.4805 -4.9870 -0.0025 12 6 2.4748 -6.1500 -0.0044 13 6 1.7213 -7.4551 -0.0044 14 8 0.5085 -7.4551 -0.0025 15 7 2.3953 -8.6222 -0.0003 16 6 1.6629 -9.8909 0.0058 17 6 2.6571 -11.0538 0.0089 18 8 3.4193 -11.0425 1.2175 19 6 3.5972 -10.9485 -1.2097 20 6 3.8111 -12.4184 -1.6516 21 6 2.4153 -13.0506 -1.4259 22 6 1.9061 -12.3899 -0.1282 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6249 -2.5571 0.8896 26 1 2.8727 -3.6046 0.8877 27 1 2.8714 -3.6038 -0.8923 28 1 0.8534 -5.0442 -0.8922 29 1 0.8542 -5.0455 0.8877 30 1 3.1022 -6.0930 0.8852 31 1 3.1007 -6.0913 -0.8948 32 1 3.3653 -8.6221 -0.0015 33 1 1.0373 -9.9451 0.8967 34 1 1.0352 -9.9525 -0.8833 35 1 3.9246 -10.2297 1.3562 36 1 3.1249 -10.3754 -2.0076 37 1 4.5453 -10.4941 -0.9221 38 1 4.5606 -12.9038 -1.0266 39 1 4.0924 -12.4686 -2.7035 40 1 2.5014 -14.1293 -1.2963 41 1 1.7516 -12.8172 -2.2585 42 1 2.1238 -13.0299 0.7270 43 1 0.8333 -12.2098 -0.1964 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588620694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:40 Heat of formation + Delta-G solvation = -154.806625 kcal Electronic energy + Delta-G solvation = -20200.650154 eV Core-core repulsion = 17049.922077 eV Total energy + Delta-G solvation = -3150.728077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.18517 -39.90979 -36.66975 -35.98160 -35.32260 -34.60461 -31.73846 -30.23636 -29.62063 -27.52668 -25.63305 -23.88087 -22.12847 -21.68611 -21.28164 -20.75276 -18.46476 -18.37093 -17.56324 -17.05000 -16.93204 -16.50783 -16.30094 -15.89573 -15.69059 -14.77766 -14.62606 -14.53215 -14.40082 -13.71396 -13.62945 -13.57838 -13.29330 -13.10051 -12.81028 -12.54083 -12.34146 -12.15750 -12.12432 -12.05283 -12.03667 -11.73589 -11.47160 -11.37325 -11.35470 -11.16641 -10.95010 -10.74541 -10.54868 -10.19290 -8.18477 -6.30740 1.40601 1.42956 1.54019 1.62908 2.12572 2.42267 3.14222 3.16980 3.45788 3.60039 3.72331 3.85108 4.06509 4.15154 4.23596 4.31231 4.42483 4.51454 4.62201 4.69573 4.70686 4.77783 4.82923 4.85239 4.89033 4.92702 5.02123 5.11052 5.18709 5.19740 5.26149 5.33900 5.34351 5.41464 5.45582 5.57745 5.78621 5.88534 6.25465 6.48148 6.75004 6.87982 7.23966 7.38968 8.93812 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.051491 B = 0.002464 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.654276 B =11363.116129 C =11539.098451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.017 3.983 10 C -0.095 4.095 11 C -0.097 4.097 12 C -0.128 4.128 13 C 0.511 3.489 14 O -0.589 6.589 15 N -0.716 5.716 16 C 0.098 3.902 17 C 0.127 3.873 18 O -0.565 6.565 19 C -0.150 4.150 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.117 4.117 23 H 0.263 0.737 24 H -0.016 1.016 25 H -0.016 1.016 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.416 0.584 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.386 0.614 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.039 -27.299 -2.381 29.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.020 4.020 10 C -0.133 4.133 11 C -0.136 4.136 12 C -0.167 4.167 13 C 0.300 3.700 14 O -0.468 6.468 15 N -0.370 5.370 16 C -0.026 4.026 17 C 0.086 3.914 18 O -0.373 6.373 19 C -0.188 4.188 20 C -0.158 4.158 21 C -0.161 4.161 22 C -0.155 4.155 23 H 0.071 0.929 24 H 0.002 0.998 25 H 0.002 0.998 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.253 0.747 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.236 0.764 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.777 -27.803 -2.305 29.908 hybrid contribution 0.140 1.618 0.044 1.625 sum 10.917 -26.185 -2.262 28.460 Atomic orbital electron populations 1.70134 1.08095 1.27747 1.51936 1.26110 0.95792 1.03799 0.94825 0.85373 0.78670 0.78015 0.78528 1.19686 1.21010 1.18261 1.21758 0.93766 0.92191 1.50151 0.91499 1.19071 0.94738 0.93895 0.94264 1.21445 0.97780 0.92646 1.01392 1.21254 0.97563 0.93790 1.00949 1.21683 0.98892 0.89221 1.06903 1.21247 0.87760 0.86732 0.74295 1.90708 1.16660 1.88379 1.51096 1.45808 1.10933 1.04705 1.75586 1.22116 0.95470 0.83076 1.01987 1.22102 0.90244 0.93929 0.85135 1.86599 1.64686 1.44470 1.41540 1.23116 0.99859 0.98619 0.97208 1.22467 0.97087 0.94512 1.01744 1.22385 0.96874 1.00414 0.96432 1.22163 0.99630 0.94105 0.99569 0.92869 0.99766 0.99796 0.92000 0.91945 0.93944 0.94028 0.86109 0.86087 0.74681 0.92667 0.91371 0.76412 0.90500 0.89320 0.91222 0.90435 0.90443 0.90958 0.90610 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.34 13.29 21.45 0.28 -59.05 16 2 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 3 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.54 -31.37 9.11 25.60 0.23 -31.14 16 8 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 9 C 0.02 0.96 4.97 29.85 0.15 1.11 16 10 C -0.10 -3.85 5.15 30.60 0.16 -3.69 16 11 C -0.10 -3.48 4.50 30.59 0.14 -3.35 16 12 C -0.13 -2.98 5.70 29.85 0.17 -2.81 16 13 C 0.51 13.30 7.83 87.66 0.69 13.99 16 14 O -0.59 -21.92 15.98 -3.04 -0.05 -21.97 16 15 N -0.72 -11.97 5.09 -463.07 -2.36 -14.32 16 16 C 0.10 1.75 4.47 86.38 0.39 2.13 16 17 C 0.13 1.66 1.04 -10.07 -0.01 1.65 16 18 O -0.57 -7.95 12.90 -148.98 -1.92 -9.88 16 19 C -0.15 -1.46 5.25 31.70 0.17 -1.30 16 20 C -0.12 -1.13 6.91 31.91 0.22 -0.91 16 21 C -0.12 -1.25 6.83 31.67 0.22 -1.03 16 22 C -0.12 -1.53 6.27 31.32 0.20 -1.33 16 23 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 24 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 25 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 26 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 29 H 0.04 1.65 8.10 -2.39 -0.02 1.63 16 30 H 0.12 2.16 8.14 -2.38 -0.02 2.14 16 31 H 0.12 2.15 8.14 -2.39 -0.02 2.14 16 32 H 0.42 3.71 7.30 -92.71 -0.68 3.03 16 33 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.39 2.96 8.18 -74.06 -0.61 2.35 16 36 H 0.08 0.82 7.85 -2.38 -0.02 0.80 16 37 H 0.09 0.60 8.05 -2.39 -0.02 0.58 16 38 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 42 H 0.08 1.09 7.96 -2.38 -0.02 1.07 16 43 H 0.08 1.00 7.67 -2.39 -0.02 0.98 16 Total: -1.00 -77.52 348.58 0.85 -76.67 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -0.30 Total: 8.40 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: 3.17 Total: -26.68 kcal Atomic # 7 Polarization: -71.31 SS G_CDS: -2.07 Total: -73.38 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -1.97 Total: -31.85 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -77.52 0.85 -76.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588620694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.139 kcal (2) G-P(sol) polarization free energy of solvation -77.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds