Wall clock time and date at job start Mon Mar 30 2020 01:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00328 * 2 1 4 4 H 1.48504 * 109.46882 * 270.00024 * 3 2 1 5 5 H 1.48499 * 109.46932 * 29.99539 * 3 2 1 6 6 H 1.48495 * 109.47377 * 150.00100 * 3 2 1 7 7 C 1.37888 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99747 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99833 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46678 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46671 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46709 * 180.02562 * 11 10 9 13 13 C 1.50709 * 109.47042 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99629 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00028 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99655 * 179.97438 * 15 13 12 17 17 H 1.09001 * 109.47117 * 324.99421 * 16 15 13 18 18 C 1.52997 * 109.47195 * 85.00085 * 16 15 13 19 19 O 1.42898 * 109.47319 * 64.99855 * 18 16 15 20 20 C 1.53001 * 109.46579 * 205.00049 * 16 15 13 21 21 C 1.53000 * 109.47435 * 64.99902 * 20 16 15 22 22 C 1.52997 * 117.49967 * 243.61859 * 21 20 16 23 23 C 1.53000 * 60.00092 * 252.51319 * 22 21 20 24 24 H 0.97001 * 119.99819 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47264 * 60.00769 * 9 7 2 26 26 H 1.08994 * 109.47587 * 300.00215 * 9 7 2 27 27 H 1.09001 * 109.46497 * 60.00481 * 10 9 7 28 28 H 1.08990 * 109.47469 * 299.99973 * 10 9 7 29 29 H 1.08996 * 109.47269 * 60.00534 * 11 10 9 30 30 H 1.09003 * 109.47464 * 300.00401 * 11 10 9 31 31 H 1.09001 * 109.47503 * 60.00255 * 12 11 10 32 32 H 1.08999 * 109.47227 * 299.99693 * 12 11 10 33 33 H 0.96999 * 119.99618 * 359.97438 * 15 13 12 34 34 H 1.09002 * 109.47153 * 304.99547 * 18 16 15 35 35 H 1.09001 * 109.46832 * 184.99738 * 18 16 15 36 36 H 0.96701 * 113.99881 * 180.02562 * 19 18 16 37 37 H 1.09001 * 109.47104 * 185.00172 * 20 16 15 38 38 H 1.09007 * 109.47304 * 304.99837 * 20 16 15 39 39 H 1.08999 * 115.54714 * 29.33332 * 21 20 16 40 40 H 1.09003 * 117.49928 * 0.02562 * 22 21 20 41 41 H 1.09000 * 117.49479 * 145.01904 * 22 21 20 42 42 H 1.09000 * 117.49514 * 252.51142 * 23 22 21 43 43 H 1.09001 * 117.49907 * 107.49150 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1942 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6367 0.0014 11 6 5.5515 -2.6367 0.0001 12 6 6.0614 -4.0792 0.0009 13 6 7.5685 -4.0793 0.0003 14 8 8.1749 -3.0290 -0.0011 15 7 8.2423 -5.2465 0.0014 16 6 9.7073 -5.2465 0.0002 17 1 10.0702 -4.4055 -0.5907 18 6 10.2184 -5.1189 1.4366 19 8 9.8410 -6.2786 2.1814 20 6 10.2167 -6.5547 -0.6081 21 6 9.8108 -6.6242 -2.0816 22 6 8.8542 -7.7430 -2.4989 23 6 10.3288 -7.8072 -2.9020 24 1 -0.4850 0.8401 -0.0004 25 1 3.8752 -0.6798 0.8895 26 1 3.8746 -0.6809 -0.8904 27 1 3.6577 -3.1514 -0.8880 28 1 3.6585 -3.1495 0.8920 29 1 5.9155 -2.1218 0.8892 30 1 5.9141 -2.1239 -0.8908 31 1 5.6974 -4.5938 -0.8884 32 1 5.6988 -4.5923 0.8916 33 1 7.7572 -6.0865 0.0029 34 1 9.7842 -4.2326 1.8994 35 1 11.3047 -5.0296 1.4291 36 1 10.1323 -6.2659 3.1034 37 1 11.3031 -6.5937 -0.5283 38 1 9.7825 -7.3983 -0.0714 39 1 9.7144 -5.6640 -2.5884 40 1 8.5138 -8.4294 -1.7235 41 1 8.1281 -7.5189 -3.2803 42 1 10.5727 -7.6254 -3.9487 43 1 10.9587 -8.5360 -2.3920 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588670833.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:32 Heat of formation + Delta-G solvation = -96.284128 kcal Electronic energy + Delta-G solvation = -20300.268847 eV Core-core repulsion = 17152.078495 eV Total energy + Delta-G solvation = -3148.190351 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.03530 -38.17131 -37.02362 -35.09027 -34.56218 -32.57634 -31.22414 -29.74470 -27.04902 -25.85682 -22.80058 -22.54196 -21.32959 -20.79909 -20.12984 -19.98277 -17.79488 -16.89971 -16.68864 -16.38841 -15.75353 -15.39665 -14.94151 -14.69934 -14.18091 -13.99179 -13.72415 -13.47051 -13.22376 -12.62537 -12.60876 -12.21265 -11.99081 -11.84452 -11.71715 -11.63851 -11.45129 -11.07608 -10.70026 -10.61443 -10.50239 -10.31647 -10.26304 -9.90078 -9.76992 -9.61494 -9.36345 -9.12219 -9.09188 -8.47361 -5.98598 -3.95832 2.73329 3.13532 3.36793 3.43627 3.47342 3.49964 3.98005 4.16630 4.51256 4.51942 4.62627 4.76443 4.88165 4.98307 5.02721 5.14108 5.25809 5.30391 5.32677 5.34904 5.37962 5.46570 5.52448 5.63402 5.68344 5.80707 5.86683 6.01282 6.07981 6.20415 6.38718 6.47639 6.72522 6.86373 7.02690 7.27660 7.41295 7.50924 7.54056 7.87165 8.29034 8.60762 9.06693 9.64897 11.14986 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.026930 B = 0.003019 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.481389 B = 9273.282183 C = 9722.508848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.103 4.103 11 C -0.105 4.105 12 C -0.139 4.139 13 C 0.513 3.487 14 O -0.544 6.544 15 N -0.721 5.721 16 C 0.151 3.849 17 H 0.099 0.901 18 C 0.062 3.938 19 O -0.569 6.569 20 C -0.090 4.090 21 C -0.153 4.153 22 C -0.179 4.179 23 C -0.182 4.182 24 H 0.262 0.738 25 H 0.015 0.985 26 H 0.011 0.989 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.402 0.598 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.378 0.622 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.012 -17.132 -0.372 29.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.143 4.143 12 C -0.179 4.179 13 C 0.301 3.699 14 O -0.421 6.421 15 N -0.373 5.373 16 C 0.046 3.954 17 H 0.117 0.883 18 C -0.017 4.017 19 O -0.375 6.375 20 C -0.128 4.128 21 C -0.171 4.171 22 C -0.216 4.216 23 C -0.219 4.219 24 H 0.072 0.928 25 H 0.033 0.967 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.236 0.764 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.225 0.775 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.122 0.878 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 24.035 -16.411 -0.953 29.119 hybrid contribution 0.376 0.671 0.497 0.916 sum 24.412 -15.740 -0.456 29.050 Atomic orbital electron populations 1.69924 1.06310 1.26799 1.51565 1.25048 0.94731 0.99222 0.94640 0.86769 0.80431 0.83545 0.78527 1.20325 1.21478 1.18899 1.21197 0.89702 0.94378 1.50405 0.91109 1.19575 0.96871 0.92547 0.96276 1.21478 0.91789 0.99855 1.00914 1.21468 0.97122 0.92940 1.02777 1.21766 0.90405 1.01571 1.04153 1.21077 0.90894 0.83229 0.74725 1.90683 1.70638 1.31409 1.49326 1.46017 1.06225 1.09018 1.76059 1.21008 0.81222 0.99119 0.94046 0.88337 1.22671 0.98087 0.88206 0.92781 1.86444 1.81772 1.42335 1.26915 1.21364 1.01210 0.97477 0.92760 1.22334 1.04555 0.94412 0.95781 1.23041 0.92930 1.01832 1.03773 1.22956 0.97226 1.01273 1.00484 0.92837 0.96654 0.97075 0.92892 0.92861 0.91904 0.91873 0.89064 0.89076 0.76372 0.92833 0.93011 0.77544 0.90367 0.90268 0.87813 0.88734 0.88824 0.88939 0.88896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.64 13.96 55.43 0.77 -27.87 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.55 27.47 -169.99 -4.67 17.88 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 6 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 7 C -0.52 -15.26 9.66 -34.44 -0.33 -15.59 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 10 C -0.10 -2.06 5.15 -26.73 -0.14 -2.20 16 11 C -0.11 -1.81 4.50 -26.73 -0.12 -1.93 16 12 C -0.14 -1.82 5.70 -27.88 -0.16 -1.98 16 13 C 0.51 6.92 7.79 -10.98 -0.09 6.84 16 14 O -0.54 -9.39 15.64 5.56 0.09 -9.30 16 15 N -0.72 -7.27 4.75 -53.80 -0.26 -7.52 16 16 C 0.15 1.38 2.33 -67.93 -0.16 1.22 16 17 H 0.10 1.03 7.58 -51.93 -0.39 0.63 16 18 C 0.06 0.52 6.85 37.16 0.25 0.78 16 19 O -0.57 -4.52 12.83 -35.23 -0.45 -4.97 16 20 C -0.09 -0.65 4.75 -26.73 -0.13 -0.78 16 21 C -0.15 -1.14 5.47 -90.62 -0.50 -1.64 16 22 C -0.18 -1.26 10.18 -26.73 -0.27 -1.53 16 23 C -0.18 -1.22 10.25 -26.73 -0.27 -1.49 16 24 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 25 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 26 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 30 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.40 3.38 8.60 -40.82 -0.35 3.02 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.38 1.59 9.12 45.56 0.42 2.00 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.60 7.46 -51.93 -0.39 0.21 16 39 H 0.10 0.89 8.07 -51.93 -0.42 0.47 16 40 H 0.09 0.62 8.03 -51.93 -0.42 0.20 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 355.10 15.07 5.35 5.35 Total: -1.00 -34.57 355.10 -8.26 -42.83 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.97 Total: 0.58 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -2.12 Total: -16.97 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.52 Total: -35.40 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.36 Total: -14.28 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.67 Total: 17.88 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.57 -8.26 -42.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588670833.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.455 kcal (2) G-P(sol) polarization free energy of solvation -34.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds