Wall clock time and date at job start Mon Mar 30 2020 01:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00328 * 2 1 4 4 H 1.48504 * 109.46882 * 270.00024 * 3 2 1 5 5 H 1.48499 * 109.46932 * 29.99539 * 3 2 1 6 6 H 1.48495 * 109.47377 * 150.00100 * 3 2 1 7 7 C 1.37888 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99747 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99833 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46678 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46671 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46709 * 180.02562 * 11 10 9 13 13 C 1.50709 * 109.47042 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99629 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00028 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99655 * 179.97438 * 15 13 12 17 17 H 1.09001 * 109.47117 * 324.99421 * 16 15 13 18 18 C 1.52997 * 109.47195 * 85.00085 * 16 15 13 19 19 O 1.42898 * 109.47319 * 64.99855 * 18 16 15 20 20 C 1.53001 * 109.46579 * 205.00049 * 16 15 13 21 21 C 1.53000 * 109.47435 * 64.99902 * 20 16 15 22 22 C 1.52997 * 117.49967 * 243.61859 * 21 20 16 23 23 C 1.53000 * 60.00092 * 252.51319 * 22 21 20 24 24 H 0.97001 * 119.99819 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47264 * 60.00769 * 9 7 2 26 26 H 1.08994 * 109.47587 * 300.00215 * 9 7 2 27 27 H 1.09001 * 109.46497 * 60.00481 * 10 9 7 28 28 H 1.08990 * 109.47469 * 299.99973 * 10 9 7 29 29 H 1.08996 * 109.47269 * 60.00534 * 11 10 9 30 30 H 1.09003 * 109.47464 * 300.00401 * 11 10 9 31 31 H 1.09001 * 109.47503 * 60.00255 * 12 11 10 32 32 H 1.08999 * 109.47227 * 299.99693 * 12 11 10 33 33 H 0.96999 * 119.99618 * 359.97438 * 15 13 12 34 34 H 1.09002 * 109.47153 * 304.99547 * 18 16 15 35 35 H 1.09001 * 109.46832 * 184.99738 * 18 16 15 36 36 H 0.96701 * 113.99881 * 180.02562 * 19 18 16 37 37 H 1.09001 * 109.47104 * 185.00172 * 20 16 15 38 38 H 1.09007 * 109.47304 * 304.99837 * 20 16 15 39 39 H 1.08999 * 115.54714 * 29.33332 * 21 20 16 40 40 H 1.09003 * 117.49928 * 0.02562 * 22 21 20 41 41 H 1.09000 * 117.49479 * 145.01904 * 22 21 20 42 42 H 1.09000 * 117.49514 * 252.51142 * 23 22 21 43 43 H 1.09001 * 117.49907 * 107.49150 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1942 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6367 0.0014 11 6 5.5515 -2.6367 0.0001 12 6 6.0614 -4.0792 0.0009 13 6 7.5685 -4.0793 0.0003 14 8 8.1749 -3.0290 -0.0011 15 7 8.2423 -5.2465 0.0014 16 6 9.7073 -5.2465 0.0002 17 1 10.0702 -4.4055 -0.5907 18 6 10.2184 -5.1189 1.4366 19 8 9.8410 -6.2786 2.1814 20 6 10.2167 -6.5547 -0.6081 21 6 9.8108 -6.6242 -2.0816 22 6 8.8542 -7.7430 -2.4989 23 6 10.3288 -7.8072 -2.9020 24 1 -0.4850 0.8401 -0.0004 25 1 3.8752 -0.6798 0.8895 26 1 3.8746 -0.6809 -0.8904 27 1 3.6577 -3.1514 -0.8880 28 1 3.6585 -3.1495 0.8920 29 1 5.9155 -2.1218 0.8892 30 1 5.9141 -2.1239 -0.8908 31 1 5.6974 -4.5938 -0.8884 32 1 5.6988 -4.5923 0.8916 33 1 7.7572 -6.0865 0.0029 34 1 9.7842 -4.2326 1.8994 35 1 11.3047 -5.0296 1.4291 36 1 10.1323 -6.2659 3.1034 37 1 11.3031 -6.5937 -0.5283 38 1 9.7825 -7.3983 -0.0714 39 1 9.7144 -5.6640 -2.5884 40 1 8.5138 -8.4294 -1.7235 41 1 8.1281 -7.5189 -3.2803 42 1 10.5727 -7.6254 -3.9487 43 1 10.9587 -8.5360 -2.3920 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588670833.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:32 Heat of formation + Delta-G solvation = -120.801236 kcal Electronic energy + Delta-G solvation = -20301.331988 eV Core-core repulsion = 17152.078495 eV Total energy + Delta-G solvation = -3149.253493 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.98965 -38.91574 -37.62953 -36.66975 -35.45449 -34.59781 -32.39678 -31.16464 -27.80052 -27.42365 -24.15823 -23.20012 -22.33379 -21.68685 -21.47463 -21.09830 -18.85827 -18.45846 -17.80079 -17.33800 -16.87215 -16.35453 -16.06162 -15.80558 -15.45834 -15.10711 -14.86276 -14.60265 -14.16662 -14.03617 -13.84053 -13.60738 -13.41763 -13.11541 -12.83706 -12.37205 -12.32946 -12.25728 -12.08760 -12.05961 -11.75483 -11.50813 -11.34985 -11.26438 -11.19470 -10.99410 -10.83498 -10.76234 -10.62143 -10.00666 -8.29926 -6.33040 1.34715 1.36139 1.49255 1.69878 2.25539 2.35933 2.92747 3.05453 3.39950 3.55561 3.87226 3.94240 4.04319 4.10827 4.14670 4.18508 4.33036 4.39119 4.52538 4.56605 4.65345 4.66998 4.77624 4.82639 4.85577 4.87733 4.93698 5.06862 5.09729 5.15374 5.20598 5.28075 5.30027 5.41879 5.57189 5.61986 5.65707 5.68720 6.29500 6.62266 6.74963 6.85435 7.31665 7.32313 8.86806 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.026930 B = 0.003019 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.481389 B = 9273.282183 C = 9722.508848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.252 1.252 7 C -0.531 4.531 8 H 0.036 0.964 9 C -0.016 4.016 10 C -0.094 4.094 11 C -0.095 4.095 12 C -0.133 4.133 13 C 0.513 3.487 14 O -0.587 6.587 15 N -0.704 5.704 16 C 0.146 3.854 17 H 0.083 0.917 18 C 0.067 3.933 19 O -0.577 6.577 20 C -0.077 4.077 21 C -0.160 4.160 22 C -0.181 4.181 23 C -0.177 4.177 24 H 0.266 0.734 25 H 0.014 0.986 26 H 0.013 0.987 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.413 0.587 34 H 0.029 0.971 35 H 0.073 0.927 36 H 0.395 0.605 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.013 -18.097 -0.249 31.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.176 1.176 7 C -0.569 4.569 8 H 0.055 0.945 9 C -0.054 4.054 10 C -0.132 4.132 11 C -0.134 4.134 12 C -0.172 4.172 13 C 0.301 3.699 14 O -0.468 6.468 15 N -0.356 5.356 16 C 0.042 3.958 17 H 0.101 0.899 18 C -0.012 4.012 19 O -0.385 6.385 20 C -0.115 4.115 21 C -0.179 4.179 22 C -0.218 4.218 23 C -0.214 4.214 24 H 0.075 0.925 25 H 0.032 0.968 26 H 0.031 0.969 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.249 0.751 34 H 0.048 0.952 35 H 0.091 0.909 36 H 0.244 0.756 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.121 0.879 41 H 0.108 0.892 42 H 0.112 0.888 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 26.053 -17.434 -0.818 31.358 hybrid contribution -0.286 0.869 0.466 1.027 sum 25.767 -16.565 -0.353 30.634 Atomic orbital electron populations 1.70063 1.08150 1.28107 1.52890 1.26005 0.95624 1.03434 0.94250 0.85680 0.79379 0.78537 0.79207 1.19178 1.20688 1.17583 1.21553 0.92139 0.93219 1.50006 0.94533 1.19569 0.93867 0.95839 0.96086 1.21345 0.93823 0.96754 1.01256 1.21262 0.94705 0.95684 1.01711 1.21671 0.90283 0.99050 1.06211 1.21081 0.91003 0.83411 0.74386 1.90670 1.71370 1.33031 1.51721 1.45890 1.06877 1.08498 1.74323 1.21121 0.80350 0.99696 0.94678 0.89915 1.22534 0.99097 0.87493 0.92065 1.86395 1.82085 1.41735 1.28315 1.21264 1.01830 0.96138 0.92247 1.22275 1.05513 0.94074 0.96007 1.23097 0.93133 1.01638 1.03925 1.23024 0.97096 1.00717 1.00575 0.92493 0.96801 0.96875 0.92519 0.92577 0.93080 0.92928 0.86895 0.87098 0.75089 0.95236 0.90931 0.75597 0.89156 0.90014 0.89281 0.87948 0.89178 0.88772 0.87896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.08 13.96 21.45 0.30 -60.78 16 2 C 0.00 0.21 5.47 84.66 0.46 0.67 16 3 Si 0.95 46.33 27.47 68.60 1.88 48.21 16 4 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 5 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.25 -11.71 6.54 99.48 0.65 -11.06 16 7 C -0.53 -31.69 9.66 25.60 0.25 -31.45 16 8 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 9 C -0.02 -0.80 4.04 29.85 0.12 -0.68 16 10 C -0.09 -3.70 5.15 30.60 0.16 -3.55 16 11 C -0.10 -3.18 4.50 30.60 0.14 -3.04 16 12 C -0.13 -3.21 5.70 29.85 0.17 -3.04 16 13 C 0.51 13.25 7.79 87.66 0.68 13.94 16 14 O -0.59 -20.20 15.64 -3.03 -0.05 -20.25 16 15 N -0.70 -13.08 4.75 -442.53 -2.10 -15.18 16 16 C 0.15 2.47 2.33 44.99 0.10 2.58 16 17 H 0.08 1.70 7.58 -2.39 -0.02 1.68 16 18 C 0.07 1.04 6.85 71.98 0.49 1.53 16 19 O -0.58 -7.84 12.83 -148.98 -1.91 -9.75 16 20 C -0.08 -0.95 4.75 30.59 0.15 -0.80 16 21 C -0.16 -2.15 5.47 -10.79 -0.06 -2.21 16 22 C -0.18 -2.22 10.18 30.59 0.31 -1.91 16 23 C -0.18 -2.02 10.25 30.59 0.31 -1.71 16 24 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 25 H 0.01 0.68 7.20 -2.39 -0.02 0.66 16 26 H 0.01 0.63 7.57 -2.39 -0.02 0.61 16 27 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.06 2.15 8.14 -2.39 -0.02 2.14 16 29 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 30 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 31 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.41 5.95 8.60 -92.71 -0.80 5.15 16 34 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.39 2.40 9.12 -74.06 -0.68 1.73 16 37 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 1.01 7.46 -2.38 -0.02 0.99 16 39 H 0.09 1.48 8.07 -2.39 -0.02 1.46 16 40 H 0.10 1.09 8.03 -2.39 -0.02 1.07 16 41 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -75.11 355.10 0.87 -74.24 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -0.54 Total: 13.18 kcal Atomic # 6 Polarization: -32.96 SS G_CDS: 3.29 Total: -29.67 kcal Atomic # 7 Polarization: -74.17 SS G_CDS: -1.80 Total: -75.97 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -1.96 Total: -29.99 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.88 Total: 48.21 kcal Total: -75.11 0.87 -74.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588670833.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.563 kcal (2) G-P(sol) polarization free energy of solvation -75.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds