Wall clock time and date at job start Mon Mar 30 2020 01:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99698 * 2 1 4 4 H 1.48502 * 109.46853 * 270.00030 * 3 2 1 5 5 H 1.48502 * 109.47233 * 30.00088 * 3 2 1 6 6 H 1.48497 * 109.47208 * 150.00336 * 3 2 1 7 7 C 1.37871 * 120.00509 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99471 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00394 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47268 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47385 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47133 * 180.02562 * 11 10 9 13 13 C 1.50707 * 109.46804 * 180.02562 * 12 11 10 14 14 O 1.21273 * 119.99870 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99855 * 179.97438 * 13 12 11 16 16 C 1.46493 * 119.99965 * 179.97438 * 15 13 12 17 17 C 1.53007 * 109.47109 * 185.86132 * 16 15 13 18 18 C 1.53000 * 112.84847 * 294.19842 * 17 16 15 19 19 O 1.42902 * 109.47094 * 305.83395 * 18 17 16 20 20 C 1.53776 * 113.61198 * 65.39238 * 17 16 15 21 21 C 1.53785 * 87.08167 * 89.11664 * 20 17 16 22 22 C 1.53776 * 87.17115 * 25.39057 * 21 20 17 23 23 H 0.97007 * 120.00125 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.46786 * 60.00403 * 9 7 2 25 25 H 1.08999 * 109.46935 * 300.00511 * 9 7 2 26 26 H 1.09003 * 109.47191 * 59.99789 * 10 9 7 27 27 H 1.08998 * 109.47010 * 300.00310 * 10 9 7 28 28 H 1.08996 * 109.46903 * 60.00174 * 11 10 9 29 29 H 1.08999 * 109.46702 * 300.00354 * 11 10 9 30 30 H 1.08996 * 109.47295 * 60.00156 * 12 11 10 31 31 H 1.08998 * 109.46926 * 299.99890 * 12 11 10 32 32 H 0.97004 * 119.99619 * 359.97438 * 15 13 12 33 33 H 1.09004 * 109.47099 * 65.86136 * 16 15 13 34 34 H 1.08994 * 109.47173 * 305.85958 * 16 15 13 35 35 H 1.08990 * 109.47325 * 65.83717 * 18 17 16 36 36 H 1.09005 * 109.46713 * 185.84053 * 18 17 16 37 37 H 0.96698 * 113.99994 * 179.97438 * 19 18 17 38 38 H 1.09005 * 113.61698 * 334.56970 * 20 17 16 39 39 H 1.09001 * 113.61489 * 203.66343 * 20 17 16 40 40 H 1.09000 * 113.61532 * 139.98345 * 21 20 17 41 41 H 1.09002 * 113.61194 * 270.79717 * 21 20 17 42 42 H 1.08990 * 113.61678 * 89.16087 * 22 21 20 43 43 H 1.09002 * 113.61254 * 220.06370 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1939 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6363 0.0001 11 6 5.5516 -2.6363 0.0001 12 6 6.0616 -4.0788 -0.0004 13 6 7.5687 -4.0787 0.0003 14 8 8.1750 -3.0284 0.0006 15 7 8.2426 -5.2459 0.0005 16 6 9.7075 -5.2458 0.0006 17 6 10.2176 -6.6809 -0.1465 18 6 9.8707 -7.5609 1.0561 19 8 10.3413 -6.9385 2.2533 20 6 9.8699 -7.3225 -1.5000 21 6 11.1930 -6.7417 -2.0263 22 6 11.6944 -6.7678 -0.5728 23 1 -0.4851 0.8401 0.0004 24 1 3.8752 -0.6795 0.8895 25 1 3.8745 -0.6806 -0.8905 26 1 3.6579 -3.1504 -0.8897 27 1 3.6586 -3.1500 0.8903 28 1 5.9149 -2.1225 0.8901 29 1 5.9149 -2.1225 -0.8899 30 1 5.6984 -4.5923 -0.8905 31 1 5.6983 -4.5929 0.8894 32 1 7.7576 -6.0860 0.0006 33 1 10.0708 -4.8254 0.9384 34 1 10.0709 -4.6440 -0.8323 35 1 8.7898 -7.6881 1.1135 36 1 10.3458 -8.5353 0.9423 37 1 10.1552 -7.4419 3.0577 38 1 8.9862 -6.8935 -1.9725 39 1 9.8508 -8.4120 -1.4747 40 1 11.7346 -7.4183 -2.6873 41 1 11.0960 -5.7366 -2.4368 42 1 12.1750 -7.7053 -0.2935 43 1 12.2815 -5.8916 -0.2977 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588678645.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:10 Heat of formation + Delta-G solvation = -97.029401 kcal Electronic energy + Delta-G solvation = -20301.664737 eV Core-core repulsion = 17153.442068 eV Total energy + Delta-G solvation = -3148.222669 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.58191 -39.14803 -36.56606 -35.06666 -34.32308 -32.54508 -30.35317 -29.11192 -26.97456 -26.16968 -25.22594 -22.67467 -21.90278 -20.24424 -19.98715 -18.86056 -17.72878 -16.90760 -16.60969 -16.37820 -15.83012 -15.44570 -15.29580 -14.75300 -14.26610 -14.15675 -13.67156 -13.35032 -13.14472 -12.78719 -12.62002 -12.41737 -12.15297 -11.98298 -11.85859 -11.71517 -11.07739 -10.96145 -10.74952 -10.72934 -10.69958 -10.50085 -10.30367 -9.91774 -9.77554 -9.61433 -9.37458 -9.09547 -9.09074 -8.47139 -5.98422 -3.95742 2.75723 3.09147 3.37472 3.44327 3.50971 3.71730 4.07359 4.11875 4.38238 4.48440 4.52407 4.65658 4.86589 4.93342 5.06176 5.18513 5.24689 5.28595 5.30881 5.33817 5.37173 5.50046 5.53216 5.60400 5.70177 5.84698 5.88980 5.99108 6.07386 6.19821 6.34595 6.46493 6.72428 6.86652 7.02664 7.22201 7.41423 7.46162 7.54287 7.87291 8.29172 8.60692 9.06587 9.65151 11.15093 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.038501 B = 0.002730 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.088511 B =10253.791554 C =10346.604437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.102 4.102 11 C -0.106 4.106 12 C -0.138 4.138 13 C 0.512 3.488 14 O -0.538 6.538 15 N -0.734 5.734 16 C 0.148 3.852 17 C -0.096 4.096 18 C 0.091 3.909 19 O -0.567 6.567 20 C -0.130 4.130 21 C -0.143 4.143 22 C -0.120 4.120 23 H 0.262 0.738 24 H 0.016 0.984 25 H 0.011 0.989 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.397 0.603 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.045 0.955 36 H 0.048 0.952 37 H 0.379 0.621 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.508 -20.224 -0.340 31.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.144 4.144 12 C -0.178 4.178 13 C 0.299 3.701 14 O -0.414 6.414 15 N -0.387 5.387 16 C 0.024 3.976 17 C -0.096 4.096 18 C 0.013 3.987 19 O -0.372 6.372 20 C -0.168 4.168 21 C -0.180 4.180 22 C -0.158 4.158 23 H 0.072 0.928 24 H 0.034 0.966 25 H 0.029 0.971 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.231 0.769 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.226 0.774 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 24.002 -18.869 -0.767 30.540 hybrid contribution -0.119 -0.085 0.393 0.419 sum 23.883 -18.953 -0.373 30.492 Atomic orbital electron populations 1.69922 1.06311 1.26804 1.51573 1.25041 0.94734 0.99231 0.94627 0.86772 0.80452 0.83531 0.78539 1.20321 1.21474 1.18871 1.21190 0.89692 0.94368 1.50422 0.91125 1.19578 0.96870 0.92542 0.96323 1.21475 0.91760 0.99883 1.00880 1.21477 0.97126 0.92911 1.02894 1.21766 0.90335 1.01680 1.04057 1.21042 0.90812 0.83145 0.75106 1.90698 1.70648 1.31335 1.48708 1.46009 1.06913 1.08843 1.76937 1.20951 0.80080 0.93882 1.02680 1.22173 0.98278 0.95499 0.93687 1.22109 0.97470 0.94411 0.84669 1.86512 1.82958 1.51311 1.16409 1.22966 0.98819 1.00407 0.94600 1.22850 0.96775 1.01759 0.96635 1.22894 0.94524 1.02728 0.95659 0.92838 0.96605 0.97058 0.92898 0.92879 0.91801 0.91829 0.89099 0.89114 0.76946 0.90674 0.91315 0.93674 0.93393 0.77431 0.90665 0.89708 0.91158 0.89830 0.89739 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.64 13.96 55.43 0.77 -27.87 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.62 27.47 -169.99 -4.67 17.95 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.26 -6.61 6.54 56.52 0.37 -6.24 16 7 C -0.52 -15.26 9.66 -34.44 -0.33 -15.59 16 8 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 9 C -0.02 -0.39 4.04 -27.88 -0.11 -0.51 16 10 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 11 C -0.11 -1.84 4.50 -26.73 -0.12 -1.96 16 12 C -0.14 -1.81 5.70 -27.88 -0.16 -1.96 16 13 C 0.51 7.15 7.83 -10.98 -0.09 7.06 16 14 O -0.54 -9.90 15.97 5.56 0.09 -9.81 16 15 N -0.73 -7.50 5.17 -60.30 -0.31 -7.81 16 16 C 0.15 1.50 4.79 -4.04 -0.02 1.48 16 17 C -0.10 -0.68 0.68 -153.60 -0.10 -0.79 16 18 C 0.09 0.56 6.26 37.16 0.23 0.79 16 19 O -0.57 -4.32 12.92 -35.23 -0.46 -4.77 16 20 C -0.13 -0.77 7.12 -25.92 -0.18 -0.95 16 21 C -0.14 -0.89 7.72 -25.92 -0.20 -1.09 16 22 C -0.12 -0.80 7.24 -25.83 -0.19 -0.98 16 23 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 24 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 25 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 29 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.40 2.95 7.75 -40.82 -0.32 2.64 16 33 H 0.08 0.93 7.61 -51.93 -0.40 0.54 16 34 H 0.07 0.77 7.29 -51.93 -0.38 0.39 16 35 H 0.05 0.24 7.50 -51.93 -0.39 -0.15 16 36 H 0.05 0.23 8.07 -51.93 -0.42 -0.19 16 37 H 0.38 1.33 9.12 45.56 0.42 1.74 16 38 H 0.07 0.49 7.92 -51.93 -0.41 0.07 16 39 H 0.08 0.39 8.10 -51.93 -0.42 -0.03 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.58 7.61 -51.93 -0.40 0.19 16 42 H 0.08 0.48 8.05 -51.93 -0.42 0.06 16 43 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 LS Contribution 347.52 15.07 5.24 5.24 Total: -1.00 -35.62 347.52 -7.70 -43.32 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -6.86 Total: -1.41 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -1.51 Total: -14.84 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.46 Total: -35.68 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.37 Total: -14.58 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.67 Total: 17.95 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.62 -7.70 -43.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588678645.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.707 kcal (2) G-P(sol) polarization free energy of solvation -35.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds