Wall clock time and date at job start Mon Mar 30 2020 01:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99698 * 2 1 4 4 H 1.48502 * 109.46853 * 270.00030 * 3 2 1 5 5 H 1.48502 * 109.47233 * 30.00088 * 3 2 1 6 6 H 1.48497 * 109.47208 * 150.00336 * 3 2 1 7 7 C 1.37871 * 120.00509 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99471 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00394 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47268 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47385 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47133 * 180.02562 * 11 10 9 13 13 C 1.50707 * 109.46804 * 180.02562 * 12 11 10 14 14 O 1.21273 * 119.99870 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99855 * 179.97438 * 13 12 11 16 16 C 1.46493 * 119.99965 * 179.97438 * 15 13 12 17 17 C 1.53007 * 109.47109 * 185.86132 * 16 15 13 18 18 C 1.53000 * 112.84847 * 294.19842 * 17 16 15 19 19 O 1.42902 * 109.47094 * 305.83395 * 18 17 16 20 20 C 1.53776 * 113.61198 * 65.39238 * 17 16 15 21 21 C 1.53785 * 87.08167 * 89.11664 * 20 17 16 22 22 C 1.53776 * 87.17115 * 25.39057 * 21 20 17 23 23 H 0.97007 * 120.00125 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.46786 * 60.00403 * 9 7 2 25 25 H 1.08999 * 109.46935 * 300.00511 * 9 7 2 26 26 H 1.09003 * 109.47191 * 59.99789 * 10 9 7 27 27 H 1.08998 * 109.47010 * 300.00310 * 10 9 7 28 28 H 1.08996 * 109.46903 * 60.00174 * 11 10 9 29 29 H 1.08999 * 109.46702 * 300.00354 * 11 10 9 30 30 H 1.08996 * 109.47295 * 60.00156 * 12 11 10 31 31 H 1.08998 * 109.46926 * 299.99890 * 12 11 10 32 32 H 0.97004 * 119.99619 * 359.97438 * 15 13 12 33 33 H 1.09004 * 109.47099 * 65.86136 * 16 15 13 34 34 H 1.08994 * 109.47173 * 305.85958 * 16 15 13 35 35 H 1.08990 * 109.47325 * 65.83717 * 18 17 16 36 36 H 1.09005 * 109.46713 * 185.84053 * 18 17 16 37 37 H 0.96698 * 113.99994 * 179.97438 * 19 18 17 38 38 H 1.09005 * 113.61698 * 334.56970 * 20 17 16 39 39 H 1.09001 * 113.61489 * 203.66343 * 20 17 16 40 40 H 1.09000 * 113.61532 * 139.98345 * 21 20 17 41 41 H 1.09002 * 113.61194 * 270.79717 * 21 20 17 42 42 H 1.08990 * 113.61678 * 89.16087 * 22 21 20 43 43 H 1.09002 * 113.61254 * 220.06370 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1939 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6363 0.0001 11 6 5.5516 -2.6363 0.0001 12 6 6.0616 -4.0788 -0.0004 13 6 7.5687 -4.0787 0.0003 14 8 8.1750 -3.0284 0.0006 15 7 8.2426 -5.2459 0.0005 16 6 9.7075 -5.2458 0.0006 17 6 10.2176 -6.6809 -0.1465 18 6 9.8707 -7.5609 1.0561 19 8 10.3413 -6.9385 2.2533 20 6 9.8699 -7.3225 -1.5000 21 6 11.1930 -6.7417 -2.0263 22 6 11.6944 -6.7678 -0.5728 23 1 -0.4851 0.8401 0.0004 24 1 3.8752 -0.6795 0.8895 25 1 3.8745 -0.6806 -0.8905 26 1 3.6579 -3.1504 -0.8897 27 1 3.6586 -3.1500 0.8903 28 1 5.9149 -2.1225 0.8901 29 1 5.9149 -2.1225 -0.8899 30 1 5.6984 -4.5923 -0.8905 31 1 5.6983 -4.5929 0.8894 32 1 7.7576 -6.0860 0.0006 33 1 10.0708 -4.8254 0.9384 34 1 10.0709 -4.6440 -0.8323 35 1 8.7898 -7.6881 1.1135 36 1 10.3458 -8.5353 0.9423 37 1 10.1552 -7.4419 3.0577 38 1 8.9862 -6.8935 -1.9725 39 1 9.8508 -8.4120 -1.4747 40 1 11.7346 -7.4183 -2.6873 41 1 11.0960 -5.7366 -2.4368 42 1 12.1750 -7.7053 -0.2935 43 1 12.2815 -5.8916 -0.2977 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588678645.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:10 Heat of formation + Delta-G solvation = -123.356210 kcal Electronic energy + Delta-G solvation = -20302.806353 eV Core-core repulsion = 17153.442068 eV Total energy + Delta-G solvation = -3149.364285 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.31514 -40.09255 -37.06227 -36.69962 -35.33596 -34.59745 -31.98608 -29.89559 -28.10882 -26.86305 -26.38213 -23.77123 -22.98787 -21.74687 -21.30865 -19.49718 -18.85143 -18.22518 -17.82755 -17.19300 -16.91758 -16.42651 -16.23250 -15.92876 -15.56793 -15.21511 -14.90610 -14.59367 -14.22944 -13.93877 -13.75321 -13.57045 -13.49540 -13.23821 -12.87023 -12.79487 -12.42434 -12.33582 -12.07298 -11.75648 -11.51968 -11.48863 -11.34790 -11.27093 -11.25885 -11.23973 -10.84943 -10.76075 -10.70578 -10.06373 -8.29810 -6.32726 1.34622 1.36145 1.49179 1.66843 2.18857 2.35898 3.05639 3.25261 3.51987 3.58787 3.86747 3.88560 3.96555 4.04112 4.15321 4.16364 4.45389 4.53912 4.60429 4.63937 4.65973 4.76853 4.79509 4.82361 4.85408 4.87711 4.93809 5.08159 5.13505 5.14819 5.21146 5.27568 5.31983 5.45983 5.49197 5.60828 5.65955 5.68739 6.29551 6.56093 6.75166 6.93788 7.28507 7.32198 8.86769 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.038501 B = 0.002730 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.088511 B =10253.791554 C =10346.604437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.253 1.253 7 C -0.530 4.530 8 H 0.038 0.962 9 C -0.017 4.017 10 C -0.093 4.093 11 C -0.098 4.098 12 C -0.130 4.130 13 C 0.510 3.490 14 O -0.590 6.590 15 N -0.713 5.713 16 C 0.151 3.849 17 C -0.097 4.097 18 C 0.089 3.911 19 O -0.592 6.592 20 C -0.121 4.121 21 C -0.145 4.145 22 C -0.121 4.121 23 H 0.266 0.734 24 H 0.013 0.987 25 H 0.012 0.988 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.414 0.586 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.395 0.605 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.099 0.901 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.818 -21.873 -0.516 33.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.177 1.177 7 C -0.568 4.568 8 H 0.056 0.944 9 C -0.055 4.055 10 C -0.131 4.131 11 C -0.136 4.136 12 C -0.169 4.169 13 C 0.298 3.702 14 O -0.470 6.470 15 N -0.365 5.365 16 C 0.027 3.973 17 C -0.097 4.097 18 C 0.012 3.988 19 O -0.401 6.401 20 C -0.158 4.158 21 C -0.182 4.182 22 C -0.159 4.159 23 H 0.075 0.925 24 H 0.031 0.969 25 H 0.031 0.969 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.136 0.864 31 H 0.133 0.867 32 H 0.251 0.749 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.244 0.756 38 H 0.089 0.911 39 H 0.125 0.875 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.118 0.882 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 25.314 -20.588 -0.936 32.643 hybrid contribution -0.552 0.354 0.465 0.804 sum 24.762 -20.234 -0.471 31.981 Atomic orbital electron populations 1.70057 1.08095 1.28081 1.52916 1.25980 0.95613 1.03360 0.94301 0.85702 0.79362 0.78681 0.79189 1.19193 1.20688 1.17725 1.21544 0.92076 0.93244 1.49925 0.94379 1.19579 0.93929 0.95933 0.96045 1.21336 0.93606 0.96717 1.01411 1.21283 0.94881 0.95798 1.01662 1.21674 0.89558 0.99104 1.06585 1.21207 0.91230 0.83234 0.74499 1.90684 1.71599 1.33306 1.51436 1.45809 1.07065 1.08653 1.74999 1.20871 0.79779 0.95996 1.00694 1.22136 0.98621 0.93693 0.95284 1.22204 0.98309 0.94668 0.83637 1.86476 1.83344 1.52563 1.17672 1.22966 0.98211 1.01545 0.93081 1.22846 0.97393 1.01392 0.96586 1.22936 0.94143 1.02819 0.95960 0.92501 0.96896 0.96939 0.92293 0.92421 0.93242 0.93023 0.86398 0.86654 0.74893 0.93185 0.92864 0.92615 0.91374 0.75583 0.91097 0.87482 0.89870 0.91280 0.88216 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.90 13.96 21.44 0.30 -60.60 16 2 C 0.00 0.25 5.47 84.65 0.46 0.71 16 3 Si 0.95 46.47 27.47 68.60 1.88 48.36 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.25 -11.90 6.54 99.48 0.65 -11.24 16 7 C -0.53 -31.49 9.66 25.60 0.25 -31.25 16 8 H 0.04 2.44 7.99 -2.91 -0.02 2.41 16 9 C -0.02 -0.86 4.04 29.85 0.12 -0.74 16 10 C -0.09 -3.62 5.15 30.59 0.16 -3.47 16 11 C -0.10 -3.28 4.50 30.59 0.14 -3.14 16 12 C -0.13 -3.06 5.70 29.85 0.17 -2.89 16 13 C 0.51 13.64 7.83 87.66 0.69 14.33 16 14 O -0.59 -21.86 15.97 -3.01 -0.05 -21.91 16 15 N -0.71 -13.41 5.17 -463.07 -2.40 -15.80 16 16 C 0.15 3.01 4.79 86.38 0.41 3.42 16 17 C -0.10 -1.21 0.68 -51.60 -0.04 -1.24 16 18 C 0.09 0.86 6.26 71.98 0.45 1.31 16 19 O -0.59 -8.08 12.92 -148.98 -1.93 -10.00 16 20 C -0.12 -1.10 7.12 31.12 0.22 -0.88 16 21 C -0.14 -1.58 7.72 31.12 0.24 -1.34 16 22 C -0.12 -1.44 7.24 31.18 0.23 -1.21 16 23 H 0.27 15.88 8.31 -92.70 -0.77 15.11 16 24 H 0.01 0.63 7.20 -2.39 -0.02 0.62 16 25 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 26 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 29 H 0.05 1.84 8.10 -2.39 -0.02 1.82 16 30 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.41 4.95 7.75 -92.71 -0.72 4.23 16 33 H 0.05 1.27 7.61 -2.39 -0.02 1.25 16 34 H 0.05 1.23 7.29 -2.39 -0.02 1.21 16 35 H 0.06 0.41 7.50 -2.39 -0.02 0.39 16 36 H 0.07 0.41 8.07 -2.38 -0.02 0.39 16 37 H 0.39 2.08 9.12 -74.06 -0.68 1.40 16 38 H 0.07 0.73 7.92 -2.38 -0.02 0.71 16 39 H 0.11 0.55 8.10 -2.39 -0.02 0.53 16 40 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.07 0.95 7.61 -2.39 -0.02 0.93 16 42 H 0.10 0.90 8.05 -2.39 -0.02 0.88 16 43 H 0.06 0.86 8.10 -2.39 -0.02 0.84 16 Total: -1.00 -78.52 347.52 0.85 -77.67 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -0.46 Total: 8.67 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: 3.50 Total: -26.38 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -2.10 Total: -76.40 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -1.97 Total: -31.91 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.88 Total: 48.36 kcal Total: -78.52 0.85 -77.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588678645.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.684 kcal (2) G-P(sol) polarization free energy of solvation -78.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds