Wall clock time and date at job start Mon Mar 30 2020 01:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86790 * 120.00365 * 2 1 4 4 H 1.48504 * 109.47154 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47006 * 299.99851 * 3 2 1 6 6 H 1.48502 * 109.47450 * 59.99957 * 3 2 1 7 7 C 1.37878 * 119.99368 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99598 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00264 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47141 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46996 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47098 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47243 * 179.97438 * 12 11 10 14 14 O 1.21281 * 119.99965 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00024 * 179.97438 * 13 12 11 16 16 C 1.46496 * 120.00083 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.47511 * 180.02562 * 16 15 13 18 18 H 1.09004 * 110.05363 * 306.41713 * 17 16 15 19 19 C 1.54268 * 110.03357 * 67.82828 * 17 16 15 20 20 C 1.55022 * 104.27752 * 142.80463 * 19 17 16 21 21 C 1.54885 * 102.68779 * 322.23443 * 20 19 17 22 22 H 1.08998 * 110.48656 * 279.02879 * 21 20 19 23 23 O 1.42905 * 110.48602 * 156.51541 * 21 20 19 24 24 C 1.53874 * 110.03537 * 184.99937 * 17 16 15 25 25 H 0.97006 * 119.99455 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47054 * 59.99978 * 9 7 2 27 27 H 1.09007 * 109.47196 * 299.99827 * 9 7 2 28 28 H 1.08995 * 109.46791 * 59.99770 * 10 9 7 29 29 H 1.09000 * 109.47109 * 300.00216 * 10 9 7 30 30 H 1.08993 * 109.47326 * 59.99771 * 11 10 9 31 31 H 1.09007 * 109.47070 * 299.99530 * 11 10 9 32 32 H 1.09006 * 109.47560 * 59.99407 * 12 11 10 33 33 H 1.09000 * 109.46925 * 299.99923 * 12 11 10 34 34 H 0.97006 * 120.00122 * 0.02562 * 15 13 12 35 35 H 1.08993 * 109.47131 * 60.00048 * 16 15 13 36 36 H 1.09007 * 109.47060 * 299.99933 * 16 15 13 37 37 H 1.09000 * 110.48571 * 261.57756 * 19 17 16 38 38 H 1.08998 * 110.48558 * 24.08976 * 19 17 16 39 39 H 1.09007 * 110.87568 * 203.89922 * 20 19 17 40 40 H 1.09009 * 110.69873 * 80.48969 * 20 19 17 41 41 H 0.96696 * 114.00036 * 63.24528 * 23 21 20 42 42 H 1.09005 * 110.02922 * 121.42785 * 24 17 16 43 43 H 1.08999 * 110.02807 * 359.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3461 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0018 11 6 1.4799 -4.9872 0.0012 12 6 2.4740 -6.1501 0.0031 13 6 1.7204 -7.4552 0.0031 14 8 0.5076 -7.4551 0.0022 15 7 2.3942 -8.6224 0.0042 16 6 1.6617 -9.8911 0.0036 17 6 2.6558 -11.0541 0.0057 18 1 3.3620 -10.9437 -0.8173 19 6 3.4129 -11.0999 1.3490 20 6 3.5741 -12.6129 1.6457 21 6 2.2301 -13.2019 1.1500 22 1 1.4526 -13.0631 1.9013 23 8 2.3774 -14.5878 0.8345 24 6 1.9038 -12.3906 -0.1209 25 1 -0.4849 0.8401 0.0004 26 1 0.6245 -2.5571 -0.8896 27 1 0.6238 -2.5567 0.8903 28 1 2.8709 -3.6041 0.8922 29 1 2.8724 -3.6049 -0.8877 30 1 0.8542 -5.0450 -0.8894 31 1 0.8523 -5.0447 0.8906 32 1 3.0995 -6.0921 0.8940 33 1 3.1020 -6.0928 -0.8860 34 1 3.3643 -8.6225 0.0053 35 1 1.0361 -9.9490 -0.8871 36 1 1.0340 -9.9486 0.8929 37 1 4.3883 -10.6230 1.2536 38 1 2.8286 -10.6178 2.1328 39 1 3.7019 -12.7878 2.7140 40 1 4.4094 -13.0291 1.0823 41 1 2.6110 -15.1411 1.5924 42 1 2.2450 -12.9287 -1.0053 43 1 0.8306 -12.2107 -0.1833 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588710500.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:37 Heat of formation + Delta-G solvation = -133.126590 kcal Electronic energy + Delta-G solvation = -19774.323613 eV Core-core repulsion = 16624.535653 eV Total energy + Delta-G solvation = -3149.787960 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.98703 -39.02366 -36.30840 -34.88259 -34.08668 -32.59874 -30.39610 -29.44865 -28.42876 -25.88071 -24.39816 -22.21362 -21.34322 -20.59603 -19.98328 -19.75768 -18.09314 -16.85994 -16.30487 -16.05229 -15.98883 -15.58212 -14.71643 -14.53789 -14.41121 -14.22764 -13.75584 -13.46426 -12.98376 -12.80633 -12.57434 -12.15639 -11.93880 -11.70753 -11.64546 -11.53921 -11.32187 -11.14271 -10.98335 -10.96459 -10.51490 -10.47100 -10.38970 -10.33418 -9.78659 -9.59328 -9.19893 -9.14500 -8.95125 -8.29388 -5.93958 -3.96305 2.76200 3.11339 3.33951 3.41050 3.45058 3.71282 4.05084 4.15072 4.30487 4.50105 4.73973 4.84538 4.92059 4.96757 5.01575 5.09811 5.20524 5.34926 5.38486 5.40511 5.41716 5.47648 5.51239 5.55223 5.73830 5.75560 5.88021 5.92396 6.16638 6.32355 6.35242 6.57586 6.86691 7.04785 7.18740 7.22317 7.45934 7.76183 7.92179 8.07828 8.29696 8.49635 9.11692 9.67237 11.17406 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.066100 B = 0.002214 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.501245 B =12641.982909 C =12879.190748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.139 4.139 13 C 0.511 3.489 14 O -0.536 6.536 15 N -0.739 5.739 16 C 0.125 3.875 17 C -0.102 4.102 18 H 0.083 0.917 19 C -0.120 4.120 20 C -0.158 4.158 21 C 0.096 3.904 22 H 0.063 0.937 23 O -0.567 6.567 24 C -0.111 4.111 25 H 0.259 0.741 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.399 0.601 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.378 0.622 42 H 0.080 0.920 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.888 -28.297 2.722 29.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.147 4.147 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.179 4.179 13 C 0.298 3.702 14 O -0.412 6.412 15 N -0.392 5.392 16 C 0.001 3.999 17 C -0.121 4.121 18 H 0.101 0.899 19 C -0.158 4.158 20 C -0.195 4.195 21 C 0.038 3.962 22 H 0.081 0.919 23 O -0.372 6.372 24 C -0.149 4.149 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.233 0.767 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.225 0.775 42 H 0.098 0.902 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.680 -27.954 2.115 29.067 hybrid contribution 1.076 0.743 0.592 1.436 sum 8.757 -27.211 2.708 28.713 Atomic orbital electron populations 1.69991 1.06039 1.26365 1.51057 1.25053 0.94858 0.99259 0.95517 0.86550 0.80066 0.83922 0.77528 1.19792 1.21061 1.21072 1.21326 0.93017 0.91198 1.50201 0.92704 1.19108 0.94086 0.91298 0.97327 1.21650 0.99065 0.94030 1.00045 1.21447 0.97032 0.92718 1.02941 1.21792 1.00080 0.92072 1.03925 1.21107 0.88453 0.85614 0.75015 1.90708 1.14284 1.87709 1.48489 1.46095 1.10217 1.05688 1.77213 1.21464 0.94101 0.81927 1.02409 1.21980 0.97331 0.93953 0.98823 0.89864 1.22417 1.00700 0.95904 0.96790 1.23233 0.98581 0.96373 1.01344 1.22726 0.95813 0.80989 0.96716 0.91856 1.86513 1.93100 1.18456 1.39148 1.22065 1.00982 0.93831 0.98060 0.93118 0.96572 0.96588 0.93494 0.93494 0.91819 0.91840 0.89199 0.89183 0.76710 0.91494 0.91473 0.91044 0.90832 0.91236 0.90481 0.77495 0.90152 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.71 13.29 55.43 0.74 -26.97 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.52 -15.08 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 11 C -0.10 -1.87 4.50 -26.74 -0.12 -2.00 16 12 C -0.14 -1.84 5.70 -27.89 -0.16 -2.00 16 13 C 0.51 7.11 7.83 -10.99 -0.09 7.02 16 14 O -0.54 -9.90 15.98 5.56 0.09 -9.81 16 15 N -0.74 -7.17 5.40 -60.30 -0.33 -7.49 16 16 C 0.12 1.12 4.73 -4.04 -0.02 1.10 16 17 C -0.10 -0.65 2.96 -89.50 -0.27 -0.91 16 18 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 19 C -0.12 -0.68 6.09 -25.00 -0.15 -0.83 16 20 C -0.16 -0.83 6.63 -24.67 -0.16 -0.99 16 21 C 0.10 0.61 4.23 -25.07 -0.11 0.50 16 22 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 23 O -0.57 -3.92 13.37 -35.23 -0.47 -4.40 16 24 C -0.11 -0.76 6.22 -25.61 -0.16 -0.92 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.06 1.24 8.10 -51.93 -0.42 0.81 16 31 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.40 2.71 8.36 -40.82 -0.34 2.37 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.67 8.00 -51.93 -0.42 0.25 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.47 7.76 -51.93 -0.40 0.06 16 39 H 0.07 0.31 8.14 -51.92 -0.42 -0.12 16 40 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 41 H 0.38 1.06 9.12 45.56 0.42 1.47 16 42 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 43 H 0.08 0.53 7.67 -51.93 -0.40 0.13 16 LS Contribution 351.41 15.07 5.30 5.30 Total: -1.00 -35.21 351.41 -8.63 -43.84 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -7.02 Total: -2.47 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -1.92 Total: -15.01 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.41 Total: -34.46 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.38 Total: -14.20 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.21 -8.63 -43.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588710500.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.290 kcal (2) G-P(sol) polarization free energy of solvation -35.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds