Wall clock time and date at job start Mon Mar 30 2020 01:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86790 * 120.00365 * 2 1 4 4 H 1.48504 * 109.47154 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47006 * 299.99851 * 3 2 1 6 6 H 1.48502 * 109.47450 * 59.99957 * 3 2 1 7 7 C 1.37878 * 119.99368 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99598 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00264 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47141 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46996 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47098 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47243 * 179.97438 * 12 11 10 14 14 O 1.21281 * 119.99965 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00024 * 179.97438 * 13 12 11 16 16 C 1.46496 * 120.00083 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.47511 * 180.02562 * 16 15 13 18 18 H 1.09004 * 110.05363 * 306.41713 * 17 16 15 19 19 C 1.54268 * 110.03357 * 67.82828 * 17 16 15 20 20 C 1.55022 * 104.27752 * 142.80463 * 19 17 16 21 21 C 1.54885 * 102.68779 * 322.23443 * 20 19 17 22 22 H 1.08998 * 110.48656 * 279.02879 * 21 20 19 23 23 O 1.42905 * 110.48602 * 156.51541 * 21 20 19 24 24 C 1.53874 * 110.03537 * 184.99937 * 17 16 15 25 25 H 0.97006 * 119.99455 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47054 * 59.99978 * 9 7 2 27 27 H 1.09007 * 109.47196 * 299.99827 * 9 7 2 28 28 H 1.08995 * 109.46791 * 59.99770 * 10 9 7 29 29 H 1.09000 * 109.47109 * 300.00216 * 10 9 7 30 30 H 1.08993 * 109.47326 * 59.99771 * 11 10 9 31 31 H 1.09007 * 109.47070 * 299.99530 * 11 10 9 32 32 H 1.09006 * 109.47560 * 59.99407 * 12 11 10 33 33 H 1.09000 * 109.46925 * 299.99923 * 12 11 10 34 34 H 0.97006 * 120.00122 * 0.02562 * 15 13 12 35 35 H 1.08993 * 109.47131 * 60.00048 * 16 15 13 36 36 H 1.09007 * 109.47060 * 299.99933 * 16 15 13 37 37 H 1.09000 * 110.48571 * 261.57756 * 19 17 16 38 38 H 1.08998 * 110.48558 * 24.08976 * 19 17 16 39 39 H 1.09007 * 110.87568 * 203.89922 * 20 19 17 40 40 H 1.09009 * 110.69873 * 80.48969 * 20 19 17 41 41 H 0.96696 * 114.00036 * 63.24528 * 23 21 20 42 42 H 1.09005 * 110.02922 * 121.42785 * 24 17 16 43 43 H 1.08999 * 110.02807 * 359.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3461 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0018 11 6 1.4799 -4.9872 0.0012 12 6 2.4740 -6.1501 0.0031 13 6 1.7204 -7.4552 0.0031 14 8 0.5076 -7.4551 0.0022 15 7 2.3942 -8.6224 0.0042 16 6 1.6617 -9.8911 0.0036 17 6 2.6558 -11.0541 0.0057 18 1 3.3620 -10.9437 -0.8173 19 6 3.4129 -11.0999 1.3490 20 6 3.5741 -12.6129 1.6457 21 6 2.2301 -13.2019 1.1500 22 1 1.4526 -13.0631 1.9013 23 8 2.3774 -14.5878 0.8345 24 6 1.9038 -12.3906 -0.1209 25 1 -0.4849 0.8401 0.0004 26 1 0.6245 -2.5571 -0.8896 27 1 0.6238 -2.5567 0.8903 28 1 2.8709 -3.6041 0.8922 29 1 2.8724 -3.6049 -0.8877 30 1 0.8542 -5.0450 -0.8894 31 1 0.8523 -5.0447 0.8906 32 1 3.0995 -6.0921 0.8940 33 1 3.1020 -6.0928 -0.8860 34 1 3.3643 -8.6225 0.0053 35 1 1.0361 -9.9490 -0.8871 36 1 1.0340 -9.9486 0.8929 37 1 4.3883 -10.6230 1.2536 38 1 2.8286 -10.6178 2.1328 39 1 3.7019 -12.7878 2.7140 40 1 4.4094 -13.0291 1.0823 41 1 2.6110 -15.1411 1.5924 42 1 2.2450 -12.9287 -1.0053 43 1 0.8306 -12.2107 -0.1833 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588710500.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:37 Heat of formation + Delta-G solvation = -158.723142 kcal Electronic energy + Delta-G solvation = -19775.433563 eV Core-core repulsion = 16624.535653 eV Total energy + Delta-G solvation = -3150.897910 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.91351 -39.71862 -37.01944 -36.54243 -34.93175 -34.59159 -31.72455 -30.43177 -29.09717 -27.46717 -25.45064 -23.81600 -21.94377 -21.69183 -21.40365 -20.52108 -18.59396 -18.41629 -17.85561 -17.04154 -16.97886 -16.49576 -16.38205 -15.69982 -15.28490 -14.90475 -14.61785 -14.54450 -14.51445 -13.80818 -13.58007 -13.51953 -13.37250 -13.17886 -12.83811 -12.50356 -12.30678 -12.15460 -12.13980 -12.12337 -11.87911 -11.62129 -11.47294 -11.36880 -11.34912 -11.14388 -10.79566 -10.74144 -10.55556 -10.07766 -8.18563 -6.30662 1.40612 1.41673 1.55171 1.67793 2.22409 2.42337 3.14113 3.26887 3.53919 3.67201 3.77799 3.90617 4.08813 4.16325 4.23610 4.35889 4.41699 4.49145 4.59072 4.66438 4.70531 4.74042 4.84060 4.86635 4.87604 4.91193 4.95710 5.08918 5.20635 5.22779 5.29302 5.34458 5.36261 5.40218 5.50753 5.58666 5.78907 5.88738 6.25714 6.59157 6.88162 6.89783 7.30971 7.38918 8.93900 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.066100 B = 0.002214 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.501245 B =12641.982909 C =12879.190748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.009 4.009 3 Si 0.971 3.029 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.017 3.983 10 C -0.096 4.096 11 C -0.097 4.097 12 C -0.128 4.128 13 C 0.509 3.491 14 O -0.592 6.592 15 N -0.716 5.716 16 C 0.125 3.875 17 C -0.090 4.090 18 H 0.095 0.905 19 C -0.119 4.119 20 C -0.150 4.150 21 C 0.093 3.907 22 H 0.065 0.935 23 O -0.585 6.585 24 C -0.115 4.115 25 H 0.263 0.737 26 H -0.016 1.016 27 H -0.016 1.016 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.418 0.582 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.394 0.606 42 H 0.074 0.926 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.037 -28.773 3.027 31.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.795 3.205 4 H -0.180 1.180 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.020 4.020 10 C -0.133 4.133 11 C -0.135 4.135 12 C -0.168 4.168 13 C 0.297 3.703 14 O -0.472 6.472 15 N -0.369 5.369 16 C 0.002 3.998 17 C -0.108 4.108 18 H 0.113 0.887 19 C -0.157 4.157 20 C -0.188 4.188 21 C 0.035 3.965 22 H 0.083 0.917 23 O -0.393 6.393 24 C -0.153 4.153 25 H 0.071 0.929 26 H 0.002 0.998 27 H 0.003 0.997 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.255 0.745 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.244 0.756 42 H 0.093 0.907 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.895 -28.479 2.431 30.588 hybrid contribution 0.042 0.820 0.498 0.960 sum 10.936 -27.659 2.928 29.886 Atomic orbital electron populations 1.70146 1.08077 1.27666 1.51978 1.26120 0.95821 1.03824 0.94854 0.85312 0.79199 0.78335 0.77653 1.18031 1.20507 1.20493 1.21791 0.93773 0.92191 1.50043 0.91507 1.19076 0.94740 0.93887 0.94295 1.21449 0.97792 0.92701 1.01361 1.21247 0.97551 0.93766 1.00933 1.21672 0.98885 0.89446 1.06750 1.21218 0.87742 0.86852 0.74477 1.90699 1.16646 1.88463 1.51405 1.45882 1.11153 1.04787 1.75089 1.21494 0.94677 0.82414 1.01255 1.21882 0.96692 0.92304 0.99958 0.88695 1.22425 1.01106 0.96333 0.95811 1.23175 0.97773 0.95803 1.02016 1.22753 0.96619 0.80859 0.96293 0.91717 1.86468 1.93258 1.18957 1.40666 1.22080 1.00678 0.94219 0.98363 0.92877 0.99758 0.99734 0.91981 0.92044 0.94015 0.93958 0.86225 0.86319 0.74492 0.92870 0.92604 0.89549 0.91471 0.90114 0.90427 0.75589 0.90685 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.42 13.29 21.45 0.28 -59.14 16 2 C -0.01 -0.54 5.46 84.66 0.46 -0.08 16 3 Si 0.97 45.01 29.54 68.60 2.03 47.03 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 7 C -0.54 -31.49 9.11 25.60 0.23 -31.26 16 8 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 9 C 0.02 0.95 4.97 29.85 0.15 1.10 16 10 C -0.10 -3.91 5.15 30.60 0.16 -3.76 16 11 C -0.10 -3.52 4.50 30.59 0.14 -3.38 16 12 C -0.13 -3.10 5.70 29.85 0.17 -2.93 16 13 C 0.51 13.62 7.83 87.66 0.69 14.31 16 14 O -0.59 -22.35 15.98 -3.03 -0.05 -22.40 16 15 N -0.72 -12.47 5.40 -463.06 -2.50 -14.97 16 16 C 0.13 2.15 4.73 86.38 0.41 2.56 16 17 C -0.09 -0.98 2.96 -10.07 -0.03 -1.01 16 18 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 19 C -0.12 -1.05 6.09 31.72 0.19 -0.86 16 20 C -0.15 -1.24 6.63 31.93 0.21 -1.03 16 21 C 0.09 1.06 4.23 31.67 0.13 1.19 16 22 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 23 O -0.59 -7.41 13.37 -148.98 -1.99 -9.40 16 24 C -0.12 -1.48 6.22 31.32 0.19 -1.29 16 25 H 0.26 15.52 8.31 -92.70 -0.77 14.75 16 26 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 27 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 28 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 31 H 0.04 1.69 8.10 -2.38 -0.02 1.67 16 32 H 0.12 2.25 8.14 -2.38 -0.02 2.23 16 33 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.42 4.23 8.36 -92.70 -0.77 3.45 16 35 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 1.11 8.00 -2.38 -0.02 1.09 16 37 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.07 0.71 7.76 -2.39 -0.02 0.69 16 39 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 40 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 41 H 0.39 1.67 9.12 -74.06 -0.68 1.00 16 42 H 0.07 1.05 8.07 -2.38 -0.02 1.03 16 43 H 0.07 0.97 7.67 -2.39 -0.02 0.95 16 Total: -1.00 -78.68 351.41 0.41 -78.27 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -0.47 Total: 7.05 kcal Atomic # 6 Polarization: -29.55 SS G_CDS: 3.11 Total: -26.44 kcal Atomic # 7 Polarization: -71.89 SS G_CDS: -2.22 Total: -74.11 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -2.04 Total: -31.80 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -78.68 0.41 -78.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588710500.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.450 kcal (2) G-P(sol) polarization free energy of solvation -78.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds