Wall clock time and date at job start Mon Mar 30 2020 01:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48503 * 109.47086 * 239.99991 * 3 2 1 5 5 H 1.48494 * 109.47288 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46879 * 119.99935 * 3 2 1 7 7 C 1.37876 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99844 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46623 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46953 * 179.97438 * 12 11 10 14 14 O 1.21279 * 119.99692 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00146 * 180.02562 * 13 12 11 16 16 C 1.46496 * 119.99875 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.47037 * 179.97438 * 16 15 13 18 18 H 1.08995 * 110.43648 * 54.29547 * 17 16 15 19 19 C 1.54895 * 110.48243 * 291.75253 * 17 16 15 20 20 C 1.54895 * 102.74595 * 203.37863 * 19 17 16 21 21 C 1.54266 * 104.19400 * 37.94586 * 20 19 17 22 22 H 1.09000 * 110.03051 * 95.67276 * 21 20 19 23 23 O 1.42897 * 110.03063 * 217.05250 * 21 20 19 24 24 C 1.54085 * 106.62152 * 336.27772 * 21 20 19 25 25 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 27 27 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 28 28 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 29 29 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 30 30 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 31 31 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 32 32 H 1.09000 * 109.47486 * 299.99829 * 12 11 10 33 33 H 1.09001 * 109.47362 * 60.00551 * 12 11 10 34 34 H 0.96999 * 120.00043 * 359.97438 * 15 13 12 35 35 H 1.09000 * 109.46876 * 299.99570 * 16 15 13 36 36 H 1.08996 * 109.47565 * 59.99371 * 16 15 13 37 37 H 1.08994 * 110.75920 * 321.69689 * 19 17 16 38 38 H 1.08999 * 110.75489 * 85.07074 * 19 17 16 39 39 H 1.09005 * 110.48341 * 156.62384 * 20 19 17 40 40 H 1.08993 * 110.48464 * 279.26518 * 20 19 17 41 41 H 0.96701 * 114.00505 * 298.54872 * 23 21 20 42 42 H 1.09005 * 110.15808 * 240.87715 * 24 21 20 43 43 H 1.08998 * 110.00326 * 119.38928 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0018 13 6 1.7210 -7.4552 -0.0018 14 8 0.5082 -7.4551 -0.0018 15 7 2.3948 -8.6224 -0.0018 16 6 1.6623 -9.8910 -0.0024 17 6 2.6566 -11.0540 -0.0029 18 1 3.3569 -10.9563 0.8265 19 6 3.4175 -11.1159 -1.3506 20 6 3.8696 -12.5958 -1.4201 21 6 2.6818 -13.3824 -0.8285 22 1 2.0353 -13.7409 -1.6295 23 8 3.1610 -14.4851 -0.0562 24 6 1.9107 -12.4020 0.0761 25 1 -0.4851 0.8400 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 2.8719 -3.6045 0.8894 29 1 2.8719 -3.6044 -0.8905 30 1 0.8533 -5.0451 0.8886 31 1 0.8538 -5.0445 -0.8914 32 1 3.1011 -6.0919 -0.8918 33 1 3.1011 -6.0928 0.8882 34 1 3.3648 -8.6224 -0.0022 35 1 1.0354 -9.9490 0.8874 36 1 1.0359 -9.9486 -0.8925 37 1 2.7533 -10.8755 -2.1807 38 1 4.2795 -10.4489 -1.3385 39 1 4.0466 -12.8924 -2.4540 40 1 4.7660 -12.7493 -0.8194 41 1 3.6737 -15.1282 -0.5648 42 1 1.9038 -12.7653 1.1039 43 1 0.8892 -12.2854 -0.2858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588710501.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:39 Heat of formation + Delta-G solvation = -158.980964 kcal Electronic energy + Delta-G solvation = -19759.156101 eV Core-core repulsion = 16608.247011 eV Total energy + Delta-G solvation = -3150.909090 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.89673 -39.72479 -36.99345 -36.52821 -34.91625 -34.58793 -31.73144 -30.44470 -29.10746 -27.46505 -25.43763 -23.81656 -21.88578 -21.59218 -21.46801 -20.61969 -18.56014 -18.40689 -17.85851 -17.05560 -16.95514 -16.49439 -16.31821 -15.71571 -15.26867 -14.95615 -14.60929 -14.54748 -14.50377 -13.84900 -13.58739 -13.47641 -13.37615 -13.19443 -12.77614 -12.40442 -12.35341 -12.14756 -12.12279 -12.11069 -11.81056 -11.63889 -11.58155 -11.36415 -11.34711 -11.16579 -10.81345 -10.71764 -10.53775 -10.07729 -8.17791 -6.30170 1.40704 1.44959 1.52793 1.67756 2.22362 2.42800 3.14553 3.33824 3.53743 3.64399 3.78904 3.89918 4.08545 4.16349 4.24601 4.39164 4.42455 4.50164 4.57985 4.66647 4.70368 4.74050 4.81494 4.86351 4.88457 4.91394 4.98384 5.08128 5.20706 5.23546 5.29292 5.34505 5.35831 5.40241 5.50770 5.58498 5.79058 5.88833 6.25938 6.58887 6.88137 6.91982 7.30733 7.39276 8.94196 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.065342 B = 0.002209 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.408994 B =12672.901739 C =12935.647776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.009 4.009 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.018 3.982 10 C -0.096 4.096 11 C -0.097 4.097 12 C -0.128 4.128 13 C 0.509 3.491 14 O -0.591 6.591 15 N -0.716 5.716 16 C 0.126 3.874 17 C -0.092 4.092 18 H 0.090 0.910 19 C -0.118 4.118 20 C -0.151 4.151 21 C 0.097 3.903 22 H 0.066 0.934 23 O -0.587 6.587 24 C -0.117 4.117 25 H 0.263 0.737 26 H -0.016 1.016 27 H -0.016 1.016 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.417 0.583 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.393 0.607 42 H 0.070 0.930 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.399 -29.239 -2.887 31.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.085 0.915 9 C -0.019 4.019 10 C -0.133 4.133 11 C -0.135 4.135 12 C -0.168 4.168 13 C 0.297 3.703 14 O -0.472 6.472 15 N -0.369 5.369 16 C 0.003 3.997 17 C -0.110 4.110 18 H 0.109 0.891 19 C -0.156 4.156 20 C -0.189 4.189 21 C 0.038 3.962 22 H 0.084 0.916 23 O -0.395 6.395 24 C -0.155 4.155 25 H 0.071 0.929 26 H 0.003 0.997 27 H 0.002 0.998 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.254 0.746 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.243 0.757 42 H 0.089 0.911 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.090 -28.844 -2.415 30.997 hybrid contribution 0.237 0.698 -0.371 0.825 sum 11.327 -28.146 -2.786 30.468 Atomic orbital electron populations 1.70129 1.08072 1.27805 1.51814 1.26119 0.95819 1.03810 0.94817 0.85418 0.78143 0.77621 0.79348 1.18876 1.21109 1.18905 1.21730 0.93757 0.92204 1.50317 0.91519 1.19065 0.94728 0.93865 0.94283 1.21450 0.97798 0.92708 1.01350 1.21249 0.97544 0.93753 1.00941 1.21674 0.98894 0.89458 1.06730 1.21217 0.87747 0.86838 0.74484 1.90697 1.16623 1.88456 1.51404 1.45878 1.11133 1.04814 1.75088 1.21383 0.94679 0.82373 1.01308 1.22124 0.96723 0.92467 0.99733 0.89130 1.22547 1.00267 0.96687 0.96080 1.23070 0.98454 0.95416 1.01963 1.22558 0.94631 0.86471 0.92516 0.91589 1.86513 1.74816 1.37005 1.41201 1.22157 0.99146 0.93181 1.00989 0.92870 0.99727 0.99789 0.92054 0.91984 0.94022 0.93927 0.86213 0.86369 0.74554 0.92941 0.92406 0.91243 0.89822 0.90054 0.90366 0.75694 0.91112 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.47 13.29 21.45 0.28 -59.19 16 2 C -0.01 -0.51 5.46 84.65 0.46 -0.04 16 3 Si 0.97 45.00 29.54 68.60 2.03 47.03 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.54 -31.66 9.11 25.60 0.23 -31.42 16 8 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 9 C 0.02 0.98 4.97 29.85 0.15 1.13 16 10 C -0.10 -3.93 5.15 30.60 0.16 -3.77 16 11 C -0.10 -3.53 4.50 30.60 0.14 -3.40 16 12 C -0.13 -3.13 5.70 29.85 0.17 -2.96 16 13 C 0.51 13.76 7.83 87.66 0.69 14.45 16 14 O -0.59 -22.45 15.98 -3.03 -0.05 -22.50 16 15 N -0.72 -12.78 5.42 -463.06 -2.51 -15.29 16 16 C 0.13 2.21 4.96 86.38 0.43 2.64 16 17 C -0.09 -1.06 2.90 -9.72 -0.03 -1.09 16 18 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 19 C -0.12 -1.07 6.10 31.89 0.19 -0.88 16 20 C -0.15 -1.19 6.55 31.67 0.21 -0.98 16 21 C 0.10 1.02 4.27 31.39 0.13 1.16 16 22 H 0.07 0.60 8.14 -2.39 -0.02 0.59 16 23 O -0.59 -7.15 13.22 -148.98 -1.97 -9.12 16 24 C -0.12 -1.49 6.20 31.39 0.19 -1.30 16 25 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 26 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 27 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 28 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 31 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 32 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.42 4.46 8.38 -92.71 -0.78 3.68 16 35 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.06 1.15 8.06 -2.39 -0.02 1.13 16 37 H 0.07 0.72 7.99 -2.39 -0.02 0.70 16 38 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.08 0.47 8.14 -2.38 -0.02 0.45 16 40 H 0.08 0.63 8.08 -2.39 -0.02 0.61 16 41 H 0.39 1.48 9.10 -74.06 -0.67 0.80 16 42 H 0.07 1.06 7.96 -2.38 -0.02 1.04 16 43 H 0.08 0.98 7.84 -2.39 -0.02 0.96 16 Total: -1.00 -78.55 351.70 0.44 -78.12 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -0.47 Total: 7.42 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 3.13 Total: -26.47 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -2.22 Total: -74.48 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -2.02 Total: -31.62 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -78.55 0.44 -78.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588710501.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.866 kcal (2) G-P(sol) polarization free energy of solvation -78.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds