Wall clock time and date at job start Mon Mar 30 2020 01:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47107 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99989 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46946 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99926 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99691 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99500 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.46756 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.47328 * 299.99455 * 15 14 13 17 17 O 1.42903 * 109.46726 * 60.00051 * 16 15 14 18 18 C 1.53002 * 109.47346 * 59.99855 * 15 14 13 19 19 C 1.53006 * 109.46977 * 180.02562 * 18 15 14 20 20 C 1.52997 * 109.47127 * 299.99541 * 19 18 15 21 21 C 1.53002 * 109.46817 * 60.00361 * 20 19 18 22 22 C 1.52996 * 109.46972 * 299.99733 * 21 20 19 23 23 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46980 * 60.00267 * 9 7 2 25 25 H 1.08996 * 109.46805 * 300.00247 * 9 7 2 26 26 H 1.09001 * 109.47367 * 59.99571 * 10 9 7 27 27 H 1.09004 * 109.47108 * 299.99872 * 10 9 7 28 28 H 0.96998 * 120.00249 * 359.97438 * 13 11 10 29 29 H 1.08992 * 109.47239 * 59.99505 * 14 13 11 30 30 H 1.09004 * 109.46958 * 299.99539 * 14 13 11 31 31 H 1.09002 * 109.47398 * 180.02562 * 16 15 14 32 32 H 1.09001 * 109.47194 * 300.00476 * 16 15 14 33 33 H 0.96700 * 113.99509 * 180.02562 * 17 16 15 34 34 H 1.09000 * 109.46986 * 299.99746 * 18 15 14 35 35 H 1.08993 * 109.47662 * 59.99968 * 18 15 14 36 36 H 1.08998 * 109.46505 * 179.97438 * 19 18 15 37 37 H 1.09001 * 109.46801 * 59.99813 * 19 18 15 38 38 H 1.08996 * 109.46952 * 300.00302 * 20 19 18 39 39 H 1.09002 * 109.47153 * 180.02562 * 20 19 18 40 40 H 1.09000 * 109.46986 * 179.97438 * 21 20 19 41 41 H 1.08996 * 109.47407 * 60.00219 * 21 20 19 42 42 H 1.09000 * 109.47380 * 299.99696 * 22 21 20 43 43 H 1.09001 * 109.46993 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4919 -4.9671 0.0001 12 8 0.2791 -4.9672 0.0010 13 7 2.1659 -6.1343 0.0007 14 6 1.4334 -7.4031 0.0008 15 6 2.4277 -8.5659 0.0009 16 6 3.3073 -8.4850 -1.2483 17 8 4.0217 -7.2474 -1.2485 18 6 3.3073 -8.4847 1.2502 19 6 4.3020 -9.6473 1.2499 20 6 3.5376 -10.9726 1.2497 21 6 2.6580 -11.0538 0.0005 22 6 1.6633 -9.8913 0.0008 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5570 0.8896 26 1 2.8721 -3.6042 0.8894 27 1 2.8720 -3.6042 -0.8906 28 1 3.1359 -6.1343 0.0004 29 1 0.8071 -7.4610 -0.8893 30 1 0.8064 -7.4606 0.8906 31 1 4.0154 -9.3137 -1.2485 32 1 2.6806 -8.5428 -2.1383 33 1 4.6006 -7.1275 -2.0137 34 1 3.8523 -7.5408 1.2501 35 1 2.6808 -8.5424 2.1402 36 1 4.9289 -9.5892 2.1396 37 1 4.9286 -9.5891 0.3599 38 1 2.9110 -11.0307 2.1397 39 1 4.2462 -11.8008 1.2500 40 1 2.1137 -11.9982 0.0001 41 1 3.2845 -10.9957 -0.8895 42 1 1.0366 -9.9495 0.8907 43 1 1.0363 -9.9494 -0.8890 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589708302.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:30 Heat of formation + Delta-G solvation = -120.060389 kcal Electronic energy + Delta-G solvation = -21337.737857 eV Core-core repulsion = 18188.516489 eV Total energy + Delta-G solvation = -3149.221367 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.34706 -38.50715 -36.33153 -34.31495 -33.32415 -31.75683 -31.01122 -30.60458 -26.50782 -26.12213 -24.80216 -22.97563 -21.69175 -20.91968 -19.51072 -18.68259 -17.58284 -16.70534 -16.12002 -15.43452 -15.34920 -15.04659 -14.65728 -14.41798 -14.37135 -14.21981 -13.81861 -13.12824 -12.91806 -12.55853 -12.39368 -12.35782 -12.06736 -12.02330 -11.69351 -11.38652 -11.25434 -11.03910 -10.84700 -10.56815 -10.56048 -10.35132 -10.27822 -9.92798 -9.82993 -9.54110 -9.05917 -8.82526 -8.43448 -8.23593 -5.88676 -3.92643 3.39011 3.43131 3.45150 3.50073 3.67580 4.03293 4.40121 4.47614 4.54365 4.58695 4.79920 4.96115 4.99791 5.04896 5.15546 5.25200 5.30639 5.38232 5.39919 5.45775 5.60900 5.69210 5.75101 5.77033 5.86432 5.88507 5.94941 6.05296 6.07622 6.20487 6.22018 6.39547 6.42759 7.03344 7.11154 7.45321 7.82953 7.97988 8.16974 8.31798 8.48701 9.05460 9.17927 9.70186 11.22358 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.040578 B = 0.003423 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.864014 B = 8177.725622 C = 8425.980854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.128 4.128 11 C 0.505 3.495 12 O -0.547 6.547 13 N -0.728 5.728 14 C 0.134 3.866 15 C -0.067 4.067 16 C 0.085 3.915 17 O -0.567 6.567 18 C -0.106 4.106 19 C -0.120 4.120 20 C -0.121 4.121 21 C -0.121 4.121 22 C -0.107 4.107 23 H 0.261 0.739 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.408 0.592 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.045 0.955 33 H 0.380 0.620 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.144 -24.601 -0.835 26.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.564 4.564 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.168 4.168 11 C 0.293 3.707 12 O -0.424 6.424 13 N -0.388 5.388 14 C 0.009 3.991 15 C -0.067 4.067 16 C 0.007 3.993 17 O -0.373 6.373 18 C -0.144 4.144 19 C -0.158 4.158 20 C -0.158 4.158 21 C -0.158 4.158 22 C -0.145 4.145 23 H 0.070 0.930 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.249 0.751 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.228 0.772 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.799 -24.397 -0.280 25.937 hybrid contribution 1.148 0.762 -0.580 1.495 sum 9.947 -23.636 -0.860 25.658 Atomic orbital electron populations 1.69992 1.06041 1.26574 1.50363 1.25028 0.94819 0.99163 0.95433 0.86659 0.79531 0.83250 0.78506 1.20288 1.21338 1.20281 1.21224 0.92895 0.91121 1.51148 0.92697 1.18880 0.93217 0.89410 0.98497 1.21804 1.00551 0.92210 1.02222 1.21507 0.88533 0.85971 0.74677 1.90640 1.14655 1.87931 1.49158 1.46407 1.11183 1.04560 1.76659 1.21146 0.93517 0.82915 1.01544 1.20854 0.95335 0.95217 0.95330 1.22324 0.94094 0.85916 0.96937 1.86198 1.62401 1.38913 1.49825 1.21528 0.97370 0.98971 0.96505 1.21573 0.97876 0.94398 1.01904 1.21560 0.98627 0.97430 0.98225 1.21579 0.97789 0.98063 0.98394 1.21499 0.97574 0.92537 1.02911 0.92974 0.95929 0.95923 0.90614 0.90483 0.75078 0.92396 0.92168 0.92975 0.93722 0.77152 0.90849 0.91800 0.92034 0.91845 0.91925 0.92251 0.91849 0.91890 0.90896 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.20 13.29 55.43 0.74 -27.46 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.53 -15.45 9.11 -34.44 -0.31 -15.77 16 8 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.04 1.06 4.26 -27.88 -0.12 0.94 16 10 C -0.13 -2.81 5.64 -27.88 -0.16 -2.97 16 11 C 0.50 10.65 7.83 -10.98 -0.09 10.56 16 12 O -0.55 -13.87 15.98 5.56 0.09 -13.78 16 13 N -0.73 -11.59 4.62 -60.29 -0.28 -11.87 16 14 C 0.13 1.83 4.57 -4.04 -0.02 1.81 16 15 C -0.07 -0.64 0.51 -154.51 -0.08 -0.72 16 16 C 0.08 0.72 5.22 37.16 0.19 0.91 16 17 O -0.57 -5.15 9.71 -35.23 -0.34 -5.50 16 18 C -0.11 -1.01 4.42 -26.73 -0.12 -1.13 16 19 C -0.12 -0.91 5.65 -26.73 -0.15 -1.06 16 20 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 21 C -0.12 -0.78 5.65 -26.73 -0.15 -0.94 16 22 C -0.11 -0.85 4.73 -26.73 -0.13 -0.98 16 23 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 24 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 25 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 27 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 28 H 0.41 5.75 4.70 -40.82 -0.19 5.55 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.36 4.80 -51.93 -0.25 0.11 16 32 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.38 2.02 9.12 45.56 0.42 2.44 16 34 H 0.07 0.80 6.50 -51.93 -0.34 0.46 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.38 6.43 -51.93 -0.33 0.05 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 331.34 15.07 4.99 4.99 Total: -1.00 -35.45 331.34 -7.69 -43.14 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.49 Total: 2.01 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -1.38 Total: -8.69 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.46 Total: -39.33 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.25 Total: -19.28 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.45 -7.69 -43.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589708302.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.919 kcal (2) G-P(sol) polarization free energy of solvation -35.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds