Wall clock time and date at job start Mon Mar 30 2020 01:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47107 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99989 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46946 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99926 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99691 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99500 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.46756 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.47328 * 299.99455 * 15 14 13 17 17 O 1.42903 * 109.46726 * 60.00051 * 16 15 14 18 18 C 1.53002 * 109.47346 * 59.99855 * 15 14 13 19 19 C 1.53006 * 109.46977 * 180.02562 * 18 15 14 20 20 C 1.52997 * 109.47127 * 299.99541 * 19 18 15 21 21 C 1.53002 * 109.46817 * 60.00361 * 20 19 18 22 22 C 1.52996 * 109.46972 * 299.99733 * 21 20 19 23 23 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46980 * 60.00267 * 9 7 2 25 25 H 1.08996 * 109.46805 * 300.00247 * 9 7 2 26 26 H 1.09001 * 109.47367 * 59.99571 * 10 9 7 27 27 H 1.09004 * 109.47108 * 299.99872 * 10 9 7 28 28 H 0.96998 * 120.00249 * 359.97438 * 13 11 10 29 29 H 1.08992 * 109.47239 * 59.99505 * 14 13 11 30 30 H 1.09004 * 109.46958 * 299.99539 * 14 13 11 31 31 H 1.09002 * 109.47398 * 180.02562 * 16 15 14 32 32 H 1.09001 * 109.47194 * 300.00476 * 16 15 14 33 33 H 0.96700 * 113.99509 * 180.02562 * 17 16 15 34 34 H 1.09000 * 109.46986 * 299.99746 * 18 15 14 35 35 H 1.08993 * 109.47662 * 59.99968 * 18 15 14 36 36 H 1.08998 * 109.46505 * 179.97438 * 19 18 15 37 37 H 1.09001 * 109.46801 * 59.99813 * 19 18 15 38 38 H 1.08996 * 109.46952 * 300.00302 * 20 19 18 39 39 H 1.09002 * 109.47153 * 180.02562 * 20 19 18 40 40 H 1.09000 * 109.46986 * 179.97438 * 21 20 19 41 41 H 1.08996 * 109.47407 * 60.00219 * 21 20 19 42 42 H 1.09000 * 109.47380 * 299.99696 * 22 21 20 43 43 H 1.09001 * 109.46993 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4919 -4.9671 0.0001 12 8 0.2791 -4.9672 0.0010 13 7 2.1659 -6.1343 0.0007 14 6 1.4334 -7.4031 0.0008 15 6 2.4277 -8.5659 0.0009 16 6 3.3073 -8.4850 -1.2483 17 8 4.0217 -7.2474 -1.2485 18 6 3.3073 -8.4847 1.2502 19 6 4.3020 -9.6473 1.2499 20 6 3.5376 -10.9726 1.2497 21 6 2.6580 -11.0538 0.0005 22 6 1.6633 -9.8913 0.0008 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5570 0.8896 26 1 2.8721 -3.6042 0.8894 27 1 2.8720 -3.6042 -0.8906 28 1 3.1359 -6.1343 0.0004 29 1 0.8071 -7.4610 -0.8893 30 1 0.8064 -7.4606 0.8906 31 1 4.0154 -9.3137 -1.2485 32 1 2.6806 -8.5428 -2.1383 33 1 4.6006 -7.1275 -2.0137 34 1 3.8523 -7.5408 1.2501 35 1 2.6808 -8.5424 2.1402 36 1 4.9289 -9.5892 2.1396 37 1 4.9286 -9.5891 0.3599 38 1 2.9110 -11.0307 2.1397 39 1 4.2462 -11.8008 1.2500 40 1 2.1137 -11.9982 0.0001 41 1 3.2845 -10.9957 -0.8895 42 1 1.0366 -9.9495 0.8907 43 1 1.0363 -9.9494 -0.8890 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589708302.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:30 Heat of formation + Delta-G solvation = -145.632985 kcal Electronic energy + Delta-G solvation = -21338.846768 eV Core-core repulsion = 18188.516489 eV Total energy + Delta-G solvation = -3150.330278 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.29611 -40.01032 -37.00208 -35.70564 -35.40567 -33.18129 -32.34566 -31.58653 -28.20631 -26.80883 -26.36398 -23.80690 -23.29168 -21.89524 -21.09319 -19.44978 -18.84174 -18.23180 -17.39880 -16.97285 -16.72356 -16.38593 -16.11682 -15.73015 -15.28991 -14.98436 -14.63483 -14.56338 -14.27031 -14.15860 -13.59785 -13.33964 -13.22342 -13.02228 -12.97269 -12.77158 -12.67651 -12.49141 -12.00519 -11.91586 -11.89867 -11.62835 -11.31491 -11.23756 -11.07618 -10.94971 -10.65859 -10.55871 -10.54103 -9.88773 -8.17085 -6.31750 1.41930 1.47302 1.55009 1.79161 2.35009 2.48377 3.15196 3.26670 3.62681 3.77574 3.90964 4.10280 4.22218 4.31367 4.35002 4.38393 4.52486 4.53985 4.56754 4.60741 4.62972 4.68358 4.74543 4.82195 4.86684 5.05162 5.11082 5.18253 5.20406 5.27232 5.31611 5.40695 5.48446 5.49682 5.59814 5.63776 5.68575 5.86170 6.18724 6.76784 6.86392 7.03157 7.38208 7.50904 8.95634 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.040578 B = 0.003423 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.864014 B = 8177.725622 C = 8425.980854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.977 3.023 4 H -0.261 1.261 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.075 0.925 9 C 0.044 3.956 10 C -0.117 4.117 11 C 0.503 3.497 12 O -0.600 6.600 13 N -0.701 5.701 14 C 0.129 3.871 15 C -0.060 4.060 16 C 0.086 3.914 17 O -0.586 6.586 18 C -0.106 4.106 19 C -0.115 4.115 20 C -0.120 4.120 21 C -0.116 4.116 22 C -0.107 4.107 23 H 0.263 0.737 24 H -0.019 1.019 25 H -0.020 1.020 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.420 0.580 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.398 0.602 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.156 -25.625 -1.235 28.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.094 0.906 9 C 0.006 3.994 10 C -0.157 4.157 11 C 0.291 3.709 12 O -0.482 6.482 13 N -0.359 5.359 14 C 0.005 3.995 15 C -0.060 4.060 16 C 0.009 3.991 17 O -0.396 6.396 18 C -0.144 4.144 19 C -0.152 4.152 20 C -0.158 4.158 21 C -0.153 4.153 22 C -0.145 4.145 23 H 0.072 0.928 24 H 0.000 1.000 25 H -0.001 1.001 26 H 0.116 0.884 27 H 0.119 0.881 28 H 0.264 0.736 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.249 0.751 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.886 -25.474 -0.690 28.119 hybrid contribution 0.181 1.020 -0.449 1.129 sum 12.067 -24.454 -1.140 27.292 Atomic orbital electron populations 1.70180 1.08375 1.27906 1.51396 1.26179 0.95762 1.04051 0.94549 0.85332 0.78022 0.77101 0.79522 1.18571 1.21229 1.18666 1.21695 0.93984 0.91625 1.50982 0.90639 1.18668 0.93654 0.92500 0.94539 1.21585 0.99237 0.90464 1.04381 1.21364 0.87755 0.87171 0.74627 1.90622 1.16797 1.88654 1.52100 1.46206 1.11763 1.03969 1.74010 1.21346 0.94531 0.83279 1.00379 1.20831 0.94671 0.94059 0.96436 1.22338 0.94374 0.86536 0.95874 1.86092 1.62951 1.39328 1.51207 1.21510 0.97547 0.99400 0.95930 1.21538 0.97383 0.93860 1.02435 1.21566 0.98781 0.97277 0.98145 1.21565 0.97468 0.97589 0.98702 1.21510 0.97913 0.92198 1.02860 0.92824 1.00049 1.00128 0.88391 0.88099 0.73559 0.93426 0.93575 0.90565 0.93750 0.75055 0.92207 0.92821 0.91784 0.91044 0.92410 0.90849 0.90741 0.90863 0.91480 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.20 13.29 21.45 0.28 -60.91 16 2 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 3 Si 0.98 45.33 29.54 68.60 2.03 47.35 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 6 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.55 -32.27 9.11 25.60 0.23 -32.03 16 8 H 0.08 4.06 7.74 -2.91 -0.02 4.04 16 9 C 0.04 2.59 4.26 29.85 0.13 2.72 16 10 C -0.12 -5.15 5.64 29.85 0.17 -4.98 16 11 C 0.50 21.70 7.83 87.66 0.69 22.38 16 12 O -0.60 -32.07 15.98 -3.03 -0.05 -32.12 16 13 N -0.70 -22.18 4.62 -463.06 -2.14 -24.32 16 14 C 0.13 3.57 4.57 86.38 0.39 3.96 16 15 C -0.06 -1.07 0.51 -52.18 -0.03 -1.10 16 16 C 0.09 1.25 5.22 71.98 0.38 1.63 16 17 O -0.59 -9.28 9.71 -148.98 -1.45 -10.73 16 18 C -0.11 -1.88 4.42 30.60 0.14 -1.75 16 19 C -0.11 -1.46 5.65 30.60 0.17 -1.29 16 20 C -0.12 -1.28 5.92 30.59 0.18 -1.10 16 21 C -0.12 -1.18 5.65 30.59 0.17 -1.00 16 22 C -0.11 -1.53 4.73 30.59 0.14 -1.39 16 23 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 24 H -0.02 -1.25 8.10 -2.39 -0.02 -1.27 16 25 H -0.02 -1.31 8.10 -2.39 -0.02 -1.33 16 26 H 0.10 3.87 8.14 -2.39 -0.02 3.85 16 27 H 0.10 3.95 8.14 -2.38 -0.02 3.93 16 28 H 0.42 11.30 4.70 -92.71 -0.44 10.86 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 1.41 8.14 -2.38 -0.02 1.40 16 31 H 0.08 0.77 4.80 -2.39 -0.01 0.76 16 32 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.40 3.15 9.12 -74.06 -0.68 2.47 16 34 H 0.06 1.22 6.50 -2.39 -0.02 1.20 16 35 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 0.81 6.43 -2.39 -0.02 0.80 16 38 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.07 0.62 6.43 -2.39 -0.02 0.60 16 42 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -80.06 331.34 1.79 -78.26 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -0.11 Total: 16.44 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 3.23 Total: -13.97 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -1.85 Total: -85.23 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -1.49 Total: -42.85 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -80.06 1.79 -78.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589708302.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.369 kcal (2) G-P(sol) polarization free energy of solvation -80.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds