Wall clock time and date at job start Mon Mar 30 2020 01:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99934 * 2 1 4 4 H 1.48502 * 109.46886 * 269.99640 * 3 2 1 5 5 H 1.48494 * 109.47331 * 29.99702 * 3 2 1 6 6 H 1.48500 * 109.47019 * 149.99811 * 3 2 1 7 7 C 1.37877 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99906 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00253 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47467 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47449 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47401 * 180.02562 * 11 10 9 13 13 C 1.50688 * 109.47258 * 179.97438 * 12 11 10 14 14 O 1.21286 * 120.00264 * 0.86311 * 13 12 11 15 15 N 1.34778 * 120.00155 * 180.86127 * 13 12 11 16 16 C 1.46498 * 120.00065 * 5.95368 * 15 13 12 17 17 C 1.53003 * 109.46912 * 270.00170 * 16 15 13 18 18 C 1.53001 * 109.46851 * 179.97438 * 17 16 15 19 19 O 1.42904 * 109.47213 * 180.02562 * 18 17 16 20 20 C 1.46501 * 119.99969 * 185.95622 * 15 13 12 21 21 C 1.53000 * 117.50379 * 16.36428 * 20 15 13 22 22 C 1.52997 * 117.49833 * 307.70308 * 20 15 13 23 23 H 0.96995 * 119.99935 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46973 * 60.00399 * 9 7 2 25 25 H 1.08998 * 109.47477 * 300.00816 * 9 7 2 26 26 H 1.09002 * 109.46837 * 60.00145 * 10 9 7 27 27 H 1.09006 * 109.47352 * 300.00398 * 10 9 7 28 28 H 1.09002 * 109.47201 * 60.00101 * 11 10 9 29 29 H 1.09001 * 109.46772 * 299.99936 * 11 10 9 30 30 H 1.09002 * 109.47014 * 59.99798 * 12 11 10 31 31 H 1.08997 * 109.46451 * 300.00185 * 12 11 10 32 32 H 1.09008 * 109.47061 * 29.99720 * 16 15 13 33 33 H 1.08996 * 109.47164 * 150.00025 * 16 15 13 34 34 H 1.08992 * 109.47158 * 299.99489 * 17 16 15 35 35 H 1.09006 * 109.47380 * 60.00131 * 17 16 15 36 36 H 1.08995 * 109.47804 * 299.99980 * 18 17 16 37 37 H 1.09009 * 109.47035 * 60.00222 * 18 17 16 38 38 H 0.96697 * 114.00015 * 180.02562 * 19 18 17 39 39 H 1.09006 * 115.54719 * 162.03623 * 20 15 13 40 40 H 1.08998 * 117.49172 * 0.02562 * 21 20 15 41 41 H 1.08994 * 117.49797 * 145.01829 * 21 20 15 42 42 H 1.09008 * 117.49966 * 214.98084 * 22 20 15 43 43 H 1.09002 * 117.50103 * 359.97438 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5515 -2.6365 0.0001 12 6 6.0616 -4.0791 -0.0004 13 6 7.5684 -4.0791 -0.0010 14 8 8.1749 -3.0289 0.0148 15 7 8.2423 -5.2461 -0.0190 16 6 7.5158 -6.5093 -0.1696 17 6 7.1338 -7.0457 1.2114 18 6 6.3744 -8.3646 1.0541 19 8 6.0171 -8.8653 2.3440 20 6 9.7015 -5.2515 0.1120 21 6 10.3679 -3.9806 0.6425 22 6 10.4992 -4.3540 -0.8361 23 1 -0.4850 0.8400 -0.0004 24 1 3.8751 -0.6797 0.8895 25 1 3.8745 -0.6807 -0.8904 26 1 3.6578 -3.1505 -0.8897 27 1 3.6585 -3.1502 0.8903 28 1 5.9148 -2.1227 0.8901 29 1 5.9148 -2.1228 -0.8899 30 1 5.6982 -4.5926 -0.8906 31 1 5.6981 -4.5931 0.8894 32 1 6.6127 -6.3413 -0.7567 33 1 8.1502 -7.2349 -0.6785 34 1 8.0367 -7.2137 1.7984 35 1 6.4993 -6.3200 1.7204 36 1 5.4715 -8.1963 0.4673 37 1 7.0086 -9.0905 0.5450 38 1 5.5321 -9.7016 2.3207 39 1 10.1447 -6.2070 0.3927 40 1 9.7206 -3.1406 0.8945 41 1 11.2498 -4.0999 1.2719 42 1 11.4675 -4.7188 -1.1790 43 1 9.9384 -3.7598 -1.5577 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589844015.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:23 Heat of formation + Delta-G solvation = -73.457752 kcal Electronic energy + Delta-G solvation = -20624.836457 eV Core-core repulsion = 17477.635932 eV Total energy + Delta-G solvation = -3147.200525 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.56856 -37.54613 -36.75748 -35.43315 -34.74904 -32.50015 -31.44559 -30.02786 -26.23993 -25.60290 -23.34689 -22.51697 -21.99861 -21.38149 -20.01938 -19.00959 -17.80900 -17.03525 -16.71915 -16.40286 -15.81129 -15.55692 -14.72479 -14.42114 -14.33458 -14.12868 -13.66781 -13.44685 -13.07482 -12.97138 -12.61634 -12.42780 -12.05737 -11.76237 -11.60223 -11.46632 -11.40789 -11.21371 -11.00980 -10.71718 -10.51772 -10.49243 -10.31341 -9.85735 -9.66211 -9.60761 -9.29711 -9.10723 -8.59533 -8.48286 -5.99522 -3.96923 2.52118 2.65752 3.36233 3.43266 3.49472 3.75675 3.87743 4.35699 4.51166 4.51950 4.70800 4.77206 4.86677 4.89440 4.95373 5.00500 5.10511 5.17382 5.22464 5.33346 5.36080 5.39561 5.60562 5.66186 5.68594 5.89543 5.94627 6.03727 6.14847 6.21586 6.42372 6.58455 6.69004 6.82331 6.99883 7.20321 7.28325 7.39275 7.52122 7.85938 8.14568 8.59466 9.05467 9.63966 11.14031 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016970 B = 0.003870 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.531280 B = 7233.514286 C = 8643.277986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.102 4.102 11 C -0.106 4.106 12 C -0.140 4.140 13 C 0.515 3.485 14 O -0.526 6.526 15 N -0.592 5.592 16 C 0.116 3.884 17 C -0.143 4.143 18 C 0.078 3.922 19 O -0.574 6.574 20 C 0.068 3.932 21 C -0.192 4.192 22 C -0.187 4.187 23 H 0.262 0.738 24 H 0.016 0.984 25 H 0.011 0.989 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.046 0.954 38 H 0.381 0.619 39 H 0.125 0.875 40 H 0.137 0.863 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.240 -18.831 -0.273 26.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.144 4.144 12 C -0.180 4.180 13 C 0.306 3.694 14 O -0.402 6.402 15 N -0.323 5.323 16 C -0.007 4.007 17 C -0.182 4.182 18 C -0.001 4.001 19 O -0.379 6.379 20 C -0.036 4.036 21 C -0.229 4.229 22 C -0.225 4.225 23 H 0.072 0.928 24 H 0.034 0.966 25 H 0.029 0.971 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.228 0.772 39 H 0.142 0.858 40 H 0.155 0.845 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 19.700 -17.601 -0.080 26.418 hybrid contribution 0.078 0.177 -0.243 0.311 sum 19.778 -17.424 -0.323 26.360 Atomic orbital electron populations 1.69919 1.06309 1.26818 1.51513 1.25037 0.94724 0.99207 0.94606 0.86778 0.80450 0.83570 0.78531 1.20321 1.21445 1.18901 1.21183 0.89670 0.94377 1.50487 0.91121 1.19572 0.96904 0.92479 0.96303 1.21474 0.91679 0.99938 1.00902 1.21491 0.97239 0.92775 1.02877 1.21886 0.90300 1.01746 1.04038 1.21130 0.90864 0.82611 0.74831 1.90544 1.69674 1.31441 1.48562 1.47398 1.05345 1.06478 1.73122 1.21457 0.97520 0.85335 0.96399 1.22007 1.01421 0.96604 0.98150 1.22068 0.98106 0.94985 0.84895 1.86489 1.78690 1.43521 1.29247 1.21643 0.79585 0.96474 1.05926 1.23827 1.02341 1.00414 0.96317 1.23246 1.01059 1.03897 0.94336 0.92823 0.96614 0.97082 0.92909 0.92841 0.91752 0.91832 0.89111 0.88882 0.89466 0.89991 0.90827 0.90377 0.93093 0.93610 0.77198 0.85760 0.84506 0.89440 0.88883 0.88475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.51 13.96 55.43 0.77 -27.74 16 2 C 0.06 1.94 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 22.49 27.47 -169.99 -4.67 17.82 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 7 C -0.52 -15.18 9.66 -34.44 -0.33 -15.52 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C -0.02 -0.38 4.04 -27.89 -0.11 -0.49 16 10 C -0.10 -2.03 5.15 -26.73 -0.14 -2.17 16 11 C -0.11 -1.79 4.50 -26.73 -0.12 -1.91 16 12 C -0.14 -1.81 4.42 -27.89 -0.12 -1.94 16 13 C 0.52 6.99 7.46 -10.99 -0.08 6.91 16 14 O -0.53 -8.80 11.73 5.55 0.07 -8.74 16 15 N -0.59 -6.19 2.84 -166.11 -0.47 -6.67 16 16 C 0.12 0.84 5.21 -4.04 -0.02 0.82 16 17 C -0.14 -1.12 5.91 -26.73 -0.16 -1.28 16 18 C 0.08 0.51 7.05 37.16 0.26 0.77 16 19 O -0.57 -4.75 13.66 -35.23 -0.48 -5.23 16 20 C 0.07 0.67 6.60 -67.93 -0.45 0.22 16 21 C -0.19 -2.17 9.63 -26.69 -0.26 -2.43 16 22 C -0.19 -1.95 9.88 -26.70 -0.26 -2.22 16 23 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 24 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 25 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.06 1.15 8.09 -51.93 -0.42 0.73 16 29 H 0.06 1.12 8.11 -51.93 -0.42 0.70 16 30 H 0.09 1.00 7.18 -51.93 -0.37 0.63 16 31 H 0.09 1.10 6.92 -51.93 -0.36 0.74 16 32 H 0.09 0.57 6.46 -51.92 -0.34 0.24 16 33 H 0.08 0.43 8.07 -51.93 -0.42 0.02 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.75 6.93 -51.93 -0.36 0.39 16 36 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.05 0.22 8.14 -51.92 -0.42 -0.20 16 38 H 0.38 1.41 9.12 45.56 0.42 1.83 16 39 H 0.12 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.14 1.99 5.22 -52.12 -0.27 1.72 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 43 H 0.10 1.23 7.60 -51.93 -0.39 0.84 16 LS Contribution 345.31 15.07 5.20 5.20 Total: -1.00 -35.01 345.31 -8.15 -43.16 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -6.67 Total: -0.43 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -1.89 Total: -17.37 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: 0.30 Total: -34.41 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.42 Total: -13.97 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.67 Total: 17.82 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.01 -8.15 -43.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589844015.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.300 kcal (2) G-P(sol) polarization free energy of solvation -35.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds