Wall clock time and date at job start Mon Mar 30 2020 01:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99934 * 2 1 4 4 H 1.48502 * 109.46886 * 269.99640 * 3 2 1 5 5 H 1.48494 * 109.47331 * 29.99702 * 3 2 1 6 6 H 1.48500 * 109.47019 * 149.99811 * 3 2 1 7 7 C 1.37877 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99906 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00253 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47467 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47449 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47401 * 180.02562 * 11 10 9 13 13 C 1.50688 * 109.47258 * 179.97438 * 12 11 10 14 14 O 1.21286 * 120.00264 * 0.86311 * 13 12 11 15 15 N 1.34778 * 120.00155 * 180.86127 * 13 12 11 16 16 C 1.46498 * 120.00065 * 5.95368 * 15 13 12 17 17 C 1.53003 * 109.46912 * 270.00170 * 16 15 13 18 18 C 1.53001 * 109.46851 * 179.97438 * 17 16 15 19 19 O 1.42904 * 109.47213 * 180.02562 * 18 17 16 20 20 C 1.46501 * 119.99969 * 185.95622 * 15 13 12 21 21 C 1.53000 * 117.50379 * 16.36428 * 20 15 13 22 22 C 1.52997 * 117.49833 * 307.70308 * 20 15 13 23 23 H 0.96995 * 119.99935 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46973 * 60.00399 * 9 7 2 25 25 H 1.08998 * 109.47477 * 300.00816 * 9 7 2 26 26 H 1.09002 * 109.46837 * 60.00145 * 10 9 7 27 27 H 1.09006 * 109.47352 * 300.00398 * 10 9 7 28 28 H 1.09002 * 109.47201 * 60.00101 * 11 10 9 29 29 H 1.09001 * 109.46772 * 299.99936 * 11 10 9 30 30 H 1.09002 * 109.47014 * 59.99798 * 12 11 10 31 31 H 1.08997 * 109.46451 * 300.00185 * 12 11 10 32 32 H 1.09008 * 109.47061 * 29.99720 * 16 15 13 33 33 H 1.08996 * 109.47164 * 150.00025 * 16 15 13 34 34 H 1.08992 * 109.47158 * 299.99489 * 17 16 15 35 35 H 1.09006 * 109.47380 * 60.00131 * 17 16 15 36 36 H 1.08995 * 109.47804 * 299.99980 * 18 17 16 37 37 H 1.09009 * 109.47035 * 60.00222 * 18 17 16 38 38 H 0.96697 * 114.00015 * 180.02562 * 19 18 17 39 39 H 1.09006 * 115.54719 * 162.03623 * 20 15 13 40 40 H 1.08998 * 117.49172 * 0.02562 * 21 20 15 41 41 H 1.08994 * 117.49797 * 145.01829 * 21 20 15 42 42 H 1.09008 * 117.49966 * 214.98084 * 22 20 15 43 43 H 1.09002 * 117.50103 * 359.97438 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5515 -2.6365 0.0001 12 6 6.0616 -4.0791 -0.0004 13 6 7.5684 -4.0791 -0.0010 14 8 8.1749 -3.0289 0.0148 15 7 8.2423 -5.2461 -0.0190 16 6 7.5158 -6.5093 -0.1696 17 6 7.1338 -7.0457 1.2114 18 6 6.3744 -8.3646 1.0541 19 8 6.0171 -8.8653 2.3440 20 6 9.7015 -5.2515 0.1120 21 6 10.3679 -3.9806 0.6425 22 6 10.4992 -4.3540 -0.8361 23 1 -0.4850 0.8400 -0.0004 24 1 3.8751 -0.6797 0.8895 25 1 3.8745 -0.6807 -0.8904 26 1 3.6578 -3.1505 -0.8897 27 1 3.6585 -3.1502 0.8903 28 1 5.9148 -2.1227 0.8901 29 1 5.9148 -2.1228 -0.8899 30 1 5.6982 -4.5926 -0.8906 31 1 5.6981 -4.5931 0.8894 32 1 6.6127 -6.3413 -0.7567 33 1 8.1502 -7.2349 -0.6785 34 1 8.0367 -7.2137 1.7984 35 1 6.4993 -6.3200 1.7204 36 1 5.4715 -8.1963 0.4673 37 1 7.0086 -9.0905 0.5450 38 1 5.5321 -9.7016 2.3207 39 1 10.1447 -6.2070 0.3927 40 1 9.7206 -3.1406 0.8945 41 1 11.2498 -4.0999 1.2719 42 1 11.4675 -4.7188 -1.1790 43 1 9.9384 -3.7598 -1.5577 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589844015.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:22 Heat of formation + Delta-G solvation = -97.732430 kcal Electronic energy + Delta-G solvation = -20625.889086 eV Core-core repulsion = 17477.635932 eV Total energy + Delta-G solvation = -3148.253154 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.50732 -38.16263 -37.69307 -36.62057 -35.93456 -34.51643 -32.23080 -31.65669 -27.85362 -26.27324 -24.67494 -23.33194 -22.83154 -22.54422 -21.68316 -19.95952 -18.86521 -18.47275 -17.74885 -17.30832 -16.90117 -16.34373 -16.23176 -15.70694 -15.57220 -15.12252 -14.75682 -14.51323 -14.15012 -14.03257 -13.83866 -13.65488 -13.56038 -13.41819 -12.91481 -12.40881 -12.34871 -12.27827 -11.99317 -11.98150 -11.82828 -11.75604 -11.47113 -11.35679 -11.26877 -11.26275 -10.79921 -10.76759 -10.41389 -9.45126 -8.30423 -6.33495 1.33891 1.35624 1.48408 1.51878 1.85612 2.35226 2.97191 3.05007 3.30729 3.59116 3.88931 3.94208 4.00434 4.07352 4.10373 4.13591 4.27213 4.41319 4.46270 4.53750 4.60162 4.65833 4.69597 4.72669 4.73966 4.82623 4.83220 5.05548 5.10292 5.12943 5.17917 5.22698 5.30124 5.37835 5.57629 5.63589 5.67538 5.75168 6.28568 6.33574 6.74272 6.96305 7.16974 7.31410 8.86242 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016970 B = 0.003870 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.531280 B = 7233.514286 C = 8643.277986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.947 3.053 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.254 1.254 7 C -0.531 4.531 8 H 0.037 0.963 9 C -0.016 4.016 10 C -0.093 4.093 11 C -0.095 4.095 12 C -0.132 4.132 13 C 0.509 3.491 14 O -0.566 6.566 15 N -0.587 5.587 16 C 0.114 3.886 17 C -0.139 4.139 18 C 0.076 3.924 19 O -0.602 6.602 20 C 0.075 3.925 21 C -0.209 4.209 22 C -0.184 4.184 23 H 0.266 0.734 24 H 0.012 0.988 25 H 0.013 0.987 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.398 0.602 39 H 0.160 0.840 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.119 0.881 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.173 -20.430 -0.801 29.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.770 3.230 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.178 1.178 7 C -0.569 4.569 8 H 0.056 0.944 9 C -0.054 4.054 10 C -0.131 4.131 11 C -0.134 4.134 12 C -0.172 4.172 13 C 0.300 3.700 14 O -0.446 6.446 15 N -0.317 5.317 16 C -0.008 4.008 17 C -0.178 4.178 18 C -0.002 4.002 19 O -0.411 6.411 20 C -0.029 4.029 21 C -0.247 4.247 22 C -0.222 4.222 23 H 0.075 0.925 24 H 0.031 0.969 25 H 0.032 0.968 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.134 0.866 31 H 0.125 0.875 32 H 0.116 0.884 33 H 0.130 0.870 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.248 0.752 39 H 0.178 0.822 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.137 0.863 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 21.634 -19.260 -0.612 28.972 hybrid contribution -0.579 0.585 -0.060 0.825 sum 21.056 -18.675 -0.672 28.152 Atomic orbital electron populations 1.70054 1.08103 1.28102 1.52845 1.25974 0.95600 1.03330 0.94242 0.85707 0.79348 0.78688 0.79226 1.19105 1.20657 1.17774 1.21534 0.92064 0.93244 1.50045 0.94449 1.19565 0.93952 0.95790 0.96054 1.21333 0.93659 0.96806 1.01281 1.21272 0.94865 0.95503 1.01719 1.21776 0.90307 0.99177 1.05923 1.21195 0.91029 0.83058 0.74767 1.90562 1.70335 1.33096 1.50573 1.47467 1.05926 1.06689 1.71587 1.21713 0.98354 0.84316 0.96445 1.21940 1.00871 0.96906 0.98071 1.22144 0.98781 0.94741 0.84502 1.86434 1.79236 1.44942 1.30492 1.21978 0.79086 0.97209 1.04599 1.23709 1.02989 1.00473 0.97494 1.23217 1.02084 1.03768 0.93156 0.92481 0.96947 0.96834 0.92270 0.92732 0.93218 0.92774 0.86624 0.87541 0.88428 0.86955 0.91462 0.92712 0.92270 0.91232 0.75185 0.82228 0.88036 0.87563 0.86263 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.83 13.96 21.45 0.30 -60.53 16 2 C 0.01 0.32 5.47 84.66 0.46 0.78 16 3 Si 0.95 46.35 27.47 68.60 1.88 48.24 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.25 -11.90 6.54 99.48 0.65 -11.25 16 7 C -0.53 -31.58 9.66 25.60 0.25 -31.33 16 8 H 0.04 2.40 7.99 -2.91 -0.02 2.37 16 9 C -0.02 -0.80 4.04 29.84 0.12 -0.68 16 10 C -0.09 -3.65 5.15 30.59 0.16 -3.49 16 11 C -0.10 -3.19 4.50 30.60 0.14 -3.05 16 12 C -0.13 -3.24 4.42 29.85 0.13 -3.11 16 13 C 0.51 13.38 7.46 87.65 0.65 14.04 16 14 O -0.57 -19.28 11.73 -3.05 -0.04 -19.32 16 15 N -0.59 -11.03 2.84 -797.83 -2.26 -13.30 16 16 C 0.11 1.26 5.21 86.38 0.45 1.71 16 17 C -0.14 -1.84 5.91 30.60 0.18 -1.66 16 18 C 0.08 0.78 7.05 71.98 0.51 1.29 16 19 O -0.60 -8.83 13.66 -148.98 -2.04 -10.87 16 20 C 0.08 1.29 6.60 44.99 0.30 1.59 16 21 C -0.21 -4.58 9.63 30.62 0.29 -4.28 16 22 C -0.18 -3.56 9.88 30.62 0.30 -3.26 16 23 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 24 H 0.01 0.61 7.20 -2.39 -0.02 0.59 16 25 H 0.01 0.65 7.57 -2.39 -0.02 0.63 16 26 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 28 H 0.05 1.79 8.09 -2.39 -0.02 1.77 16 29 H 0.05 1.90 8.11 -2.39 -0.02 1.88 16 30 H 0.12 2.25 7.18 -2.39 -0.02 2.23 16 31 H 0.11 2.34 6.92 -2.39 -0.02 2.32 16 32 H 0.10 0.92 6.46 -2.38 -0.02 0.91 16 33 H 0.11 0.65 8.07 -2.39 -0.02 0.63 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 35 H 0.05 0.98 6.93 -2.38 -0.02 0.96 16 36 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16 38 H 0.40 2.22 9.12 -74.06 -0.68 1.54 16 39 H 0.16 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.10 3.06 5.22 -5.35 -0.03 3.04 16 41 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.12 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.07 1.75 7.60 -2.39 -0.02 1.74 16 Total: -1.00 -78.00 345.31 2.03 -75.97 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.24 Total: 11.26 kcal Atomic # 6 Polarization: -35.40 SS G_CDS: 3.94 Total: -31.46 kcal Atomic # 7 Polarization: -71.86 SS G_CDS: -1.97 Total: -73.83 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -2.07 Total: -30.19 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.88 Total: 48.24 kcal Total: -78.00 2.03 -75.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589844015.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.758 kcal (2) G-P(sol) polarization free energy of solvation -78.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds