Wall clock time and date at job start Mon Mar 30 2020 01:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00576 * 2 1 4 4 H 1.48499 * 109.46939 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47470 * 119.99506 * 3 2 1 6 6 H 1.48499 * 109.47276 * 240.00227 * 3 2 1 7 7 C 1.37881 * 119.99541 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00070 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00070 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47058 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47279 * 179.97438 * 10 9 7 12 12 C 1.52991 * 109.47549 * 180.02562 * 11 10 9 13 13 C 1.50694 * 109.47551 * 179.97438 * 12 11 10 14 14 O 1.21287 * 119.99914 * 0.02562 * 13 12 11 15 15 N 1.34781 * 120.00378 * 179.97438 * 13 12 11 16 16 C 1.47428 * 125.64503 * 354.64727 * 15 13 12 17 17 C 1.54693 * 104.93884 * 204.06973 * 16 15 13 18 18 C 1.55151 * 101.67860 * 323.28050 * 17 16 15 19 19 C 1.47024 * 125.64847 * 174.95305 * 15 13 12 20 20 H 1.08994 * 109.88265 * 59.49204 * 19 15 13 21 21 C 1.52993 * 109.88483 * 298.47883 * 19 15 13 22 22 C 1.52994 * 109.47480 * 174.67879 * 21 19 15 23 23 O 1.42893 * 109.47322 * 185.10753 * 22 21 19 24 24 H 0.97002 * 119.99686 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46944 * 299.99511 * 9 7 2 26 26 H 1.08991 * 109.47307 * 59.99892 * 9 7 2 27 27 H 1.09003 * 109.47136 * 300.00197 * 10 9 7 28 28 H 1.09005 * 109.46800 * 59.99769 * 10 9 7 29 29 H 1.09003 * 109.47323 * 300.00236 * 11 10 9 30 30 H 1.08999 * 109.47090 * 59.99533 * 11 10 9 31 31 H 1.09005 * 109.47486 * 300.00297 * 12 11 10 32 32 H 1.09007 * 109.47182 * 59.99944 * 12 11 10 33 33 H 1.08993 * 110.36478 * 323.00328 * 16 15 13 34 34 H 1.09003 * 110.36395 * 85.32855 * 16 15 13 35 35 H 1.08997 * 111.09999 * 205.10946 * 17 16 15 36 36 H 1.08998 * 110.81079 * 81.32580 * 17 16 15 37 37 H 1.09001 * 110.71825 * 276.96876 * 18 17 16 38 38 H 1.09000 * 110.72197 * 153.70345 * 18 17 16 39 39 H 1.09002 * 109.46941 * 294.67724 * 21 19 15 40 40 H 1.09005 * 109.47290 * 54.67534 * 21 19 15 41 41 H 1.09003 * 109.47165 * 305.10867 * 22 21 19 42 42 H 1.09003 * 109.47099 * 65.10329 * 22 21 19 43 43 H 0.96703 * 113.99902 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6962 -1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 6 2.4741 -6.1501 0.0018 13 6 1.7206 -7.4551 0.0031 14 8 0.5077 -7.4551 0.0030 15 7 2.3944 -8.6224 0.0033 16 6 3.8569 -8.7703 -0.1094 17 6 4.0715 -10.1953 -0.6716 18 6 2.9416 -10.9866 0.0386 19 6 1.7921 -9.9594 0.1096 20 1 1.0994 -10.1207 -0.7163 21 6 1.0525 -10.0926 1.4423 22 6 0.3197 -11.4348 1.4870 23 8 -0.4661 -11.5090 2.6782 24 1 -0.4850 0.8401 -0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6245 -2.5571 -0.8896 27 1 2.8717 -3.6045 -0.8895 28 1 2.8717 -3.6044 0.8906 29 1 0.8536 -5.0446 0.8914 30 1 0.8530 -5.0451 -0.8885 31 1 3.1009 -6.0929 -0.8882 32 1 3.1007 -6.0920 0.8919 33 1 4.2616 -8.0263 -0.7954 34 1 4.3241 -8.6775 0.8711 35 1 5.0524 -10.5823 -0.3959 36 1 3.9377 -10.2090 -1.7533 37 1 3.2520 -11.2879 1.0391 38 1 2.6478 -11.8540 -0.5526 39 1 1.7692 -10.0424 2.2621 40 1 0.3311 -9.2813 1.5402 41 1 -0.3307 -11.5229 0.6167 42 1 1.0472 -12.2465 1.4805 43 1 -0.9592 -12.3355 2.7733 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589848156.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:32 Heat of formation + Delta-G solvation = -117.680671 kcal Electronic energy + Delta-G solvation = -20456.144470 eV Core-core repulsion = 17307.026294 eV Total energy + Delta-G solvation = -3149.118175 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.38218 -37.94245 -36.97046 -34.85676 -32.94897 -32.36602 -31.73522 -29.56045 -27.46409 -25.78308 -23.94555 -22.61262 -22.10187 -20.78893 -19.93835 -19.02163 -17.59488 -17.06845 -16.49563 -16.12257 -15.65319 -15.35116 -14.81398 -14.40395 -14.17665 -13.89936 -13.77846 -13.54930 -12.97580 -12.63069 -12.54440 -12.34033 -11.94969 -11.74835 -11.58183 -11.48592 -11.38974 -11.14260 -11.06547 -10.93380 -10.51084 -10.48124 -10.36555 -10.24119 -9.71629 -9.57125 -9.18424 -8.95848 -8.77070 -8.27365 -5.92204 -3.94758 2.72113 2.84725 3.37301 3.41530 3.43816 3.95350 4.14418 4.20320 4.51331 4.53492 4.76454 4.85630 4.91517 4.95029 5.00211 5.15065 5.23158 5.32325 5.35639 5.39173 5.41286 5.43024 5.49819 5.57533 5.75693 5.85191 5.93325 5.99545 6.17967 6.26732 6.37459 6.59047 6.88121 7.05706 7.23721 7.33868 7.45841 7.77202 7.93916 8.09469 8.25686 8.51099 9.12813 9.68607 11.19158 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030110 B = 0.002948 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.709659 B = 9494.666950 C =10195.974580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.288 1.288 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.133 4.133 13 C 0.528 3.472 14 O -0.530 6.530 15 N -0.623 5.623 16 C 0.099 3.901 17 C -0.134 4.134 18 C -0.130 4.130 19 C 0.141 3.859 20 H 0.075 0.925 21 C -0.133 4.133 22 C 0.082 3.918 23 O -0.573 6.573 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.046 0.954 42 H 0.045 0.955 43 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.208 -27.347 0.070 28.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.142 4.142 12 C -0.173 4.173 13 C 0.318 3.682 14 O -0.406 6.406 15 N -0.360 5.360 16 C -0.024 4.024 17 C -0.172 4.172 18 C -0.168 4.168 19 C 0.037 3.963 20 H 0.093 0.907 21 C -0.171 4.171 22 C 0.004 3.996 23 O -0.378 6.378 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 7.598 -26.520 0.157 27.588 hybrid contribution 0.307 0.337 -0.109 0.468 sum 7.905 -26.183 0.047 27.351 Atomic orbital electron populations 1.69967 1.06050 1.26600 1.50866 1.25042 0.94840 0.99208 0.95476 0.86669 0.79572 0.83269 0.78531 1.21323 1.20286 1.20300 1.21253 0.92939 0.91229 1.50497 0.92816 1.19089 0.94056 0.91233 0.97314 1.21644 0.99065 0.93988 1.00022 1.21464 0.97040 0.92698 1.02976 1.21787 1.00025 0.91713 1.03797 1.20835 0.87956 0.84385 0.74980 1.90709 1.14015 1.87021 1.48806 1.48673 1.07514 1.05326 1.74453 1.22285 0.81137 0.97798 1.01196 1.22746 0.99182 0.94460 1.00770 1.22778 0.94832 0.97481 1.01729 1.21388 0.95074 0.82636 0.97205 0.90655 1.21869 1.00236 0.97886 0.97150 1.22082 0.93370 0.97194 0.87001 1.86516 1.64862 1.43443 1.42999 0.92994 0.96580 0.96604 0.93509 0.93502 0.91786 0.91805 0.89306 0.89208 0.90135 0.91258 0.89678 0.90479 0.90281 0.90053 0.91192 0.89576 0.93583 0.93689 0.77496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.92 13.29 55.43 0.74 -27.18 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -15.26 9.11 -34.44 -0.31 -15.57 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 11 C -0.10 -1.94 4.50 -26.74 -0.12 -2.06 16 12 C -0.13 -1.90 4.80 -27.89 -0.13 -2.04 16 13 C 0.53 8.00 7.57 -10.99 -0.08 7.91 16 14 O -0.53 -10.18 15.15 5.55 0.08 -10.10 16 15 N -0.62 -7.12 3.07 -163.16 -0.50 -7.62 16 16 C 0.10 0.76 6.64 -2.64 -0.02 0.75 16 17 C -0.13 -0.75 7.07 -24.70 -0.17 -0.92 16 18 C -0.13 -0.79 5.73 -24.90 -0.14 -0.94 16 19 C 0.14 1.38 2.86 -66.95 -0.19 1.19 16 20 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 21 C -0.13 -1.47 5.06 -26.74 -0.14 -1.61 16 22 C 0.08 0.71 6.82 37.15 0.25 0.97 16 23 O -0.57 -5.75 13.66 -35.23 -0.48 -6.23 16 24 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 30 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 31 H 0.09 1.10 7.76 -51.93 -0.40 0.69 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.08 0.57 7.51 -51.93 -0.39 0.18 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.44 7.77 -51.93 -0.40 0.04 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.77 8.02 -51.93 -0.42 0.35 16 40 H 0.09 1.29 6.87 -51.93 -0.36 0.94 16 41 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.04 0.28 7.65 -51.93 -0.40 -0.11 16 43 H 0.38 1.85 9.12 45.56 0.42 2.27 16 LS Contribution 348.29 15.07 5.25 5.25 Total: -1.00 -35.98 348.29 -8.35 -44.33 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -6.98 Total: -2.76 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -1.43 Total: -12.83 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.24 Total: -34.81 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.40 Total: -16.33 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.98 -8.35 -44.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589848156.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.347 kcal (2) G-P(sol) polarization free energy of solvation -35.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds