Wall clock time and date at job start Mon Mar 30 2020 01:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00576 * 2 1 4 4 H 1.48499 * 109.46939 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47470 * 119.99506 * 3 2 1 6 6 H 1.48499 * 109.47276 * 240.00227 * 3 2 1 7 7 C 1.37881 * 119.99541 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00070 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00070 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47058 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47279 * 179.97438 * 10 9 7 12 12 C 1.52991 * 109.47549 * 180.02562 * 11 10 9 13 13 C 1.50694 * 109.47551 * 179.97438 * 12 11 10 14 14 O 1.21287 * 119.99914 * 0.02562 * 13 12 11 15 15 N 1.34781 * 120.00378 * 179.97438 * 13 12 11 16 16 C 1.47428 * 125.64503 * 354.64727 * 15 13 12 17 17 C 1.54693 * 104.93884 * 204.06973 * 16 15 13 18 18 C 1.55151 * 101.67860 * 323.28050 * 17 16 15 19 19 C 1.47024 * 125.64847 * 174.95305 * 15 13 12 20 20 H 1.08994 * 109.88265 * 59.49204 * 19 15 13 21 21 C 1.52993 * 109.88483 * 298.47883 * 19 15 13 22 22 C 1.52994 * 109.47480 * 174.67879 * 21 19 15 23 23 O 1.42893 * 109.47322 * 185.10753 * 22 21 19 24 24 H 0.97002 * 119.99686 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46944 * 299.99511 * 9 7 2 26 26 H 1.08991 * 109.47307 * 59.99892 * 9 7 2 27 27 H 1.09003 * 109.47136 * 300.00197 * 10 9 7 28 28 H 1.09005 * 109.46800 * 59.99769 * 10 9 7 29 29 H 1.09003 * 109.47323 * 300.00236 * 11 10 9 30 30 H 1.08999 * 109.47090 * 59.99533 * 11 10 9 31 31 H 1.09005 * 109.47486 * 300.00297 * 12 11 10 32 32 H 1.09007 * 109.47182 * 59.99944 * 12 11 10 33 33 H 1.08993 * 110.36478 * 323.00328 * 16 15 13 34 34 H 1.09003 * 110.36395 * 85.32855 * 16 15 13 35 35 H 1.08997 * 111.09999 * 205.10946 * 17 16 15 36 36 H 1.08998 * 110.81079 * 81.32580 * 17 16 15 37 37 H 1.09001 * 110.71825 * 276.96876 * 18 17 16 38 38 H 1.09000 * 110.72197 * 153.70345 * 18 17 16 39 39 H 1.09002 * 109.46941 * 294.67724 * 21 19 15 40 40 H 1.09005 * 109.47290 * 54.67534 * 21 19 15 41 41 H 1.09003 * 109.47165 * 305.10867 * 22 21 19 42 42 H 1.09003 * 109.47099 * 65.10329 * 22 21 19 43 43 H 0.96703 * 113.99902 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6962 -1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 6 2.4741 -6.1501 0.0018 13 6 1.7206 -7.4551 0.0031 14 8 0.5077 -7.4551 0.0030 15 7 2.3944 -8.6224 0.0033 16 6 3.8569 -8.7703 -0.1094 17 6 4.0715 -10.1953 -0.6716 18 6 2.9416 -10.9866 0.0386 19 6 1.7921 -9.9594 0.1096 20 1 1.0994 -10.1207 -0.7163 21 6 1.0525 -10.0926 1.4423 22 6 0.3197 -11.4348 1.4870 23 8 -0.4661 -11.5090 2.6782 24 1 -0.4850 0.8401 -0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6245 -2.5571 -0.8896 27 1 2.8717 -3.6045 -0.8895 28 1 2.8717 -3.6044 0.8906 29 1 0.8536 -5.0446 0.8914 30 1 0.8530 -5.0451 -0.8885 31 1 3.1009 -6.0929 -0.8882 32 1 3.1007 -6.0920 0.8919 33 1 4.2616 -8.0263 -0.7954 34 1 4.3241 -8.6775 0.8711 35 1 5.0524 -10.5823 -0.3959 36 1 3.9377 -10.2090 -1.7533 37 1 3.2520 -11.2879 1.0391 38 1 2.6478 -11.8540 -0.5526 39 1 1.7692 -10.0424 2.2621 40 1 0.3311 -9.2813 1.5402 41 1 -0.3307 -11.5229 0.6167 42 1 1.0472 -12.2465 1.4805 43 1 -0.9592 -12.3355 2.7733 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589848156.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:32 Heat of formation + Delta-G solvation = -143.476306 kcal Electronic energy + Delta-G solvation = -20457.263052 eV Core-core repulsion = 17307.026294 eV Total energy + Delta-G solvation = -3150.236758 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.32712 -38.92698 -37.71890 -36.63566 -34.67101 -33.56497 -32.51654 -31.27106 -28.19700 -27.49308 -25.12062 -23.81614 -23.07391 -21.91695 -21.42069 -19.97444 -18.46954 -18.37400 -17.95046 -17.37462 -16.76748 -16.50079 -16.23479 -15.86501 -15.24547 -14.92296 -14.61497 -14.41098 -14.17977 -13.99179 -13.76795 -13.52495 -13.32890 -13.25459 -12.90337 -12.77061 -12.38594 -12.21858 -12.17671 -12.13768 -12.03824 -11.77931 -11.61251 -11.40335 -11.36280 -11.17320 -10.94379 -10.72504 -10.55308 -9.69811 -8.19141 -6.31858 1.39760 1.44288 1.52129 1.58699 1.94711 2.41708 3.13343 3.26753 3.48347 3.65432 3.83861 3.97749 4.00765 4.08975 4.14327 4.21753 4.31839 4.40644 4.50645 4.54745 4.62716 4.63910 4.76016 4.81920 4.83750 4.92408 4.97616 5.05079 5.11001 5.15429 5.16711 5.30206 5.34055 5.37007 5.48197 5.54725 5.75891 5.86445 6.24084 6.48424 6.86321 6.87659 7.15467 7.37809 8.93142 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030110 B = 0.002948 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.709659 B = 9494.666950 C =10195.974580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.007 4.007 3 Si 0.971 3.029 4 H -0.285 1.285 5 H -0.264 1.264 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.019 3.981 10 C -0.094 4.094 11 C -0.095 4.095 12 C -0.122 4.122 13 C 0.521 3.479 14 O -0.587 6.587 15 N -0.620 5.620 16 C 0.086 3.914 17 C -0.125 4.125 18 C -0.120 4.120 19 C 0.134 3.866 20 H 0.061 0.939 21 C -0.130 4.130 22 C 0.084 3.916 23 O -0.601 6.601 24 H 0.263 0.737 25 H -0.017 1.017 26 H -0.016 1.016 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.035 0.965 41 H 0.048 0.952 42 H 0.080 0.920 43 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.785 -28.791 -0.192 31.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.795 3.205 4 H -0.210 1.210 5 H -0.189 1.189 6 H -0.188 1.188 7 C -0.581 4.581 8 H 0.085 0.915 9 C -0.018 4.018 10 C -0.131 4.131 11 C -0.134 4.134 12 C -0.161 4.161 13 C 0.311 3.689 14 O -0.467 6.467 15 N -0.354 5.354 16 C -0.035 4.035 17 C -0.162 4.162 18 C -0.157 4.157 19 C 0.030 3.970 20 H 0.080 0.920 21 C -0.169 4.169 22 C 0.006 3.994 23 O -0.410 6.410 24 H 0.072 0.928 25 H 0.001 0.999 26 H 0.003 0.997 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.131 0.869 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.121 0.879 39 H 0.087 0.913 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.098 0.902 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 11.228 -28.025 -0.107 30.191 hybrid contribution -0.857 0.727 -0.007 1.124 sum 10.372 -27.297 -0.114 29.202 Atomic orbital electron populations 1.70134 1.08148 1.27862 1.51776 1.26123 0.95794 1.03838 0.94703 0.85410 0.78154 0.77529 0.79398 1.21046 1.18866 1.18787 1.21729 0.93781 0.92169 1.50457 0.91462 1.19046 0.94666 0.93841 0.94235 1.21436 0.97797 0.92541 1.01358 1.21248 0.97474 0.93775 1.00873 1.21644 0.98849 0.89364 1.06258 1.20947 0.87342 0.85797 0.74794 1.90688 1.16365 1.87929 1.51749 1.48732 1.09461 1.04897 1.72275 1.22668 0.78454 0.99857 1.02534 1.22770 1.00204 0.92581 1.00694 1.22786 0.93118 0.96809 1.03023 1.21586 0.96514 0.83024 0.95828 0.92048 1.21821 0.99368 0.97693 0.97971 1.22114 0.93947 0.96676 0.86663 1.86460 1.65557 1.45429 1.43568 0.92823 0.99884 0.99745 0.91874 0.92105 0.94204 0.93870 0.86464 0.86854 0.89096 0.89912 0.86927 0.90324 0.89102 0.87911 0.91269 0.94633 0.93415 0.90191 0.75085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.19 13.29 21.45 0.28 -59.91 16 2 C -0.01 -0.45 5.46 84.66 0.46 0.02 16 3 Si 0.97 45.39 29.54 68.60 2.03 47.42 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.54 -32.15 9.11 25.60 0.23 -31.92 16 8 H 0.07 3.71 7.74 -2.91 -0.02 3.68 16 9 C 0.02 1.09 4.97 29.85 0.15 1.24 16 10 C -0.09 -3.99 5.15 30.59 0.16 -3.83 16 11 C -0.10 -3.70 4.50 30.59 0.14 -3.56 16 12 C -0.12 -3.36 4.80 29.84 0.14 -3.22 16 13 C 0.52 16.05 7.57 87.65 0.66 16.71 16 14 O -0.59 -24.16 15.15 -3.05 -0.05 -24.20 16 15 N -0.62 -13.59 3.07 -788.49 -2.42 -16.00 16 16 C 0.09 1.06 6.64 86.78 0.58 1.64 16 17 C -0.12 -0.89 7.07 31.91 0.23 -0.67 16 18 C -0.12 -1.05 5.73 31.78 0.18 -0.86 16 19 C 0.13 2.52 2.86 45.34 0.13 2.65 16 20 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 21 C -0.13 -2.92 5.06 30.59 0.15 -2.77 16 22 C 0.08 1.39 6.82 71.98 0.49 1.88 16 23 O -0.60 -11.88 13.66 -148.98 -2.03 -13.92 16 24 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 25 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 26 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 27 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 29 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 30 H 0.04 1.82 8.10 -2.39 -0.02 1.80 16 31 H 0.12 2.58 7.76 -2.38 -0.02 2.57 16 32 H 0.11 2.61 8.14 -2.38 -0.02 2.59 16 33 H 0.09 0.96 7.51 -2.39 -0.02 0.94 16 34 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.09 0.64 7.77 -2.39 -0.02 0.62 16 38 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.07 1.50 8.02 -2.39 -0.02 1.49 16 40 H 0.03 1.15 6.87 -2.38 -0.02 1.14 16 41 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.08 0.77 7.65 -2.39 -0.02 0.76 16 43 H 0.40 3.56 9.12 -74.05 -0.68 2.89 16 Total: -1.00 -83.28 348.29 1.81 -81.47 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 0.29 Total: 7.83 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: 3.70 Total: -22.69 kcal Atomic # 7 Polarization: -73.78 SS G_CDS: -2.13 Total: -75.91 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -2.08 Total: -38.12 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -83.28 1.81 -81.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589848156.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.002 kcal (2) G-P(sol) polarization free energy of solvation -83.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds