Wall clock time and date at job start Mon Mar 30 2020 01:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.47185 * 2 1 4 4 C 1.36939 * 119.99793 * 95.94742 * 3 2 1 5 5 H 1.07997 * 119.99949 * 156.49815 * 4 3 2 6 6 C 1.38809 * 120.00193 * 336.50147 * 4 3 2 7 7 N 1.31626 * 119.99783 * 358.45736 * 6 4 3 8 8 Si 1.86799 * 120.00287 * 178.45859 * 6 4 3 9 9 H 1.48498 * 109.47033 * 59.99885 * 8 6 4 10 10 H 1.48497 * 109.47179 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46831 * 299.99972 * 8 6 4 12 12 C 1.46495 * 119.99991 * 275.95101 * 3 2 1 13 13 H 1.09004 * 109.47526 * 352.01112 * 12 3 2 14 14 C 1.52999 * 109.46962 * 232.00526 * 12 3 2 15 15 C 1.50699 * 109.47159 * 112.01035 * 12 3 2 16 16 C 1.36137 * 120.17263 * 23.01711 * 15 12 3 17 17 C 1.39330 * 120.98646 * 180.02562 * 16 15 12 18 18 C 1.36120 * 120.99487 * 359.97438 * 17 16 15 19 19 C 1.40507 * 119.64941 * 0.02562 * 18 17 16 20 20 C 1.40555 * 121.28482 * 179.97438 * 19 18 17 21 21 C 1.36081 * 119.65084 * 180.02562 * 20 19 18 22 22 C 1.39383 * 120.99665 * 0.02562 * 21 20 19 23 23 C 1.36097 * 120.99248 * 359.96194 * 22 21 20 24 24 C 1.40505 * 120.17629 * 203.03986 * 15 12 3 25 25 H 1.09004 * 109.46766 * 66.40345 * 1 2 3 26 26 H 1.08995 * 109.46958 * 186.39751 * 1 2 3 27 27 H 1.08995 * 109.47313 * 306.40069 * 1 2 3 28 28 H 1.08997 * 109.47443 * 240.00381 * 2 1 3 29 29 H 1.08995 * 109.47284 * 119.99975 * 2 1 3 30 30 H 0.97005 * 119.99526 * 180.02562 * 7 6 4 31 31 H 1.09004 * 109.46764 * 60.00773 * 14 12 3 32 32 H 1.08999 * 109.47090 * 179.97438 * 14 12 3 33 33 H 1.08995 * 109.47483 * 299.99992 * 14 12 3 34 34 H 1.07997 * 119.50024 * 0.04092 * 16 15 12 35 35 H 1.08006 * 119.50304 * 179.97438 * 17 16 15 36 36 H 1.07996 * 120.17766 * 179.73030 * 18 17 16 37 37 H 1.08003 * 120.17431 * 0.02562 * 20 19 18 38 38 H 1.08004 * 119.50369 * 180.02562 * 21 20 19 39 39 H 1.07994 * 119.50782 * 179.97438 * 22 21 20 40 40 H 1.08000 * 120.17489 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3624 1.9858 1.1796 5 1 3.0536 2.8157 1.1795 6 6 1.8230 1.5320 2.3753 7 7 0.9574 0.5403 2.3724 8 14 2.3253 2.3285 3.9886 9 1 1.9716 3.7704 3.9599 10 1 1.6122 1.6667 5.1105 11 1 3.7908 2.1819 4.1777 12 6 2.1385 2.1157 -1.2618 13 1 1.9587 1.4372 -2.0958 14 6 3.5461 2.7041 -1.3774 15 6 1.1242 3.2298 -1.2932 16 6 0.6175 3.7266 -0.1314 17 6 -0.3214 4.7561 -0.1406 18 6 -0.7588 5.2954 -1.3114 19 6 -0.2585 4.8086 -2.5307 20 6 -0.6866 5.3398 -3.7596 21 6 -0.1804 4.8428 -4.9208 22 6 0.7580 3.8123 -4.9118 23 6 1.1960 3.2735 -3.7413 24 6 0.6963 3.7610 -2.5215 25 1 -0.3633 0.4114 -0.9418 26 1 -0.3633 -1.0212 0.1145 27 1 -0.3633 0.6098 0.8271 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 0.5802 0.2234 3.2080 31 1 4.2797 1.8983 -1.3548 32 1 3.6356 3.2502 -2.3164 33 1 3.7258 3.3827 -0.5435 34 1 0.9483 3.3168 0.8114 35 1 -0.7079 5.1319 0.7953 36 1 -1.4901 6.0900 -1.3032 37 1 -1.4135 6.1383 -3.7820 38 1 -0.5107 5.2531 -5.8637 39 1 1.1436 3.4357 -5.8477 40 1 1.9238 2.4756 -3.7497 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591012472.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:56 Heat of formation + Delta-G solvation = 73.344626 kcal Electronic energy + Delta-G solvation = -21013.125975 eV Core-core repulsion = 18179.600198 eV Total energy + Delta-G solvation = -2833.525777 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.99396 -37.06220 -35.43102 -33.24388 -31.15056 -30.19720 -29.75175 -28.19737 -27.71125 -24.44056 -22.94971 -22.38523 -22.24970 -20.69466 -19.37064 -16.91253 -16.69152 -16.16183 -15.61467 -15.06892 -14.05603 -14.00124 -13.67282 -13.35159 -13.13249 -13.11209 -12.81853 -12.29330 -12.10654 -11.96035 -11.51755 -11.31183 -11.15816 -11.12587 -10.86209 -10.75458 -10.65333 -10.42321 -10.27679 -10.04129 -9.94876 -9.55228 -9.37054 -9.16757 -8.32547 -8.02791 -7.21179 -6.72841 -5.74834 -3.24610 1.06011 1.58035 2.61265 3.34090 3.40464 3.41441 3.58155 4.41943 4.70217 5.03823 5.16103 5.27372 5.33449 5.38399 5.53065 5.63030 5.71407 5.89806 5.93348 6.00235 6.19905 6.26544 6.31532 6.39036 6.55543 6.58063 6.67268 6.72952 6.81096 6.83163 6.93372 6.96091 7.05493 7.15492 7.23576 7.32116 7.34506 7.61159 7.69632 7.81790 7.84177 8.21793 8.41558 9.24404 9.81969 10.31774 11.22447 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023253 B = 0.006664 C = 0.006078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.863759 B = 4200.797003 C = 4605.485909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.176 3.824 3 N -0.592 5.592 4 C -0.242 4.242 5 H 0.072 0.928 6 C -0.001 4.001 7 N -0.896 5.896 8 Si 0.900 3.100 9 H -0.282 1.282 10 H -0.290 1.290 11 H -0.284 1.284 12 C 0.207 3.793 13 H 0.061 0.939 14 C -0.150 4.150 15 C -0.072 4.072 16 C -0.104 4.104 17 C -0.107 4.107 18 C -0.139 4.139 19 C -0.058 4.058 20 C -0.110 4.110 21 C -0.130 4.130 22 C -0.135 4.135 23 C -0.099 4.099 24 C -0.049 4.049 25 H 0.001 0.999 26 H 0.017 0.983 27 H 0.093 0.907 28 H -0.003 1.003 29 H 0.087 0.913 30 H 0.253 0.747 31 H 0.052 0.948 32 H 0.041 0.959 33 H 0.058 0.942 34 H 0.175 0.825 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.147 5.948 -9.615 11.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.051 3.949 3 N -0.313 5.313 4 C -0.371 4.371 5 H 0.090 0.910 6 C -0.198 4.198 7 N -0.541 5.541 8 Si 0.730 3.270 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.210 1.210 12 C 0.099 3.901 13 H 0.079 0.921 14 C -0.208 4.208 15 C -0.074 4.074 16 C -0.121 4.121 17 C -0.126 4.126 18 C -0.157 4.157 19 C -0.058 4.058 20 C -0.128 4.128 21 C -0.148 4.148 22 C -0.153 4.153 23 C -0.117 4.117 24 C -0.050 4.050 25 H 0.020 0.980 26 H 0.036 0.964 27 H 0.112 0.888 28 H 0.015 0.985 29 H 0.105 0.895 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.191 0.809 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.211 5.821 -9.444 11.159 hybrid contribution -0.092 0.504 0.815 0.962 sum -1.303 6.325 -8.629 10.778 Atomic orbital electron populations 1.22425 0.99124 0.98992 0.99697 1.20678 0.92543 0.84113 0.97570 1.44160 1.76070 1.09934 1.01185 1.19085 1.19728 1.14147 0.84150 0.90996 1.25080 0.97656 0.99034 0.98069 1.70129 1.31152 1.27735 1.25099 0.86397 0.78035 0.79012 0.83578 1.20882 1.21581 1.21043 1.19239 0.90987 0.89937 0.89959 0.92126 1.22121 0.97597 1.00768 1.00356 1.20837 0.98197 0.97097 0.91270 1.22134 0.94041 0.93437 1.02473 1.21075 0.97288 0.96840 0.97350 1.20851 1.01446 1.01244 0.92124 1.18014 0.97561 0.96694 0.93511 1.20922 1.00024 0.99859 0.91984 1.20668 0.98510 0.97976 0.97692 1.20703 0.98841 0.97924 0.97803 1.21101 0.99339 0.99406 0.91804 1.18151 0.96916 0.96076 0.93847 0.97967 0.96393 0.88813 0.98522 0.89505 0.93637 0.92863 0.94013 0.92304 0.80861 0.86959 0.86894 0.86528 0.86932 0.86801 0.85808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.49 37.16 0.35 -3.00 16 2 C 0.18 4.15 5.55 -4.04 -0.02 4.12 16 3 N -0.59 -13.80 2.25 -166.98 -0.38 -14.18 16 4 C -0.24 -5.98 5.93 -15.06 -0.09 -6.07 16 5 H 0.07 1.77 6.37 -52.49 -0.33 1.44 16 6 C 0.00 -0.01 5.04 -17.43 -0.09 -0.10 16 7 N -0.90 -23.57 7.81 55.49 0.43 -23.13 16 8 Si 0.90 20.49 29.55 -169.99 -5.02 15.47 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.21 4.20 2.37 -69.09 -0.16 4.04 16 13 H 0.06 1.19 6.51 -51.93 -0.34 0.86 16 14 C -0.15 -2.74 8.98 37.16 0.33 -2.40 16 15 C -0.07 -1.45 5.08 -104.52 -0.53 -1.98 16 16 C -0.10 -2.20 9.02 -39.93 -0.36 -2.56 16 17 C -0.11 -2.00 9.95 -39.94 -0.40 -2.39 16 18 C -0.14 -2.35 9.77 -39.49 -0.39 -2.73 16 19 C -0.06 -1.01 5.74 -106.83 -0.61 -1.62 16 20 C -0.11 -1.61 9.77 -39.48 -0.39 -2.00 16 21 C -0.13 -1.76 9.95 -39.93 -0.40 -2.16 16 22 C -0.13 -1.89 9.95 -39.92 -0.40 -2.28 16 23 C -0.10 -1.59 8.96 -39.48 -0.35 -1.95 16 24 C -0.05 -0.91 5.74 -106.84 -0.61 -1.53 16 25 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 2.45 6.05 -51.93 -0.31 2.14 16 28 H 0.00 -0.07 7.99 -51.93 -0.41 -0.49 16 29 H 0.09 2.25 6.23 -51.93 -0.32 1.93 16 30 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.04 0.67 7.69 -51.93 -0.40 0.27 16 33 H 0.06 1.14 6.68 -51.93 -0.35 0.79 16 34 H 0.17 4.15 4.34 -52.49 -0.23 3.92 16 35 H 0.11 1.87 8.06 -52.48 -0.42 1.45 16 36 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 38 H 0.11 1.19 8.06 -52.48 -0.42 0.77 16 39 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.12 1.86 6.39 -52.49 -0.34 1.52 16 LS Contribution 313.49 15.07 4.72 4.72 Total: -1.00 -26.31 313.49 -9.90 -36.21 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -5.55 Total: 5.53 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -4.11 Total: -24.62 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.06 Total: -37.31 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -26.31 -9.90 -36.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591012472.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.555 kcal (2) G-P(sol) polarization free energy of solvation -26.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds