Wall clock time and date at job start Mon Mar 30 2020 01:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.47185 * 2 1 4 4 C 1.36939 * 119.99793 * 95.94742 * 3 2 1 5 5 H 1.07997 * 119.99949 * 156.49815 * 4 3 2 6 6 C 1.38809 * 120.00193 * 336.50147 * 4 3 2 7 7 N 1.31626 * 119.99783 * 358.45736 * 6 4 3 8 8 Si 1.86799 * 120.00287 * 178.45859 * 6 4 3 9 9 H 1.48498 * 109.47033 * 59.99885 * 8 6 4 10 10 H 1.48497 * 109.47179 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46831 * 299.99972 * 8 6 4 12 12 C 1.46495 * 119.99991 * 275.95101 * 3 2 1 13 13 H 1.09004 * 109.47526 * 352.01112 * 12 3 2 14 14 C 1.52999 * 109.46962 * 232.00526 * 12 3 2 15 15 C 1.50699 * 109.47159 * 112.01035 * 12 3 2 16 16 C 1.36137 * 120.17263 * 23.01711 * 15 12 3 17 17 C 1.39330 * 120.98646 * 180.02562 * 16 15 12 18 18 C 1.36120 * 120.99487 * 359.97438 * 17 16 15 19 19 C 1.40507 * 119.64941 * 0.02562 * 18 17 16 20 20 C 1.40555 * 121.28482 * 179.97438 * 19 18 17 21 21 C 1.36081 * 119.65084 * 180.02562 * 20 19 18 22 22 C 1.39383 * 120.99665 * 0.02562 * 21 20 19 23 23 C 1.36097 * 120.99248 * 359.96194 * 22 21 20 24 24 C 1.40505 * 120.17629 * 203.03986 * 15 12 3 25 25 H 1.09004 * 109.46766 * 66.40345 * 1 2 3 26 26 H 1.08995 * 109.46958 * 186.39751 * 1 2 3 27 27 H 1.08995 * 109.47313 * 306.40069 * 1 2 3 28 28 H 1.08997 * 109.47443 * 240.00381 * 2 1 3 29 29 H 1.08995 * 109.47284 * 119.99975 * 2 1 3 30 30 H 0.97005 * 119.99526 * 180.02562 * 7 6 4 31 31 H 1.09004 * 109.46764 * 60.00773 * 14 12 3 32 32 H 1.08999 * 109.47090 * 179.97438 * 14 12 3 33 33 H 1.08995 * 109.47483 * 299.99992 * 14 12 3 34 34 H 1.07997 * 119.50024 * 0.04092 * 16 15 12 35 35 H 1.08006 * 119.50304 * 179.97438 * 17 16 15 36 36 H 1.07996 * 120.17766 * 179.73030 * 18 17 16 37 37 H 1.08003 * 120.17431 * 0.02562 * 20 19 18 38 38 H 1.08004 * 119.50369 * 180.02562 * 21 20 19 39 39 H 1.07994 * 119.50782 * 179.97438 * 22 21 20 40 40 H 1.08000 * 120.17489 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3624 1.9858 1.1796 5 1 3.0536 2.8157 1.1795 6 6 1.8230 1.5320 2.3753 7 7 0.9574 0.5403 2.3724 8 14 2.3253 2.3285 3.9886 9 1 1.9716 3.7704 3.9599 10 1 1.6122 1.6667 5.1105 11 1 3.7908 2.1819 4.1777 12 6 2.1385 2.1157 -1.2618 13 1 1.9587 1.4372 -2.0958 14 6 3.5461 2.7041 -1.3774 15 6 1.1242 3.2298 -1.2932 16 6 0.6175 3.7266 -0.1314 17 6 -0.3214 4.7561 -0.1406 18 6 -0.7588 5.2954 -1.3114 19 6 -0.2585 4.8086 -2.5307 20 6 -0.6866 5.3398 -3.7596 21 6 -0.1804 4.8428 -4.9208 22 6 0.7580 3.8123 -4.9118 23 6 1.1960 3.2735 -3.7413 24 6 0.6963 3.7610 -2.5215 25 1 -0.3633 0.4114 -0.9418 26 1 -0.3633 -1.0212 0.1145 27 1 -0.3633 0.6098 0.8271 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 0.5802 0.2234 3.2080 31 1 4.2797 1.8983 -1.3548 32 1 3.6356 3.2502 -2.3164 33 1 3.7258 3.3827 -0.5435 34 1 0.9483 3.3168 0.8114 35 1 -0.7079 5.1319 0.7953 36 1 -1.4901 6.0900 -1.3032 37 1 -1.4135 6.1383 -3.7820 38 1 -0.5107 5.2531 -5.8637 39 1 1.1436 3.4357 -5.8477 40 1 1.9238 2.4756 -3.7497 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591012472.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:55 Heat of formation + Delta-G solvation = 63.049255 kcal Electronic energy + Delta-G solvation = -21013.572416 eV Core-core repulsion = 18179.600198 eV Total energy + Delta-G solvation = -2833.972218 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.31284 -38.64159 -36.82080 -34.83905 -32.81263 -31.84913 -31.05712 -29.63957 -29.37266 -26.24571 -24.38399 -23.74847 -23.62511 -22.42259 -20.93020 -18.40043 -18.16998 -17.56798 -17.18941 -16.61615 -15.61716 -15.55891 -15.23247 -14.86458 -14.57935 -14.44532 -14.14419 -13.91816 -13.60724 -13.40562 -13.31411 -12.91178 -12.76978 -12.71138 -12.47099 -12.45808 -12.12107 -12.00703 -11.91744 -11.67994 -11.63068 -11.27201 -11.08493 -10.49843 -10.25345 -9.33544 -8.59734 -8.53102 -7.68994 -5.18036 -0.19051 0.29476 1.30972 1.49405 1.51146 1.55835 2.30787 2.54366 3.33660 3.40109 3.62658 3.85034 4.12796 4.13334 4.28554 4.37847 4.44476 4.47281 4.63588 4.68901 4.70563 4.78631 4.88004 4.95576 5.06782 5.09860 5.13676 5.19518 5.29406 5.32862 5.43097 5.47682 5.53830 5.61933 5.69333 5.72040 5.85496 5.90153 6.12044 6.14371 6.25409 6.36488 6.50644 7.30312 7.96768 8.41320 9.27376 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023253 B = 0.006664 C = 0.006078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.863759 B = 4200.797003 C = 4605.485909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.179 3.821 3 N -0.602 5.602 4 C -0.231 4.231 5 H 0.068 0.932 6 C -0.045 4.045 7 N -0.917 5.917 8 Si 0.950 3.050 9 H -0.282 1.282 10 H -0.297 1.297 11 H -0.283 1.283 12 C 0.205 3.795 13 H 0.067 0.933 14 C -0.138 4.138 15 C -0.085 4.085 16 C -0.132 4.132 17 C -0.131 4.131 18 C -0.126 4.126 19 C -0.078 4.078 20 C -0.113 4.113 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.121 4.121 24 C -0.067 4.067 25 H 0.002 0.998 26 H 0.026 0.974 27 H 0.065 0.935 28 H 0.015 0.985 29 H 0.061 0.939 30 H 0.244 0.756 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.140 0.860 35 H 0.120 0.880 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.147 0.853 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.579 7.523 -12.739 14.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.054 3.946 3 N -0.324 5.324 4 C -0.361 4.361 5 H 0.086 0.914 6 C -0.240 4.240 7 N -0.564 5.564 8 Si 0.780 3.220 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.210 1.210 12 C 0.098 3.902 13 H 0.085 0.915 14 C -0.197 4.197 15 C -0.087 4.087 16 C -0.150 4.150 17 C -0.149 4.149 18 C -0.144 4.144 19 C -0.078 4.078 20 C -0.131 4.131 21 C -0.142 4.142 22 C -0.139 4.139 23 C -0.139 4.139 24 C -0.068 4.068 25 H 0.021 0.979 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.033 0.967 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.158 0.842 35 H 0.138 0.862 36 H 0.164 0.836 37 H 0.164 0.836 38 H 0.169 0.831 39 H 0.165 0.835 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.627 7.416 -12.588 14.700 hybrid contribution 0.019 0.095 1.553 1.556 sum -1.609 7.511 -11.035 13.445 Atomic orbital electron populations 1.22210 0.99073 0.98855 0.98385 1.20545 0.92514 0.84516 0.97038 1.44270 1.76095 1.10086 1.01918 1.19142 1.18812 1.13250 0.84860 0.91433 1.25567 0.98336 0.99915 1.00216 1.70284 1.32441 1.28977 1.24720 0.85593 0.77417 0.78155 0.80807 1.20806 1.22366 1.20952 1.19371 0.92155 0.90156 0.88529 0.91532 1.21991 0.96366 1.00510 1.00804 1.20733 0.98447 0.97526 0.92032 1.21866 0.96211 0.95440 1.01437 1.21133 0.97842 0.97107 0.98783 1.21192 1.00878 1.00974 0.91317 1.18378 0.97647 0.96808 0.94961 1.21270 1.00376 1.00372 0.91067 1.21161 0.97156 0.96916 0.98943 1.21156 0.97588 0.96897 0.98240 1.21226 1.00449 1.00431 0.91803 1.18325 0.97727 0.96879 0.93857 0.97867 0.95476 0.91653 0.96734 0.92120 0.94597 0.92633 0.91675 0.94061 0.84237 0.86155 0.83648 0.83604 0.83121 0.83538 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.04 9.49 71.98 0.68 -5.36 16 2 C 0.18 8.63 5.55 86.38 0.48 9.11 16 3 N -0.60 -28.79 2.25 -682.22 -1.53 -30.33 16 4 C -0.23 -11.83 5.93 84.03 0.50 -11.33 16 5 H 0.07 3.47 6.37 -2.91 -0.02 3.45 16 6 C -0.05 -2.39 5.04 84.86 0.43 -1.96 16 7 N -0.92 -50.38 7.81 21.65 0.17 -50.21 16 8 Si 0.95 43.76 29.55 68.60 2.03 45.78 16 9 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 10 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 C 0.20 8.37 2.37 44.25 0.11 8.48 16 13 H 0.07 2.59 6.51 -2.38 -0.02 2.58 16 14 C -0.14 -5.02 8.98 71.98 0.65 -4.37 16 15 C -0.09 -3.49 5.08 -19.80 -0.10 -3.59 16 16 C -0.13 -5.81 9.02 22.04 0.20 -5.61 16 17 C -0.13 -4.92 9.95 22.04 0.22 -4.70 16 18 C -0.13 -4.06 9.77 22.33 0.22 -3.84 16 19 C -0.08 -2.54 5.74 -21.30 -0.12 -2.66 16 20 C -0.11 -2.82 9.77 22.33 0.22 -2.61 16 21 C -0.12 -2.69 9.95 22.04 0.22 -2.47 16 22 C -0.12 -2.84 9.95 22.05 0.22 -2.63 16 23 C -0.12 -3.61 8.96 22.33 0.20 -3.41 16 24 C -0.07 -2.41 5.74 -21.30 -0.12 -2.53 16 25 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 26 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.06 3.55 6.05 -2.39 -0.01 3.54 16 28 H 0.01 0.64 7.99 -2.39 -0.02 0.62 16 29 H 0.06 3.25 6.23 -2.39 -0.01 3.24 16 30 H 0.24 13.35 8.31 -92.70 -0.77 12.58 16 31 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.06 2.03 7.69 -2.39 -0.02 2.01 16 33 H 0.04 1.62 6.68 -2.39 -0.02 1.60 16 34 H 0.14 7.08 4.34 -2.91 -0.01 7.06 16 35 H 0.12 4.13 8.06 -2.91 -0.02 4.10 16 36 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 37 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 38 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 40 H 0.13 3.58 6.39 -2.91 -0.02 3.56 16 Total: -1.00 -58.88 313.49 5.68 -53.20 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 1.03 Total: 21.03 kcal Atomic # 6 Polarization: -43.47 SS G_CDS: 3.99 Total: -39.48 kcal Atomic # 7 Polarization: -79.17 SS G_CDS: -1.36 Total: -80.54 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -58.88 5.68 -53.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591012472.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.254 kcal (2) G-P(sol) polarization free energy of solvation -58.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds