Wall clock time and date at job start Mon Mar 30 2020 01:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00558 * 2 1 4 4 H 1.48504 * 109.46967 * 269.99915 * 3 2 1 5 5 H 1.48505 * 109.47161 * 29.99430 * 3 2 1 6 6 H 1.48498 * 109.47614 * 149.99961 * 3 2 1 7 7 C 1.37879 * 119.99367 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99461 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00369 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.27070 * 302.08436 * 9 7 2 11 11 C 1.54592 * 110.31006 * 64.27980 * 9 7 2 12 12 C 1.54941 * 102.91953 * 140.87436 * 11 9 7 13 13 N 1.48528 * 103.22644 * 322.58556 * 12 11 9 14 14 C 1.46905 * 110.99503 * 159.72074 * 13 12 11 15 15 C 1.52997 * 109.47150 * 52.60569 * 14 13 12 16 16 O 1.42898 * 109.47319 * 64.99949 * 15 14 13 17 17 C 1.42902 * 114.00186 * 180.02562 * 16 15 14 18 18 C 1.52995 * 109.47230 * 179.97438 * 17 16 15 19 19 C 1.53781 * 113.61674 * 274.13945 * 18 17 16 20 20 C 1.53958 * 87.02068 * 220.04755 * 19 18 17 21 21 C 1.53782 * 113.61621 * 176.52802 * 18 17 16 22 22 C 1.47903 * 105.82106 * 39.21122 * 13 12 11 23 23 H 0.97008 * 119.99487 * 0.02562 * 1 2 3 24 24 H 0.96702 * 113.99804 * 57.90865 * 10 9 7 25 25 H 1.09003 * 110.72371 * 259.23297 * 11 9 7 26 26 H 1.09000 * 110.72388 * 22.34253 * 11 9 7 27 27 H 1.09004 * 110.66028 * 204.14971 * 12 11 9 28 28 H 1.08997 * 110.66081 * 81.02478 * 12 11 9 29 29 H 1.09001 * 109.47063 * 292.59965 * 14 13 12 30 30 H 1.09004 * 109.46681 * 172.60590 * 14 13 12 31 31 H 1.09002 * 109.47153 * 304.99641 * 15 14 13 32 32 H 1.09001 * 109.46832 * 184.99832 * 15 14 13 33 33 H 1.09001 * 109.46918 * 299.99649 * 17 16 15 34 34 H 1.08999 * 109.46857 * 59.99535 * 17 16 15 35 35 H 1.09000 * 112.84933 * 45.33048 * 18 17 16 36 36 H 1.09005 * 113.61438 * 334.56353 * 19 18 17 37 37 H 1.08994 * 113.62032 * 105.46557 * 19 18 17 38 38 H 1.08995 * 113.53639 * 270.81165 * 20 19 18 39 39 H 1.09000 * 113.74607 * 139.93670 * 20 19 18 40 40 H 1.08996 * 113.61400 * 254.52944 * 21 18 17 41 41 H 1.09004 * 113.60799 * 25.43258 * 21 18 17 42 42 H 1.08990 * 109.92122 * 94.02295 * 22 13 12 43 43 H 1.09002 * 109.91549 * 215.31353 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4468 2.6527 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.3862 -2.5717 1.1360 11 6 0.4382 -2.6496 -1.3059 12 6 0.6030 -4.1523 -1.6454 13 7 2.0061 -4.4380 -1.2508 14 6 2.2119 -5.8777 -1.0434 15 6 1.7303 -6.6445 -2.2767 16 8 2.5471 -6.3036 -3.3985 17 6 2.1794 -6.9686 -4.6087 18 6 3.1156 -6.5299 -5.7365 19 6 2.6690 -5.2376 -6.4402 20 6 3.1006 -5.9024 -7.7601 21 6 2.8574 -7.2542 -7.0683 22 6 2.2342 -3.6843 0.0012 23 1 -0.4850 0.8402 -0.0004 24 1 -0.2554 -1.8501 1.1884 25 1 -0.6107 -2.4048 -1.1381 26 1 0.8571 -2.0249 -2.0948 27 1 0.4610 -4.3234 -2.7126 28 1 -0.0915 -4.7568 -1.0621 29 1 1.6473 -6.2033 -0.1697 30 1 3.2723 -6.0739 -0.8846 31 1 0.6943 -6.3795 -2.4876 32 1 1.8003 -7.7159 -2.0885 33 1 2.2583 -8.0468 -4.4693 34 1 1.1527 -6.7100 -4.8679 35 1 4.1640 -6.5248 -5.4384 36 1 1.5968 -5.0528 -6.3747 37 1 3.2668 -4.3661 -6.1734 38 1 4.1450 -5.7245 -8.0159 39 1 2.4223 -5.7091 -8.5912 40 1 3.6071 -8.0083 -7.3078 41 1 1.8367 -7.6217 -7.1746 42 1 2.0422 -4.3258 0.8611 43 1 3.2597 -3.3158 0.0312 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592153377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:12 Heat of formation + Delta-G solvation = -76.298100 kcal Electronic energy + Delta-G solvation = -21350.966401 eV Core-core repulsion = 18203.642709 eV Total energy + Delta-G solvation = -3147.323692 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.20615 -38.46507 -36.98388 -34.71802 -32.01560 -31.00051 -28.70457 -28.02244 -26.87423 -25.66046 -24.20146 -22.70932 -22.35847 -19.92965 -19.40394 -19.31039 -17.04846 -16.59697 -16.01687 -15.67297 -15.10871 -14.84331 -14.70840 -14.35521 -13.88890 -13.65139 -13.12974 -12.70182 -12.54934 -12.53140 -12.07457 -11.91421 -11.67264 -11.46827 -11.31688 -11.14771 -10.84391 -10.62804 -10.59025 -10.51944 -10.41563 -10.35495 -10.24621 -10.19342 -9.85718 -9.38051 -9.08940 -8.53286 -8.03851 -7.64316 -6.14455 -4.19921 3.28222 3.34701 3.39281 3.75272 4.37220 4.51949 4.58582 4.64873 4.73675 4.82255 5.14002 5.22412 5.32639 5.35227 5.48295 5.50233 5.54588 5.59822 5.64926 5.76273 5.78237 5.80421 5.90706 6.01170 6.06424 6.13567 6.17505 6.27146 6.32692 6.41687 6.48892 6.58228 7.00411 7.13918 7.37102 7.40567 7.59028 7.75405 7.82123 7.92697 8.22972 8.81667 9.46833 9.58325 10.93327 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021199 B = 0.004331 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.480309 B = 6462.944464 C = 7287.526889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.062 0.938 9 C 0.243 3.757 10 O -0.596 6.596 11 C -0.117 4.117 12 C 0.033 3.967 13 N -0.503 5.503 14 C 0.047 3.953 15 C 0.066 3.934 16 O -0.366 6.366 17 C 0.070 3.930 18 C -0.106 4.106 19 C -0.132 4.132 20 C -0.144 4.144 21 C -0.134 4.134 22 C 0.053 3.947 23 H 0.266 0.734 24 H 0.383 0.617 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.029 0.971 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.041 0.959 34 H 0.045 0.955 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.034 0.966 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.161 -13.364 -10.563 17.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.564 4.564 8 H 0.080 0.920 9 C 0.203 3.797 10 O -0.406 6.406 11 C -0.156 4.156 12 C -0.095 4.095 13 N -0.227 5.227 14 C -0.081 4.081 15 C -0.011 4.011 16 O -0.284 6.284 17 C -0.007 4.007 18 C -0.125 4.125 19 C -0.169 4.169 20 C -0.181 4.181 21 C -0.171 4.171 22 C -0.075 4.075 23 H 0.076 0.924 24 H 0.235 0.765 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.052 0.948 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.889 -13.499 -10.828 17.544 hybrid contribution -0.731 0.904 0.478 1.257 sum 2.158 -12.595 -10.349 16.444 Atomic orbital electron populations 1.69627 1.05948 1.27307 1.51329 1.25010 0.94991 0.99429 0.93956 0.86460 0.79852 0.82720 0.78169 1.20542 1.21200 1.19798 1.21727 0.93582 0.90652 1.50484 0.91963 1.19356 0.86233 0.91611 0.82523 1.86078 1.52006 1.53913 1.48585 1.22958 1.00582 0.91608 1.00422 1.23272 0.88522 0.98807 0.98901 1.64849 1.23108 1.04986 1.29804 1.22302 1.01714 0.89908 0.94207 1.22583 0.94505 0.97043 0.86980 1.88050 1.55935 1.67733 1.16710 1.22471 0.97445 0.95359 0.85440 1.22503 1.00444 0.97149 0.92387 1.22954 1.01574 0.97370 0.95046 1.22848 1.01545 0.96455 0.97261 1.22905 1.01794 0.96894 0.95545 1.22895 1.00564 0.95128 0.88865 0.92423 0.76542 0.91907 0.91427 0.91812 0.95275 0.93783 0.90379 0.93273 0.93799 0.94054 0.93701 0.88513 0.90141 0.90956 0.90261 0.91561 0.91480 0.90209 0.94773 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.56 10.88 55.43 0.60 -23.95 16 2 C 0.07 1.82 5.26 -17.82 -0.09 1.73 16 3 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.53 -14.56 8.10 -34.44 -0.28 -14.84 16 8 H 0.06 1.72 7.34 -52.48 -0.39 1.34 16 9 C 0.24 6.24 0.99 -90.42 -0.09 6.15 16 10 O -0.60 -15.94 12.93 -35.23 -0.46 -16.39 16 11 C -0.12 -2.81 5.50 -24.87 -0.14 -2.95 16 12 C 0.03 0.66 5.08 -1.90 -0.01 0.65 16 13 N -0.50 -10.28 5.34 -230.45 -1.23 -11.52 16 14 C 0.05 0.79 5.41 -3.82 -0.02 0.77 16 15 C 0.07 0.95 5.76 37.16 0.21 1.16 16 16 O -0.37 -5.69 10.29 -35.23 -0.36 -6.06 16 17 C 0.07 0.84 5.76 37.16 0.21 1.06 16 18 C -0.11 -1.18 4.00 -89.81 -0.36 -1.54 16 19 C -0.13 -1.49 7.65 -25.83 -0.20 -1.69 16 20 C -0.14 -1.30 8.09 -25.82 -0.21 -1.51 16 21 C -0.13 -1.17 7.65 -25.92 -0.20 -1.37 16 22 C 0.05 1.21 6.17 -2.75 -0.02 1.19 16 23 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 24 H 0.38 10.39 7.05 45.56 0.32 10.71 16 25 H 0.06 1.55 8.06 -51.93 -0.42 1.13 16 26 H 0.07 1.73 7.86 -51.93 -0.41 1.32 16 27 H 0.06 1.22 7.56 -51.93 -0.39 0.82 16 28 H 0.03 0.58 8.01 -51.93 -0.42 0.16 16 29 H 0.04 0.71 7.81 -51.93 -0.41 0.30 16 30 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.05 0.71 6.52 -51.93 -0.34 0.37 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.04 0.53 7.87 -51.93 -0.41 0.12 16 35 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.08 0.92 7.92 -51.93 -0.41 0.51 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 42 H 0.03 0.76 7.39 -51.93 -0.38 0.38 16 43 H 0.08 1.81 7.39 -51.93 -0.38 1.43 16 LS Contribution 338.04 15.07 5.09 5.09 Total: -1.00 -28.73 338.04 -9.52 -38.26 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -6.97 Total: 9.58 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -1.18 Total: -11.18 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: -0.63 Total: -35.47 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.82 Total: -22.45 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.73 -9.52 -38.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592153377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.041 kcal (2) G-P(sol) polarization free energy of solvation -28.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds