Wall clock time and date at job start Mon Mar 30 2020 01:20:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86796 * 120.00558 * 2 1
4 4 H 1.48504 * 109.46967 * 269.99915 * 3 2 1
5 5 H 1.48505 * 109.47161 * 29.99430 * 3 2 1
6 6 H 1.48498 * 109.47614 * 149.99961 * 3 2 1
7 7 C 1.37879 * 119.99367 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99461 * 180.02562 * 7 2 1
9 9 C 1.50701 * 120.00369 * 0.02562 * 7 2 1
10 10 O 1.42900 * 110.27070 * 302.08436 * 9 7 2
11 11 C 1.54592 * 110.31006 * 64.27980 * 9 7 2
12 12 C 1.54941 * 102.91953 * 140.87436 * 11 9 7
13 13 N 1.48528 * 103.22644 * 322.58556 * 12 11 9
14 14 C 1.46905 * 110.99503 * 159.72074 * 13 12 11
15 15 C 1.52997 * 109.47150 * 52.60569 * 14 13 12
16 16 O 1.42898 * 109.47319 * 64.99949 * 15 14 13
17 17 C 1.42902 * 114.00186 * 180.02562 * 16 15 14
18 18 C 1.52995 * 109.47230 * 179.97438 * 17 16 15
19 19 C 1.53781 * 113.61674 * 274.13945 * 18 17 16
20 20 C 1.53958 * 87.02068 * 220.04755 * 19 18 17
21 21 C 1.53782 * 113.61621 * 176.52802 * 18 17 16
22 22 C 1.47903 * 105.82106 * 39.21122 * 13 12 11
23 23 H 0.97008 * 119.99487 * 0.02562 * 1 2 3
24 24 H 0.96702 * 113.99804 * 57.90865 * 10 9 7
25 25 H 1.09003 * 110.72371 * 259.23297 * 11 9 7
26 26 H 1.09000 * 110.72388 * 22.34253 * 11 9 7
27 27 H 1.09004 * 110.66028 * 204.14971 * 12 11 9
28 28 H 1.08997 * 110.66081 * 81.02478 * 12 11 9
29 29 H 1.09001 * 109.47063 * 292.59965 * 14 13 12
30 30 H 1.09004 * 109.46681 * 172.60590 * 14 13 12
31 31 H 1.09002 * 109.47153 * 304.99641 * 15 14 13
32 32 H 1.09001 * 109.46832 * 184.99832 * 15 14 13
33 33 H 1.09001 * 109.46918 * 299.99649 * 17 16 15
34 34 H 1.08999 * 109.46857 * 59.99535 * 17 16 15
35 35 H 1.09000 * 112.84933 * 45.33048 * 18 17 16
36 36 H 1.09005 * 113.61438 * 334.56353 * 19 18 17
37 37 H 1.08994 * 113.62032 * 105.46557 * 19 18 17
38 38 H 1.08995 * 113.53639 * 270.81165 * 20 19 18
39 39 H 1.09000 * 113.74607 * 139.93670 * 20 19 18
40 40 H 1.08996 * 113.61400 * 254.52944 * 21 18 17
41 41 H 1.09004 * 113.60799 * 25.43258 * 21 18 17
42 42 H 1.08990 * 109.92122 * 94.02295 * 22 13 12
43 43 H 1.09002 * 109.91549 * 215.31353 * 22 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2493 1.6176 0.0000
4 1 2.4968 2.0462 -1.4001
5 1 1.4468 2.6527 0.6999
6 1 3.5468 1.4400 0.7000
7 6 2.0044 -1.1941 0.0005
8 1 3.0844 -1.1942 0.0010
9 6 1.2509 -2.4992 0.0005
10 8 0.3862 -2.5717 1.1360
11 6 0.4382 -2.6496 -1.3059
12 6 0.6030 -4.1523 -1.6454
13 7 2.0061 -4.4380 -1.2508
14 6 2.2119 -5.8777 -1.0434
15 6 1.7303 -6.6445 -2.2767
16 8 2.5471 -6.3036 -3.3985
17 6 2.1794 -6.9686 -4.6087
18 6 3.1156 -6.5299 -5.7365
19 6 2.6690 -5.2376 -6.4402
20 6 3.1006 -5.9024 -7.7601
21 6 2.8574 -7.2542 -7.0683
22 6 2.2342 -3.6843 0.0012
23 1 -0.4850 0.8402 -0.0004
24 1 -0.2554 -1.8501 1.1884
25 1 -0.6107 -2.4048 -1.1381
26 1 0.8571 -2.0249 -2.0948
27 1 0.4610 -4.3234 -2.7126
28 1 -0.0915 -4.7568 -1.0621
29 1 1.6473 -6.2033 -0.1697
30 1 3.2723 -6.0739 -0.8846
31 1 0.6943 -6.3795 -2.4876
32 1 1.8003 -7.7159 -2.0885
33 1 2.2583 -8.0468 -4.4693
34 1 1.1527 -6.7100 -4.8679
35 1 4.1640 -6.5248 -5.4384
36 1 1.5968 -5.0528 -6.3747
37 1 3.2668 -4.3661 -6.1734
38 1 4.1450 -5.7245 -8.0159
39 1 2.4223 -5.7091 -8.5912
40 1 3.6071 -8.0083 -7.3078
41 1 1.8367 -7.6217 -7.1746
42 1 2.0422 -4.3258 0.8611
43 1 3.2597 -3.3158 0.0312
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000592153377.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:20:12
Heat of formation + Delta-G solvation = -96.151942 kcal
Electronic energy + Delta-G solvation = -21351.827329 eV
Core-core repulsion = 18203.642709 eV
Total energy + Delta-G solvation = -3148.184619 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 269.178 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-40.36867 -39.84878 -38.19458 -36.50606 -34.12836 -32.55353 -30.12276 -29.62970
-28.30752 -26.45330 -26.09740 -23.83320 -23.54394 -21.47831 -21.26232 -20.23004
-19.12209 -17.69130 -17.24362 -16.89733 -16.80398 -16.27788 -16.06379 -15.82721
-15.59345 -15.06056 -14.37081 -14.28034 -13.95330 -13.73027 -13.35707 -13.31162
-13.29982 -12.97077 -12.76203 -12.66566 -12.44068 -12.36659 -12.26528 -12.03039
-11.92100 -11.74837 -11.40027 -11.18021 -11.11337 -11.05481 -10.60841 -10.41137
-10.08872 -9.25636 -8.21688 -6.35116 1.40600 1.41932 1.52154 2.39604
2.75049 2.98782 3.16881 3.72590 3.80707 3.84032 3.93461 3.99967
4.08790 4.22325 4.29922 4.36815 4.38662 4.46161 4.50864 4.56771
4.64843 4.65564 4.71453 4.83895 4.86930 4.89320 4.92533 5.00560
5.10183 5.10649 5.16737 5.24771 5.37929 5.41716 5.59590 5.61708
5.76843 6.00663 6.15312 6.22948 6.45925 6.68873 7.34799 7.44825
8.84537
Molecular weight = 269.18amu
Principal moments of inertia in cm(-1)
A = 0.021199 B = 0.004331 C = 0.003841
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1320.480309 B = 6462.944464 C = 7287.526889
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.915 5.915
2 C 0.028 3.972
3 Si 0.960 3.040
4 H -0.276 1.276
5 H -0.278 1.278
6 H -0.273 1.273
7 C -0.556 4.556
8 H 0.052 0.948
9 C 0.227 3.773
10 O -0.601 6.601
11 C -0.110 4.110
12 C 0.048 3.952
13 N -0.512 5.512
14 C 0.044 3.956
15 C 0.069 3.931
16 O -0.395 6.395
17 C 0.067 3.933
18 C -0.113 4.113
19 C -0.144 4.144
20 C -0.137 4.137
21 C -0.121 4.121
22 C 0.061 3.939
23 H 0.269 0.731
24 H 0.378 0.622
25 H 0.049 0.951
26 H 0.043 0.957
27 H 0.079 0.921
28 H 0.040 0.960
29 H 0.054 0.946
30 H 0.082 0.918
31 H 0.049 0.951
32 H 0.075 0.925
33 H 0.061 0.939
34 H 0.047 0.953
35 H 0.087 0.913
36 H 0.076 0.924
37 H 0.051 0.949
38 H 0.083 0.917
39 H 0.076 0.924
40 H 0.080 0.920
41 H 0.090 0.910
42 H 0.037 0.963
43 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.297 -14.719 -11.558 18.855
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.556 5.556
2 C -0.172 4.172
3 Si 0.786 3.214
4 H -0.202 1.202
5 H -0.203 1.203
6 H -0.197 1.197
7 C -0.594 4.594
8 H 0.070 0.930
9 C 0.187 3.813
10 O -0.411 6.411
11 C -0.149 4.149
12 C -0.080 4.080
13 N -0.237 5.237
14 C -0.084 4.084
15 C -0.008 4.008
16 O -0.314 6.314
17 C -0.010 4.010
18 C -0.131 4.131
19 C -0.182 4.182
20 C -0.175 4.175
21 C -0.158 4.158
22 C -0.067 4.067
23 H 0.079 0.921
24 H 0.228 0.772
25 H 0.068 0.932
26 H 0.062 0.938
27 H 0.097 0.903
28 H 0.058 0.942
29 H 0.072 0.928
30 H 0.101 0.899
31 H 0.067 0.933
32 H 0.093 0.907
33 H 0.079 0.921
34 H 0.066 0.934
35 H 0.105 0.895
36 H 0.094 0.906
37 H 0.070 0.930
38 H 0.102 0.898
39 H 0.095 0.905
40 H 0.099 0.901
41 H 0.109 0.891
42 H 0.055 0.945
43 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 3.024 -14.874 -11.828 19.243
hybrid contribution -0.773 1.324 0.790 1.725
sum 2.251 -13.550 -11.038 17.621
Atomic orbital electron populations
1.69700 1.06788 1.28151 1.50939 1.25693 0.95872 1.02259 0.93376
0.85528 0.78666 0.79030 0.78210 1.20158 1.20340 1.19748 1.21976
0.93410 0.92264 1.51763 0.92969 1.19596 0.86726 0.92239 0.82713
1.86067 1.52039 1.53602 1.49371 1.22738 0.99132 0.94015 0.98968
1.23126 0.88881 0.96046 0.99926 1.64808 1.22965 1.07509 1.28468
1.22426 1.02380 0.87517 0.96060 1.22566 0.94043 0.98332 0.85810
1.88012 1.56598 1.68864 1.17945 1.22646 0.97712 0.96242 0.84366
1.22559 0.99740 0.97552 0.93255 1.23011 1.00998 0.97012 0.97150
1.22837 1.02032 0.96182 0.96402 1.22865 1.02849 0.96813 0.93274
1.22711 0.99189 0.94552 0.90252 0.92118 0.77159 0.93240 0.93827
0.90311 0.94217 0.92758 0.89949 0.93276 0.90661 0.92118 0.93428
0.89479 0.90579 0.93030 0.89790 0.90521 0.90083 0.89149 0.94460
0.91315
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -50.29 10.88 21.45 0.23 -50.05 16
2 C 0.03 1.52 5.26 84.66 0.45 1.96 16
3 Si 0.96 43.61 29.54 68.60 2.03 45.64 16
4 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16
5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16
6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16
7 C -0.56 -31.34 8.10 25.60 0.21 -31.13 16
8 H 0.05 2.96 7.34 -2.91 -0.02 2.94 16
9 C 0.23 11.83 0.99 -10.66 -0.01 11.81 16
10 O -0.60 -32.57 12.93 -148.98 -1.93 -34.50 16
11 C -0.11 -5.34 5.50 31.80 0.17 -5.17 16
12 C 0.05 1.91 5.08 86.65 0.44 2.35 16
13 N -0.51 -20.58 5.34 -883.01 -4.72 -25.30 16
14 C 0.04 1.39 5.41 86.30 0.47 1.85 16
15 C 0.07 1.82 5.76 71.98 0.41 2.23 16
16 O -0.39 -11.63 10.29 -148.98 -1.53 -13.16 16
17 C 0.07 1.47 5.76 71.98 0.41 1.89 16
18 C -0.11 -2.34 4.00 -10.27 -0.04 -2.38 16
19 C -0.14 -3.19 7.65 31.18 0.24 -2.95 16
20 C -0.14 -2.24 8.09 31.18 0.25 -1.99 16
21 C -0.12 -1.80 7.65 31.12 0.24 -1.56 16
22 C 0.06 2.78 6.17 86.45 0.53 3.32 16
23 H 0.27 14.03 8.31 -92.70 -0.77 13.26 16
24 H 0.38 20.90 7.05 -74.06 -0.52 20.38 16
25 H 0.05 2.49 8.06 -2.39 -0.02 2.47 16
26 H 0.04 2.28 7.86 -2.39 -0.02 2.26 16
27 H 0.08 2.91 7.56 -2.38 -0.02 2.89 16
28 H 0.04 1.51 8.01 -2.39 -0.02 1.49 16
29 H 0.05 1.61 7.81 -2.39 -0.02 1.59 16
30 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16
31 H 0.05 1.29 6.52 -2.39 -0.02 1.27 16
32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16
33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16
34 H 0.05 1.02 7.87 -2.39 -0.02 1.00 16
35 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16
36 H 0.08 1.71 7.92 -2.38 -0.02 1.70 16
37 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16
38 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16
39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16
40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16
41 H 0.09 1.18 8.10 -2.38 -0.02 1.16 16
42 H 0.04 1.65 7.39 -2.39 -0.02 1.63 16
43 H 0.07 3.23 7.39 -2.39 -0.02 3.21 16
Total: -1.00 -61.23 338.04 -1.69 -62.93
By element:
Atomic # 1 Polarization: 33.77 SS G_CDS: 0.45 Total: 34.22 kcal
Atomic # 6 Polarization: -23.55 SS G_CDS: 3.77 Total: -19.77 kcal
Atomic # 7 Polarization: -70.87 SS G_CDS: -4.49 Total: -75.36 kcal
Atomic # 8 Polarization: -44.20 SS G_CDS: -3.46 Total: -47.66 kcal
Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal
Total: -61.23 -1.69 -62.93 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000592153377.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -33.224 kcal
(2) G-P(sol) polarization free energy of solvation -61.233 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.457 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.695 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.928 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.152 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds