Wall clock time and date at job start Mon Mar 30 2020 01:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00558 * 2 1 4 4 H 1.48504 * 109.46967 * 269.99915 * 3 2 1 5 5 H 1.48505 * 109.47161 * 29.99430 * 3 2 1 6 6 H 1.48498 * 109.47614 * 149.99961 * 3 2 1 7 7 C 1.37879 * 119.99367 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99461 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00369 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.27070 * 302.08436 * 9 7 2 11 11 C 1.54592 * 110.31006 * 64.27980 * 9 7 2 12 12 C 1.54941 * 102.91953 * 140.87436 * 11 9 7 13 13 N 1.48528 * 103.22644 * 322.58556 * 12 11 9 14 14 C 1.46905 * 110.99503 * 159.72074 * 13 12 11 15 15 C 1.52997 * 109.47150 * 52.60569 * 14 13 12 16 16 O 1.42898 * 109.47319 * 64.99949 * 15 14 13 17 17 C 1.42902 * 114.00186 * 180.02562 * 16 15 14 18 18 C 1.52995 * 109.47230 * 179.97438 * 17 16 15 19 19 C 1.53781 * 113.61674 * 274.13945 * 18 17 16 20 20 C 1.53958 * 87.02068 * 220.04755 * 19 18 17 21 21 C 1.53782 * 113.61621 * 176.52802 * 18 17 16 22 22 C 1.47903 * 105.82106 * 39.21122 * 13 12 11 23 23 H 0.97008 * 119.99487 * 0.02562 * 1 2 3 24 24 H 0.96702 * 113.99804 * 57.90865 * 10 9 7 25 25 H 1.09003 * 110.72371 * 259.23297 * 11 9 7 26 26 H 1.09000 * 110.72388 * 22.34253 * 11 9 7 27 27 H 1.09004 * 110.66028 * 204.14971 * 12 11 9 28 28 H 1.08997 * 110.66081 * 81.02478 * 12 11 9 29 29 H 1.09001 * 109.47063 * 292.59965 * 14 13 12 30 30 H 1.09004 * 109.46681 * 172.60590 * 14 13 12 31 31 H 1.09002 * 109.47153 * 304.99641 * 15 14 13 32 32 H 1.09001 * 109.46832 * 184.99832 * 15 14 13 33 33 H 1.09001 * 109.46918 * 299.99649 * 17 16 15 34 34 H 1.08999 * 109.46857 * 59.99535 * 17 16 15 35 35 H 1.09000 * 112.84933 * 45.33048 * 18 17 16 36 36 H 1.09005 * 113.61438 * 334.56353 * 19 18 17 37 37 H 1.08994 * 113.62032 * 105.46557 * 19 18 17 38 38 H 1.08995 * 113.53639 * 270.81165 * 20 19 18 39 39 H 1.09000 * 113.74607 * 139.93670 * 20 19 18 40 40 H 1.08996 * 113.61400 * 254.52944 * 21 18 17 41 41 H 1.09004 * 113.60799 * 25.43258 * 21 18 17 42 42 H 1.08990 * 109.92122 * 94.02295 * 22 13 12 43 43 H 1.09002 * 109.91549 * 215.31353 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4468 2.6527 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.3862 -2.5717 1.1360 11 6 0.4382 -2.6496 -1.3059 12 6 0.6030 -4.1523 -1.6454 13 7 2.0061 -4.4380 -1.2508 14 6 2.2119 -5.8777 -1.0434 15 6 1.7303 -6.6445 -2.2767 16 8 2.5471 -6.3036 -3.3985 17 6 2.1794 -6.9686 -4.6087 18 6 3.1156 -6.5299 -5.7365 19 6 2.6690 -5.2376 -6.4402 20 6 3.1006 -5.9024 -7.7601 21 6 2.8574 -7.2542 -7.0683 22 6 2.2342 -3.6843 0.0012 23 1 -0.4850 0.8402 -0.0004 24 1 -0.2554 -1.8501 1.1884 25 1 -0.6107 -2.4048 -1.1381 26 1 0.8571 -2.0249 -2.0948 27 1 0.4610 -4.3234 -2.7126 28 1 -0.0915 -4.7568 -1.0621 29 1 1.6473 -6.2033 -0.1697 30 1 3.2723 -6.0739 -0.8846 31 1 0.6943 -6.3795 -2.4876 32 1 1.8003 -7.7159 -2.0885 33 1 2.2583 -8.0468 -4.4693 34 1 1.1527 -6.7100 -4.8679 35 1 4.1640 -6.5248 -5.4384 36 1 1.5968 -5.0528 -6.3747 37 1 3.2668 -4.3661 -6.1734 38 1 4.1450 -5.7245 -8.0159 39 1 2.4223 -5.7091 -8.5912 40 1 3.6071 -8.0083 -7.3078 41 1 1.8367 -7.6217 -7.1746 42 1 2.0422 -4.3258 0.8611 43 1 3.2597 -3.3158 0.0312 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592153377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:12 Heat of formation + Delta-G solvation = -96.151942 kcal Electronic energy + Delta-G solvation = -21351.827329 eV Core-core repulsion = 18203.642709 eV Total energy + Delta-G solvation = -3148.184619 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.36867 -39.84878 -38.19458 -36.50606 -34.12836 -32.55353 -30.12276 -29.62970 -28.30752 -26.45330 -26.09740 -23.83320 -23.54394 -21.47831 -21.26232 -20.23004 -19.12209 -17.69130 -17.24362 -16.89733 -16.80398 -16.27788 -16.06379 -15.82721 -15.59345 -15.06056 -14.37081 -14.28034 -13.95330 -13.73027 -13.35707 -13.31162 -13.29982 -12.97077 -12.76203 -12.66566 -12.44068 -12.36659 -12.26528 -12.03039 -11.92100 -11.74837 -11.40027 -11.18021 -11.11337 -11.05481 -10.60841 -10.41137 -10.08872 -9.25636 -8.21688 -6.35116 1.40600 1.41932 1.52154 2.39604 2.75049 2.98782 3.16881 3.72590 3.80707 3.84032 3.93461 3.99967 4.08790 4.22325 4.29922 4.36815 4.38662 4.46161 4.50864 4.56771 4.64843 4.65564 4.71453 4.83895 4.86930 4.89320 4.92533 5.00560 5.10183 5.10649 5.16737 5.24771 5.37929 5.41716 5.59590 5.61708 5.76843 6.00663 6.15312 6.22948 6.45925 6.68873 7.34799 7.44825 8.84537 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021199 B = 0.004331 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.480309 B = 6462.944464 C = 7287.526889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.028 3.972 3 Si 0.960 3.040 4 H -0.276 1.276 5 H -0.278 1.278 6 H -0.273 1.273 7 C -0.556 4.556 8 H 0.052 0.948 9 C 0.227 3.773 10 O -0.601 6.601 11 C -0.110 4.110 12 C 0.048 3.952 13 N -0.512 5.512 14 C 0.044 3.956 15 C 0.069 3.931 16 O -0.395 6.395 17 C 0.067 3.933 18 C -0.113 4.113 19 C -0.144 4.144 20 C -0.137 4.137 21 C -0.121 4.121 22 C 0.061 3.939 23 H 0.269 0.731 24 H 0.378 0.622 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.079 0.921 28 H 0.040 0.960 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.047 0.953 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.051 0.949 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.037 0.963 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.297 -14.719 -11.558 18.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.172 4.172 3 Si 0.786 3.214 4 H -0.202 1.202 5 H -0.203 1.203 6 H -0.197 1.197 7 C -0.594 4.594 8 H 0.070 0.930 9 C 0.187 3.813 10 O -0.411 6.411 11 C -0.149 4.149 12 C -0.080 4.080 13 N -0.237 5.237 14 C -0.084 4.084 15 C -0.008 4.008 16 O -0.314 6.314 17 C -0.010 4.010 18 C -0.131 4.131 19 C -0.182 4.182 20 C -0.175 4.175 21 C -0.158 4.158 22 C -0.067 4.067 23 H 0.079 0.921 24 H 0.228 0.772 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.055 0.945 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.024 -14.874 -11.828 19.243 hybrid contribution -0.773 1.324 0.790 1.725 sum 2.251 -13.550 -11.038 17.621 Atomic orbital electron populations 1.69700 1.06788 1.28151 1.50939 1.25693 0.95872 1.02259 0.93376 0.85528 0.78666 0.79030 0.78210 1.20158 1.20340 1.19748 1.21976 0.93410 0.92264 1.51763 0.92969 1.19596 0.86726 0.92239 0.82713 1.86067 1.52039 1.53602 1.49371 1.22738 0.99132 0.94015 0.98968 1.23126 0.88881 0.96046 0.99926 1.64808 1.22965 1.07509 1.28468 1.22426 1.02380 0.87517 0.96060 1.22566 0.94043 0.98332 0.85810 1.88012 1.56598 1.68864 1.17945 1.22646 0.97712 0.96242 0.84366 1.22559 0.99740 0.97552 0.93255 1.23011 1.00998 0.97012 0.97150 1.22837 1.02032 0.96182 0.96402 1.22865 1.02849 0.96813 0.93274 1.22711 0.99189 0.94552 0.90252 0.92118 0.77159 0.93240 0.93827 0.90311 0.94217 0.92758 0.89949 0.93276 0.90661 0.92118 0.93428 0.89479 0.90579 0.93030 0.89790 0.90521 0.90083 0.89149 0.94460 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.29 10.88 21.45 0.23 -50.05 16 2 C 0.03 1.52 5.26 84.66 0.45 1.96 16 3 Si 0.96 43.61 29.54 68.60 2.03 45.64 16 4 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.56 -31.34 8.10 25.60 0.21 -31.13 16 8 H 0.05 2.96 7.34 -2.91 -0.02 2.94 16 9 C 0.23 11.83 0.99 -10.66 -0.01 11.81 16 10 O -0.60 -32.57 12.93 -148.98 -1.93 -34.50 16 11 C -0.11 -5.34 5.50 31.80 0.17 -5.17 16 12 C 0.05 1.91 5.08 86.65 0.44 2.35 16 13 N -0.51 -20.58 5.34 -883.01 -4.72 -25.30 16 14 C 0.04 1.39 5.41 86.30 0.47 1.85 16 15 C 0.07 1.82 5.76 71.98 0.41 2.23 16 16 O -0.39 -11.63 10.29 -148.98 -1.53 -13.16 16 17 C 0.07 1.47 5.76 71.98 0.41 1.89 16 18 C -0.11 -2.34 4.00 -10.27 -0.04 -2.38 16 19 C -0.14 -3.19 7.65 31.18 0.24 -2.95 16 20 C -0.14 -2.24 8.09 31.18 0.25 -1.99 16 21 C -0.12 -1.80 7.65 31.12 0.24 -1.56 16 22 C 0.06 2.78 6.17 86.45 0.53 3.32 16 23 H 0.27 14.03 8.31 -92.70 -0.77 13.26 16 24 H 0.38 20.90 7.05 -74.06 -0.52 20.38 16 25 H 0.05 2.49 8.06 -2.39 -0.02 2.47 16 26 H 0.04 2.28 7.86 -2.39 -0.02 2.26 16 27 H 0.08 2.91 7.56 -2.38 -0.02 2.89 16 28 H 0.04 1.51 8.01 -2.39 -0.02 1.49 16 29 H 0.05 1.61 7.81 -2.39 -0.02 1.59 16 30 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.05 1.29 6.52 -2.39 -0.02 1.27 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.05 1.02 7.87 -2.39 -0.02 1.00 16 35 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.08 1.71 7.92 -2.38 -0.02 1.70 16 37 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.09 1.18 8.10 -2.38 -0.02 1.16 16 42 H 0.04 1.65 7.39 -2.39 -0.02 1.63 16 43 H 0.07 3.23 7.39 -2.39 -0.02 3.21 16 Total: -1.00 -61.23 338.04 -1.69 -62.93 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: 0.45 Total: 34.22 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: 3.77 Total: -19.77 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -4.49 Total: -75.36 kcal Atomic # 8 Polarization: -44.20 SS G_CDS: -3.46 Total: -47.66 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -61.23 -1.69 -62.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592153377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.224 kcal (2) G-P(sol) polarization free energy of solvation -61.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds