Wall clock time and date at job start Mon Mar 30 2020 01:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00109 * 2 1 4 4 H 1.48499 * 109.47203 * 239.99442 * 3 2 1 5 5 H 1.48505 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46964 * 119.99858 * 3 2 1 7 7 C 1.37881 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99957 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99680 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.53199 * 300.08966 * 9 7 2 11 11 C 1.53110 * 109.50471 * 60.19572 * 9 7 2 12 12 C 1.53120 * 109.16254 * 177.59325 * 11 9 7 13 13 C 1.53038 * 109.27639 * 302.34660 * 12 11 9 14 14 N 1.46842 * 109.52851 * 59.17424 * 13 12 11 15 15 C 1.46898 * 111.00354 * 174.16238 * 14 13 12 16 16 C 1.53002 * 109.46863 * 285.96563 * 15 14 13 17 17 O 1.42899 * 109.54115 * 65.92083 * 16 15 14 18 18 C 1.53179 * 109.61303 * 186.13846 * 16 15 14 19 19 C 1.53093 * 109.16009 * 176.89332 * 18 16 15 20 20 O 1.42900 * 109.41823 * 302.39040 * 19 18 16 21 21 C 1.42908 * 114.09690 * 61.15899 * 20 19 18 22 22 C 1.53100 * 109.41612 * 298.84631 * 21 20 19 23 23 C 1.46852 * 111.19819 * 298.26136 * 14 13 12 24 24 H 0.97001 * 119.99718 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.52529 * 297.49625 * 11 9 7 26 26 H 1.08999 * 109.52691 * 57.62501 * 11 9 7 27 27 H 1.09005 * 109.50374 * 62.27852 * 12 11 9 28 28 H 1.08998 * 109.50789 * 182.35942 * 12 11 9 29 29 H 1.09000 * 109.45808 * 299.15507 * 13 12 11 30 30 H 1.09005 * 109.46187 * 179.19364 * 13 12 11 31 31 H 1.08995 * 109.47197 * 165.97130 * 15 14 13 32 32 H 1.08998 * 109.46941 * 45.96445 * 15 14 13 33 33 H 0.96699 * 114.00049 * 179.81826 * 17 16 15 34 34 H 1.09001 * 109.52759 * 296.79883 * 18 16 15 35 35 H 1.08997 * 109.52057 * 56.99489 * 18 16 15 36 36 H 1.08998 * 109.48130 * 182.41285 * 19 18 16 37 37 H 1.09001 * 109.48528 * 62.37471 * 19 18 16 38 38 H 1.08995 * 109.48521 * 178.86077 * 21 20 19 39 39 H 1.08998 * 109.48920 * 58.83048 * 21 20 19 40 40 H 1.08999 * 109.51884 * 297.70038 * 22 21 20 41 41 H 1.08996 * 109.57507 * 177.54558 * 22 21 20 42 42 H 1.08995 * 109.46043 * 181.75200 * 23 14 13 43 43 H 1.09000 * 109.45769 * 301.73491 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6223 -2.5570 0.8891 11 6 0.3746 -2.5834 -1.2521 12 6 -0.3411 -3.9369 -1.2747 13 6 0.6988 -5.0590 -1.2371 14 7 1.5111 -4.9348 -0.0202 15 6 2.4281 -6.0739 0.1192 16 6 1.6398 -7.3140 0.5455 17 8 0.7483 -7.6975 -0.5033 18 6 2.6089 -8.4632 0.8401 19 6 1.8158 -9.6736 1.3397 20 8 1.0680 -9.3055 2.5004 21 6 0.1122 -8.2676 2.2738 22 6 0.8368 -7.0005 1.8116 23 6 2.2448 -3.6629 0.0011 24 1 -0.4850 0.8401 -0.0004 25 1 -0.3634 -1.7814 -1.2350 26 1 0.9984 -2.4854 -2.1405 27 1 -0.9948 -4.0174 -0.4062 28 1 -0.9342 -4.0198 -2.1855 29 1 1.3434 -4.9861 -2.1131 30 1 0.1920 -6.0241 -1.2387 31 1 3.1804 -5.8446 0.8739 32 1 2.9178 -6.2651 -0.8356 33 1 0.2175 -8.4803 -0.3018 34 1 3.1454 -8.7298 -0.0705 35 1 3.3201 -8.1527 1.6054 36 1 2.5041 -10.4804 1.5916 37 1 1.1332 -10.0086 0.5587 38 1 -0.4266 -8.0613 3.1985 39 1 -0.5928 -8.5839 1.5051 40 1 1.5124 -6.6605 2.5966 41 1 0.1068 -6.2204 1.5962 42 1 2.8608 -3.6140 0.8989 43 1 2.8821 -3.5966 -0.8808 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595619696.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:38 Heat of formation + Delta-G solvation = -104.350685 kcal Electronic energy + Delta-G solvation = -22226.363486 eV Core-core repulsion = 19077.823343 eV Total energy + Delta-G solvation = -3148.540143 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.26179 -38.01846 -36.28996 -33.67070 -32.38670 -31.31126 -30.98546 -29.75261 -27.01375 -24.85698 -23.74606 -23.26440 -21.59367 -21.12639 -19.73367 -18.50019 -17.46516 -16.40040 -16.13792 -15.75501 -15.30869 -14.82730 -14.61403 -14.45983 -14.01003 -13.87579 -13.15596 -13.00109 -12.57591 -12.47201 -12.10542 -12.01914 -11.85443 -11.73357 -11.48775 -11.33059 -11.11505 -10.89882 -10.67127 -10.58077 -10.41565 -10.02319 -9.77848 -9.72573 -9.59715 -9.38415 -8.86284 -8.64902 -8.25279 -7.57128 -5.93904 -4.00118 3.33943 3.38605 3.41002 3.71729 4.19240 4.32441 4.49602 4.67980 4.77686 4.84905 4.93073 5.06946 5.18052 5.35978 5.49531 5.51769 5.60144 5.66768 5.80351 5.87635 5.94007 5.97925 6.09006 6.17491 6.26972 6.42930 6.46874 6.50581 6.64821 6.83559 6.92193 7.03396 7.04914 7.29521 7.47008 7.61673 7.77418 7.81019 7.90814 8.13407 8.22651 8.52759 9.03809 9.63845 11.11904 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.035697 B = 0.004370 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.198671 B = 6406.506312 C = 6551.157449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.052 0.948 9 C 0.057 3.943 10 H 0.033 0.967 11 C -0.111 4.111 12 C -0.117 4.117 13 C 0.055 3.945 14 N -0.531 5.531 15 C 0.070 3.930 16 C 0.140 3.860 17 O -0.547 6.547 18 C -0.183 4.183 19 C 0.060 3.940 20 O -0.386 6.386 21 C 0.054 3.946 22 C -0.168 4.168 23 C 0.066 3.934 24 H 0.260 0.740 25 H 0.088 0.912 26 H 0.027 0.973 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.014 0.986 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.034 0.966 33 H 0.360 0.640 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.049 0.951 38 H 0.096 0.904 39 H 0.048 0.952 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.056 0.944 43 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.340 -17.739 1.239 17.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.070 0.930 9 C 0.038 3.962 10 H 0.051 0.949 11 C -0.149 4.149 12 C -0.154 4.154 13 C -0.072 4.072 14 N -0.255 5.255 15 C -0.059 4.059 16 C 0.099 3.901 17 O -0.354 6.354 18 C -0.221 4.221 19 C -0.017 4.017 20 O -0.304 6.304 21 C -0.023 4.023 22 C -0.206 4.206 23 C -0.061 4.061 24 H 0.069 0.931 25 H 0.107 0.893 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.032 0.968 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.208 0.792 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.067 0.933 38 H 0.114 0.886 39 H 0.066 0.934 40 H 0.095 0.905 41 H 0.119 0.881 42 H 0.074 0.926 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 1.163 -17.163 1.529 17.270 hybrid contribution 0.898 0.652 -0.756 1.343 sum 2.062 -16.511 0.773 16.657 Atomic orbital electron populations 1.69890 1.05823 1.26354 1.50642 1.24927 0.94812 0.98875 0.95165 0.86703 0.79625 0.83378 0.78517 1.20428 1.21324 1.20329 1.21129 0.92747 0.90785 1.50757 0.93001 1.18631 0.92572 0.90171 0.94799 0.94881 1.21646 0.99953 0.94916 0.98365 1.21672 0.97370 0.96591 0.99814 1.22332 0.95496 1.00173 0.89191 1.61951 1.23519 1.01529 1.38498 1.22007 0.93910 0.89990 1.00025 1.21272 0.88871 0.92924 0.86999 1.86663 1.56457 1.49507 1.42733 1.22862 0.99764 0.96891 1.02598 1.22543 0.94544 0.96457 0.88168 1.87940 1.53131 1.55477 1.33898 1.22724 0.90572 0.87267 1.01693 1.22676 1.01788 0.98497 0.97612 1.22332 0.96473 0.88851 0.98451 0.93054 0.89345 0.95370 0.92430 0.93869 0.96774 0.89129 0.90221 0.94784 0.79167 0.90308 0.90029 0.88791 0.93330 0.88567 0.93389 0.90452 0.88053 0.92553 0.96539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.59 11.36 55.43 0.63 -24.96 16 2 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.29 8.56 -34.44 -0.29 -14.59 16 8 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 9 C 0.06 1.45 2.26 -91.69 -0.21 1.24 16 10 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 11 C -0.11 -2.69 5.03 -26.61 -0.13 -2.83 16 12 C -0.12 -2.37 6.09 -26.65 -0.16 -2.54 16 13 C 0.06 1.03 5.19 -3.84 -0.02 1.01 16 14 N -0.53 -9.81 3.66 -234.67 -0.86 -10.67 16 15 C 0.07 1.06 4.35 -3.82 -0.02 1.04 16 16 C 0.14 1.75 0.86 -90.44 -0.08 1.67 16 17 O -0.55 -6.84 9.91 -35.23 -0.35 -7.19 16 18 C -0.18 -1.85 5.15 -26.59 -0.14 -1.99 16 19 C 0.06 0.54 6.59 37.21 0.25 0.79 16 20 O -0.39 -4.38 10.77 -35.23 -0.38 -4.76 16 21 C 0.05 0.57 6.59 37.21 0.25 0.81 16 22 C -0.17 -2.12 4.87 -26.59 -0.13 -2.25 16 23 C 0.07 1.42 4.66 -3.83 -0.02 1.40 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.09 2.39 6.17 -51.93 -0.32 2.07 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 1.57 5.08 -51.93 -0.26 1.30 16 31 H 0.08 1.16 7.83 -51.93 -0.41 0.75 16 32 H 0.03 0.53 8.02 -51.93 -0.42 0.12 16 33 H 0.36 3.38 5.96 45.56 0.27 3.65 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.38 6.92 -51.93 -0.36 0.02 16 38 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.05 0.44 6.93 -51.93 -0.36 0.08 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.10 1.50 7.58 -51.93 -0.39 1.11 16 42 H 0.06 1.19 7.94 -51.93 -0.41 0.78 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 320.10 15.07 4.82 4.82 Total: -1.00 -29.42 320.10 -8.81 -38.23 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -6.85 Total: 2.65 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -0.80 Total: -14.55 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: -0.23 Total: -35.62 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -0.73 Total: -11.95 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.42 -8.81 -38.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595619696.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.122 kcal (2) G-P(sol) polarization free energy of solvation -29.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds