Wall clock time and date at job start Mon Mar 30 2020 01:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00109 * 2 1 4 4 H 1.48499 * 109.47203 * 239.99442 * 3 2 1 5 5 H 1.48505 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46964 * 119.99858 * 3 2 1 7 7 C 1.37881 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99957 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99680 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.53199 * 300.08966 * 9 7 2 11 11 C 1.53110 * 109.50471 * 60.19572 * 9 7 2 12 12 C 1.53120 * 109.16254 * 177.59325 * 11 9 7 13 13 C 1.53038 * 109.27639 * 302.34660 * 12 11 9 14 14 N 1.46842 * 109.52851 * 59.17424 * 13 12 11 15 15 C 1.46898 * 111.00354 * 174.16238 * 14 13 12 16 16 C 1.53002 * 109.46863 * 285.96563 * 15 14 13 17 17 O 1.42899 * 109.54115 * 65.92083 * 16 15 14 18 18 C 1.53179 * 109.61303 * 186.13846 * 16 15 14 19 19 C 1.53093 * 109.16009 * 176.89332 * 18 16 15 20 20 O 1.42900 * 109.41823 * 302.39040 * 19 18 16 21 21 C 1.42908 * 114.09690 * 61.15899 * 20 19 18 22 22 C 1.53100 * 109.41612 * 298.84631 * 21 20 19 23 23 C 1.46852 * 111.19819 * 298.26136 * 14 13 12 24 24 H 0.97001 * 119.99718 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.52529 * 297.49625 * 11 9 7 26 26 H 1.08999 * 109.52691 * 57.62501 * 11 9 7 27 27 H 1.09005 * 109.50374 * 62.27852 * 12 11 9 28 28 H 1.08998 * 109.50789 * 182.35942 * 12 11 9 29 29 H 1.09000 * 109.45808 * 299.15507 * 13 12 11 30 30 H 1.09005 * 109.46187 * 179.19364 * 13 12 11 31 31 H 1.08995 * 109.47197 * 165.97130 * 15 14 13 32 32 H 1.08998 * 109.46941 * 45.96445 * 15 14 13 33 33 H 0.96699 * 114.00049 * 179.81826 * 17 16 15 34 34 H 1.09001 * 109.52759 * 296.79883 * 18 16 15 35 35 H 1.08997 * 109.52057 * 56.99489 * 18 16 15 36 36 H 1.08998 * 109.48130 * 182.41285 * 19 18 16 37 37 H 1.09001 * 109.48528 * 62.37471 * 19 18 16 38 38 H 1.08995 * 109.48521 * 178.86077 * 21 20 19 39 39 H 1.08998 * 109.48920 * 58.83048 * 21 20 19 40 40 H 1.08999 * 109.51884 * 297.70038 * 22 21 20 41 41 H 1.08996 * 109.57507 * 177.54558 * 22 21 20 42 42 H 1.08995 * 109.46043 * 181.75200 * 23 14 13 43 43 H 1.09000 * 109.45769 * 301.73491 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6223 -2.5570 0.8891 11 6 0.3746 -2.5834 -1.2521 12 6 -0.3411 -3.9369 -1.2747 13 6 0.6988 -5.0590 -1.2371 14 7 1.5111 -4.9348 -0.0202 15 6 2.4281 -6.0739 0.1192 16 6 1.6398 -7.3140 0.5455 17 8 0.7483 -7.6975 -0.5033 18 6 2.6089 -8.4632 0.8401 19 6 1.8158 -9.6736 1.3397 20 8 1.0680 -9.3055 2.5004 21 6 0.1122 -8.2676 2.2738 22 6 0.8368 -7.0005 1.8116 23 6 2.2448 -3.6629 0.0011 24 1 -0.4850 0.8401 -0.0004 25 1 -0.3634 -1.7814 -1.2350 26 1 0.9984 -2.4854 -2.1405 27 1 -0.9948 -4.0174 -0.4062 28 1 -0.9342 -4.0198 -2.1855 29 1 1.3434 -4.9861 -2.1131 30 1 0.1920 -6.0241 -1.2387 31 1 3.1804 -5.8446 0.8739 32 1 2.9178 -6.2651 -0.8356 33 1 0.2175 -8.4803 -0.3018 34 1 3.1454 -8.7298 -0.0705 35 1 3.3201 -8.1527 1.6054 36 1 2.5041 -10.4804 1.5916 37 1 1.1332 -10.0086 0.5587 38 1 -0.4266 -8.0613 3.1985 39 1 -0.5928 -8.5839 1.5051 40 1 1.5124 -6.6605 2.5966 41 1 0.1068 -6.2204 1.5962 42 1 2.8608 -3.6140 0.8989 43 1 2.8821 -3.5966 -0.8808 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595619696.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:37 Heat of formation + Delta-G solvation = -124.312666 kcal Electronic energy + Delta-G solvation = -22227.229103 eV Core-core repulsion = 19077.823343 eV Total energy + Delta-G solvation = -3149.405760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.23595 -39.51659 -37.35477 -35.42297 -33.86852 -32.46577 -32.03466 -31.62649 -28.23958 -26.88354 -24.72408 -24.44991 -23.27810 -22.58277 -20.73807 -20.32576 -18.44446 -18.35798 -17.00663 -16.85770 -16.58596 -16.42244 -15.78666 -15.63742 -15.41829 -15.13985 -14.83251 -14.47163 -14.37386 -13.94225 -13.47623 -13.20313 -13.13028 -12.84831 -12.82579 -12.65678 -12.55178 -12.42593 -12.40221 -12.22551 -11.70213 -11.69335 -11.42094 -11.25899 -10.98037 -10.67250 -10.55987 -10.42974 -10.26704 -9.09881 -8.07769 -6.22315 1.41013 1.42416 1.50075 2.42523 2.94757 3.06586 3.18858 3.26233 3.75999 3.82969 3.88933 4.06620 4.26122 4.27911 4.31514 4.35207 4.40823 4.53373 4.66981 4.67529 4.75347 4.79927 4.83302 4.84120 4.92989 4.97239 5.00813 5.11602 5.16338 5.20984 5.37326 5.40238 5.44506 5.54544 5.63949 5.97320 6.12613 6.21781 6.27016 6.37632 6.47196 6.82512 6.90218 7.45433 8.96621 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.035697 B = 0.004370 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.198671 B = 6406.506312 C = 6551.157449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.954 3.046 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.539 4.539 8 H 0.050 0.950 9 C 0.056 3.944 10 H -0.002 1.002 11 C -0.103 4.103 12 C -0.109 4.109 13 C 0.064 3.936 14 N -0.534 5.534 15 C 0.066 3.934 16 C 0.147 3.853 17 O -0.558 6.558 18 C -0.175 4.175 19 C 0.057 3.943 20 O -0.400 6.400 21 C 0.059 3.941 22 C -0.164 4.164 23 C 0.079 3.921 24 H 0.260 0.740 25 H 0.057 0.943 26 H 0.017 0.983 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.008 0.992 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.034 0.966 33 H 0.377 0.623 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.918 -19.538 0.993 19.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.184 4.184 3 Si 0.780 3.220 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.578 4.578 8 H 0.068 0.932 9 C 0.037 3.963 10 H 0.016 0.984 11 C -0.142 4.142 12 C -0.147 4.147 13 C -0.063 4.063 14 N -0.257 5.257 15 C -0.062 4.062 16 C 0.106 3.894 17 O -0.368 6.368 18 C -0.214 4.214 19 C -0.019 4.019 20 O -0.319 6.319 21 C -0.018 4.018 22 C -0.203 4.203 23 C -0.049 4.049 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.036 0.964 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.026 0.974 30 H 0.130 0.870 31 H 0.102 0.898 32 H 0.052 0.948 33 H 0.228 0.772 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.130 0.870 37 H 0.085 0.915 38 H 0.119 0.881 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 1.744 -18.991 1.286 19.114 hybrid contribution 0.704 1.190 -0.675 1.539 sum 2.449 -17.801 0.610 17.979 Atomic orbital electron populations 1.70036 1.07184 1.27125 1.51086 1.25719 0.95659 1.02303 0.94714 0.85676 0.78433 0.79125 0.78788 1.19794 1.20845 1.19573 1.21506 0.92943 0.92272 1.51033 0.93150 1.18545 0.92908 0.91229 0.93624 0.98425 1.21462 0.99041 0.96365 0.97297 1.21586 0.97668 0.94942 1.00503 1.22293 0.94911 1.00239 0.88892 1.61906 1.24034 1.01297 1.38509 1.22141 0.93981 0.89818 1.00276 1.21103 0.89193 0.92565 0.86562 1.86561 1.56799 1.50676 1.42720 1.22794 0.99236 0.96276 1.03070 1.22725 0.94939 0.96191 0.88041 1.87933 1.53449 1.55314 1.35237 1.22696 0.90476 0.86117 1.02481 1.22590 1.01145 0.99005 0.97517 1.22018 0.95377 0.89354 0.98107 0.93061 0.92487 0.96413 0.93138 0.91850 0.97381 0.86969 0.89763 0.94792 0.77220 0.89271 0.90283 0.87017 0.91542 0.88125 0.91638 0.91623 0.90561 0.92468 0.97274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.11 11.36 21.45 0.24 -53.86 16 2 C 0.01 0.84 5.30 84.66 0.45 1.29 16 3 Si 0.95 44.38 29.54 68.60 2.03 46.41 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.54 -30.64 8.56 25.60 0.22 -30.42 16 8 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 9 C 0.06 2.93 2.26 -11.49 -0.03 2.90 16 10 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 11 C -0.10 -5.18 5.03 30.67 0.15 -5.02 16 12 C -0.11 -4.44 6.09 30.65 0.19 -4.25 16 13 C 0.06 2.32 5.19 86.33 0.45 2.76 16 14 N -0.53 -19.56 3.66 -896.36 -3.28 -22.84 16 15 C 0.07 1.93 4.35 86.30 0.38 2.30 16 16 C 0.15 3.36 0.86 -10.68 -0.01 3.35 16 17 O -0.56 -12.37 9.91 -148.98 -1.48 -13.84 16 18 C -0.18 -3.07 5.15 30.69 0.16 -2.91 16 19 C 0.06 0.85 6.59 72.01 0.47 1.32 16 20 O -0.40 -8.02 10.77 -148.98 -1.60 -9.62 16 21 C 0.06 1.11 6.59 72.02 0.47 1.59 16 22 C -0.16 -3.96 4.87 30.69 0.15 -3.81 16 23 C 0.08 3.46 4.66 86.33 0.40 3.86 16 24 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 25 H 0.06 3.20 6.17 -2.39 -0.01 3.19 16 26 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 28 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.11 3.64 5.08 -2.38 -0.01 3.63 16 31 H 0.08 2.36 7.83 -2.39 -0.02 2.34 16 32 H 0.03 1.00 8.02 -2.39 -0.02 0.98 16 33 H 0.38 5.72 5.96 -74.06 -0.44 5.28 16 34 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 0.76 6.92 -2.39 -0.02 0.75 16 38 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.07 1.01 6.93 -2.39 -0.02 1.00 16 40 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.08 2.24 7.58 -2.39 -0.02 2.22 16 42 H 0.06 2.45 7.94 -2.39 -0.02 2.43 16 43 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -64.24 320.10 -0.10 -64.33 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.54 Total: 16.47 kcal Atomic # 6 Polarization: -30.50 SS G_CDS: 3.46 Total: -27.05 kcal Atomic # 7 Polarization: -73.67 SS G_CDS: -3.04 Total: -76.70 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -3.08 Total: -23.47 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -64.24 -0.10 -64.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595619696.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.978 kcal (2) G-P(sol) polarization free energy of solvation -64.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds