Wall clock time and date at job start Mon Mar 30 2020 01:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99991 * 2 1 4 4 H 1.48500 * 109.46816 * 269.99851 * 3 2 1 5 5 H 1.48493 * 109.47180 * 29.99446 * 3 2 1 6 6 H 1.48504 * 109.47210 * 149.99749 * 3 2 1 7 7 C 1.37881 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99947 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99644 * 180.02562 * 7 2 1 10 10 O 1.42902 * 109.46795 * 180.02562 * 9 7 2 11 11 C 1.42897 * 113.99789 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46951 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47399 * 65.00142 * 12 11 10 14 14 C 1.48924 * 111.00225 * 184.51580 * 13 12 11 15 15 C 1.54797 * 103.80681 * 200.11037 * 14 13 12 16 16 H 1.09002 * 105.48142 * 272.17420 * 15 14 13 17 17 C 1.49128 * 110.92032 * 156.89396 * 15 14 13 18 18 C 1.51047 * 117.52775 * 239.73982 * 17 15 14 19 19 H 1.08995 * 109.22549 * 206.26968 * 18 17 15 20 20 O 1.42907 * 109.21991 * 86.91863 * 18 17 15 21 21 C 1.52838 * 110.74734 * 326.59811 * 18 17 15 22 22 C 1.52819 * 107.47123 * 63.84670 * 21 18 17 23 23 C 1.51067 * 110.76930 * 295.01071 * 22 21 18 24 24 H 1.09001 * 108.52464 * 273.23646 * 23 22 21 25 25 C 1.48916 * 110.99973 * 69.87276 * 13 12 11 26 26 H 0.97001 * 119.99877 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47181 * 60.00631 * 9 7 2 28 28 H 1.09001 * 109.47176 * 300.00325 * 9 7 2 29 29 H 1.08997 * 109.47401 * 60.00170 * 11 10 9 30 30 H 1.09006 * 109.47437 * 300.00171 * 11 10 9 31 31 H 1.09002 * 109.47458 * 304.99896 * 12 11 10 32 32 H 1.09002 * 109.47132 * 185.00091 * 12 11 10 33 33 H 1.08997 * 110.55867 * 318.68920 * 14 13 12 34 34 H 1.08996 * 110.55428 * 81.53098 * 14 13 12 35 35 H 1.09000 * 107.83661 * 117.70208 * 17 15 14 36 36 H 1.09006 * 107.83590 * 1.77329 * 17 15 14 37 37 H 0.96704 * 113.99596 * 178.74394 * 20 18 17 38 38 H 1.09000 * 109.85313 * 304.35759 * 21 18 17 39 39 H 1.08997 * 109.86062 * 183.34126 * 21 18 17 40 40 H 1.09002 * 109.21803 * 174.67549 * 22 21 18 41 41 H 1.09002 * 109.18397 * 55.31984 * 22 21 18 42 42 H 1.09007 * 110.54771 * 278.39205 * 25 13 12 43 43 H 1.08994 * 110.55026 * 41.20387 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 8 3.9878 -2.5414 0.0010 11 6 5.4123 -2.6542 0.0009 12 6 5.8068 -4.1324 0.0002 13 7 5.3676 -4.7558 -1.2553 14 6 5.6378 -6.2204 -1.2471 15 6 5.6210 -6.6075 -2.7458 16 1 4.5797 -6.8321 -2.9767 17 6 6.3947 -7.8605 -2.9808 18 6 7.5740 -7.7868 -3.9217 19 1 7.7458 -8.7700 -4.3596 20 8 8.7354 -7.3891 -3.1901 21 6 7.3129 -6.7770 -5.0389 22 6 7.1824 -5.3992 -4.3908 23 6 5.9672 -5.3414 -3.4953 24 1 5.1042 -5.0629 -4.1001 25 6 6.1697 -4.2585 -2.4073 26 1 -0.4850 0.8401 -0.0004 27 1 3.8745 -0.6801 0.8911 28 1 3.8752 -0.6804 -0.8888 29 1 5.8152 -2.1707 0.8909 30 1 5.8152 -2.1705 -0.8890 31 1 5.3310 -4.6360 0.8417 32 1 6.8897 -4.2196 0.0897 33 1 6.6143 -6.4270 -0.8094 34 1 4.8544 -6.7510 -0.7060 35 1 5.7053 -8.6110 -3.3678 36 1 6.7590 -8.2138 -2.0161 37 1 9.5391 -7.3382 -3.7255 38 1 6.3890 -7.0307 -5.5587 39 1 8.1463 -6.7783 -5.7414 40 1 7.0899 -4.6432 -5.1706 41 1 8.0746 -5.1961 -3.7984 42 1 5.7905 -3.2958 -2.7503 43 1 7.2224 -4.1813 -2.1355 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595636666.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:20 Heat of formation + Delta-G solvation = -123.947714 kcal Electronic energy + Delta-G solvation = -21321.804192 eV Core-core repulsion = 18172.414258 eV Total energy + Delta-G solvation = -3149.389934 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.25722 -38.97910 -38.01842 -35.47577 -34.78614 -33.11461 -32.12247 -30.29094 -28.68835 -27.87739 -24.57323 -23.94734 -23.23505 -22.63374 -21.71493 -19.32215 -19.02227 -17.79019 -17.59293 -17.34694 -17.07206 -16.46325 -16.05367 -15.63946 -15.49486 -15.29508 -14.75400 -14.60841 -14.23763 -13.97586 -13.61726 -13.55549 -13.43947 -13.10456 -12.98258 -12.63077 -12.59853 -12.48596 -12.03964 -12.00554 -11.82095 -11.74667 -11.61483 -11.32845 -11.02323 -10.97797 -10.92582 -10.57433 -10.32307 -9.36991 -8.37634 -6.45432 1.31654 1.35419 1.46433 2.28928 2.94444 2.97431 3.12830 3.34796 3.54756 3.68934 3.79407 4.03123 4.06784 4.15854 4.22999 4.31772 4.36263 4.43229 4.48934 4.52139 4.59316 4.60656 4.66995 4.70526 4.78759 4.85835 4.89185 4.95237 5.00653 5.01892 5.13188 5.17791 5.28707 5.35441 5.43562 5.44759 5.51573 5.91876 5.96385 6.11412 6.58662 6.79154 7.00512 7.19164 8.79888 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.034276 B = 0.003576 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.707545 B = 7827.940877 C = 7896.808252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.012 3.988 3 Si 0.958 3.042 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.246 1.246 7 C -0.545 4.545 8 H 0.027 0.973 9 C 0.180 3.820 10 O -0.394 6.394 11 C 0.057 3.943 12 C 0.055 3.945 13 N -0.528 5.528 14 C 0.037 3.963 15 C -0.072 4.072 16 H 0.055 0.945 17 C -0.103 4.103 18 C 0.113 3.887 19 H 0.073 0.927 20 O -0.583 6.583 21 C -0.145 4.145 22 C -0.102 4.102 23 C -0.074 4.074 24 H 0.056 0.944 25 C 0.037 3.963 26 H 0.273 0.727 27 H 0.011 0.989 28 H 0.006 0.994 29 H 0.058 0.942 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.389 0.611 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.073 -14.578 -9.975 28.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.170 1.170 7 C -0.582 4.582 8 H 0.045 0.955 9 C 0.104 3.896 10 O -0.314 6.314 11 C -0.020 4.020 12 C -0.074 4.074 13 N -0.252 5.252 14 C -0.091 4.091 15 C -0.091 4.091 16 H 0.074 0.926 17 C -0.141 4.141 18 C 0.054 3.946 19 H 0.091 0.909 20 O -0.392 6.392 21 C -0.183 4.183 22 C -0.140 4.140 23 C -0.093 4.093 24 H 0.075 0.925 25 C -0.091 4.091 26 H 0.082 0.918 27 H 0.029 0.971 28 H 0.024 0.976 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.238 0.762 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 20.747 -14.490 -9.501 27.031 hybrid contribution 0.763 0.836 -0.065 1.134 sum 21.510 -13.654 -9.566 27.214 Atomic orbital electron populations 1.70038 1.08269 1.28789 1.51134 1.25869 0.95840 1.03444 0.93414 0.85577 0.79400 0.77358 0.79796 1.18387 1.19573 1.16964 1.21160 0.91002 0.93778 1.52295 0.95480 1.20289 0.93311 0.81331 0.94696 1.87966 1.20726 1.27590 1.95096 1.22619 0.82434 0.96972 0.99990 1.22231 0.98503 0.93465 0.93157 1.65708 1.51975 1.04362 1.03185 1.23558 0.99747 0.88438 0.97348 1.20330 1.00241 0.94670 0.93896 0.92614 1.20342 0.96301 0.96327 1.01130 1.21339 0.85240 0.96819 0.91189 0.90903 1.86578 1.19710 1.91842 1.41028 1.22127 1.03393 0.95007 0.97756 1.21014 0.96846 0.97989 0.98166 1.20791 0.99106 0.93720 0.95712 0.92497 1.23476 0.95616 0.98487 0.91514 0.91766 0.97122 0.97624 0.92394 0.93770 0.90718 0.91084 0.93173 0.90941 0.89629 0.91530 0.76190 0.90675 0.89427 0.91632 0.91429 0.92076 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.00 13.96 21.45 0.30 -60.70 16 2 C 0.01 0.74 5.47 84.66 0.46 1.20 16 3 Si 0.96 44.68 27.47 68.60 1.88 46.56 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.25 -10.61 6.54 99.48 0.65 -9.95 16 7 C -0.54 -34.76 9.99 25.60 0.26 -34.51 16 8 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 9 C 0.18 9.54 4.76 71.24 0.34 9.87 16 10 O -0.39 -19.79 10.27 -148.98 -1.53 -21.32 16 11 C 0.06 2.09 6.08 71.98 0.44 2.53 16 12 C 0.05 1.70 5.21 86.30 0.45 2.15 16 13 N -0.53 -17.10 5.35 -877.69 -4.70 -21.80 16 14 C 0.04 0.97 5.70 86.52 0.49 1.46 16 15 C -0.07 -1.63 2.80 -12.02 -0.03 -1.66 16 16 H 0.06 1.37 8.06 -2.39 -0.02 1.35 16 17 C -0.10 -1.75 5.20 28.73 0.15 -1.60 16 18 C 0.11 1.49 3.73 29.90 0.11 1.60 16 19 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 20 O -0.58 -8.65 12.12 -148.98 -1.81 -10.46 16 21 C -0.15 -1.80 5.72 30.48 0.17 -1.62 16 22 C -0.10 -1.76 5.27 29.90 0.16 -1.61 16 23 C -0.07 -1.73 2.94 -11.40 -0.03 -1.77 16 24 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 25 C 0.04 1.03 5.22 86.54 0.45 1.48 16 26 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 27 H 0.01 0.56 7.20 -2.39 -0.02 0.54 16 28 H 0.01 0.31 7.57 -2.39 -0.02 0.29 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.04 1.54 7.04 -2.38 -0.02 1.52 16 31 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.07 1.79 7.90 -2.39 -0.02 1.77 16 33 H 0.05 1.24 7.68 -2.39 -0.02 1.22 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 35 H 0.09 1.19 8.11 -2.39 -0.02 1.17 16 36 H 0.07 1.23 7.20 -2.38 -0.02 1.21 16 37 H 0.39 2.55 9.08 -74.05 -0.67 1.88 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.07 1.21 6.62 -2.39 -0.02 1.19 16 42 H 0.06 1.91 7.62 -2.38 -0.02 1.89 16 43 H 0.05 1.34 7.26 -2.39 -0.02 1.33 16 Total: -1.00 -76.35 330.83 -2.19 -78.54 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.25 Total: 11.64 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: 3.42 Total: -22.48 kcal Atomic # 7 Polarization: -78.10 SS G_CDS: -4.40 Total: -82.50 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -3.34 Total: -31.77 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.56 kcal Total: -76.35 -2.19 -78.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595636666.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.406 kcal (2) G-P(sol) polarization free energy of solvation -76.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds