Wall clock time and date at job start Mon Mar 30 2020 00:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31011 * 1 3 3 C 1.50694 * 119.99801 * 2 1 4 4 C 1.53005 * 109.47149 * 125.00262 * 3 2 1 5 5 H 1.08994 * 109.50245 * 54.91786 * 4 3 2 6 6 C 1.53119 * 109.49829 * 294.80085 * 4 3 2 7 7 C 1.53127 * 109.15840 * 182.40099 * 6 4 3 8 8 C 1.53043 * 109.27490 * 57.65809 * 7 6 4 9 9 N 1.46846 * 109.52295 * 300.82080 * 8 7 6 10 10 C 1.46901 * 111.00199 * 185.84303 * 9 8 7 11 11 C 1.52999 * 109.47208 * 45.78471 * 10 9 8 12 12 C 1.52998 * 109.47133 * 180.02562 * 11 10 9 13 13 S 1.81001 * 109.47084 * 180.02562 * 12 11 10 14 14 C 1.76192 * 100.00053 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00436 * 0.02562 * 14 13 12 16 16 C 1.38805 * 119.99929 * 179.97438 * 14 13 12 17 17 N 1.31624 * 120.00253 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99752 * 179.72153 * 16 14 13 19 19 H 1.48506 * 109.46826 * 60.00667 * 18 16 14 20 20 H 1.48497 * 109.47051 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47422 * 300.00475 * 18 16 14 22 22 C 1.46843 * 111.20089 * 61.74133 * 9 8 7 23 23 H 1.07997 * 119.99531 * 179.97438 * 1 2 3 24 24 H 1.07999 * 119.99895 * 359.97438 * 1 2 3 25 25 H 1.07999 * 119.99895 * 180.02562 * 2 1 3 26 26 H 1.09001 * 109.47554 * 5.00272 * 3 2 1 27 27 H 1.08996 * 109.47438 * 245.00125 * 3 2 1 28 28 H 1.08998 * 109.52939 * 302.30827 * 6 4 3 29 29 H 1.09001 * 109.52350 * 62.44029 * 6 4 3 30 30 H 1.09002 * 109.50074 * 177.59620 * 7 6 4 31 31 H 1.08994 * 109.50311 * 297.71552 * 7 6 4 32 32 H 1.09001 * 109.46156 * 180.80275 * 8 7 6 33 33 H 1.09003 * 109.46218 * 60.83294 * 8 7 6 34 34 H 1.09003 * 109.46891 * 285.78896 * 10 9 8 35 35 H 1.08995 * 109.47402 * 165.79344 * 10 9 8 36 36 H 1.09003 * 109.46848 * 60.00399 * 11 10 9 37 37 H 1.09001 * 109.47004 * 300.00594 * 11 10 9 38 38 H 1.08998 * 109.46738 * 60.00665 * 12 11 10 39 39 H 1.08996 * 109.47187 * 299.99805 * 12 11 10 40 40 H 0.97000 * 120.00481 * 179.97438 * 17 16 14 41 41 H 1.09006 * 109.46410 * 58.27319 * 22 9 8 42 42 H 1.08997 * 109.46490 * 178.24207 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 1 3.6821 0.4568 1.1416 6 6 2.2451 1.3268 2.4932 7 6 3.2222 1.4155 3.6689 8 6 4.0698 2.6817 3.5269 9 7 4.8063 2.6394 2.2572 10 6 5.7359 3.7718 2.1497 11 6 6.5031 3.9284 3.4642 12 6 7.4708 5.1082 3.3525 13 16 8.3789 5.2930 4.9072 14 6 9.3881 6.6812 4.5090 15 1 9.3151 7.1400 3.5340 16 6 10.2762 7.1860 5.4487 17 7 10.3649 6.6272 6.6372 18 14 11.3518 8.6530 5.0238 19 1 10.4920 9.8148 4.6826 20 1 12.2063 8.9944 6.1893 21 1 12.2124 8.3158 3.8616 22 6 3.8882 2.6017 1.1117 23 1 -0.5399 -0.9353 -0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.8501 -0.9353 -0.0004 26 1 1.3586 2.1316 0.0896 27 1 2.6213 1.4027 -0.9313 28 1 1.5695 2.1819 2.5157 29 1 1.6683 0.4048 2.5666 30 1 2.6636 1.4544 4.6041 31 1 3.8721 0.5405 3.6687 32 1 4.7764 2.7405 4.3548 33 1 3.4204 3.5570 3.5410 34 1 5.1752 4.6840 1.9454 35 1 6.4396 3.5885 1.3378 36 1 7.0638 3.0162 3.6685 37 1 5.7992 4.1118 4.2760 38 1 6.9097 6.0202 3.1485 39 1 8.1746 4.9252 2.5406 40 1 10.9858 6.9797 7.2938 41 1 3.2396 3.4774 1.1372 42 1 4.4628 2.6024 0.1855 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595660519.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:07 Heat of formation + Delta-G solvation = -8.986431 kcal Electronic energy + Delta-G solvation = -17999.310062 eV Core-core repulsion = 15297.658094 eV Total energy + Delta-G solvation = -2701.651968 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.48011 -36.29077 -33.98291 -32.41981 -31.64167 -31.20901 -26.54558 -26.19707 -25.42787 -22.97376 -22.61619 -20.37763 -20.02352 -19.61270 -17.45378 -16.14329 -15.38110 -15.22761 -15.08114 -14.79130 -14.55524 -14.08490 -14.02533 -13.80129 -13.33874 -13.09032 -12.78506 -12.35061 -12.03256 -11.94490 -11.68628 -11.37202 -11.27530 -11.10466 -11.04384 -10.86309 -10.79335 -10.69034 -10.48876 -10.33574 -10.12707 -9.57140 -9.46548 -9.03606 -8.28666 -8.24684 -6.50976 -6.21025 -3.91180 2.00717 3.22654 3.24302 3.28795 3.55886 3.93771 4.24330 4.52181 4.56347 4.73880 4.87965 4.95597 5.13749 5.14726 5.24891 5.28754 5.34142 5.37980 5.41469 5.48600 5.53423 5.57071 5.64381 5.68135 5.73728 5.77980 5.83985 5.95289 5.96777 6.03221 6.07993 6.21639 6.30306 6.34755 6.36872 6.50122 6.61363 6.75981 7.15065 7.16957 7.61825 8.38079 9.25012 10.87113 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.059185 B = 0.002734 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.975533 B =10238.896096 C =10573.929620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 C -0.091 4.091 4 C -0.079 4.079 5 H 0.080 0.920 6 C -0.113 4.113 7 C -0.117 4.117 8 C 0.046 3.954 9 N -0.537 5.537 10 C 0.061 3.939 11 C -0.101 4.101 12 C -0.112 4.112 13 S -0.133 6.133 14 C -0.516 4.516 15 H 0.071 0.929 16 C 0.070 3.930 17 N -0.870 5.870 18 Si 0.918 3.082 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.274 1.274 22 C 0.060 3.940 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.108 0.892 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.030 0.970 34 H 0.031 0.969 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.268 0.732 41 H 0.030 0.970 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.652 -11.368 -11.358 23.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.162 4.162 3 C -0.129 4.129 4 C -0.098 4.098 5 H 0.098 0.902 6 C -0.151 4.151 7 C -0.155 4.155 8 C -0.082 4.082 9 N -0.262 5.262 10 C -0.068 4.068 11 C -0.139 4.139 12 C -0.261 4.261 13 S 0.095 5.905 14 C -0.664 4.664 15 H 0.090 0.910 16 C -0.138 4.138 17 N -0.506 5.506 18 Si 0.745 3.255 19 H -0.200 1.200 20 H -0.208 1.208 21 H -0.199 1.199 22 C -0.068 4.068 23 H 0.113 0.887 24 H 0.112 0.888 25 H 0.126 0.874 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.049 0.951 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.329 -12.382 -10.211 23.620 hybrid contribution 0.285 2.430 -1.386 2.812 sum -17.044 -9.952 -11.597 22.892 Atomic orbital electron populations 1.23823 0.95990 1.01656 1.02337 1.22942 0.95946 0.98515 0.98801 1.20811 0.98109 0.95383 0.98577 1.21142 0.95834 0.98754 0.94054 0.90159 1.21634 0.97525 1.01607 0.94324 1.21602 0.97528 0.98623 0.97767 1.22254 0.96406 0.96604 0.92912 1.61964 1.18559 1.43717 1.01914 1.22180 0.94673 0.90732 0.99243 1.21441 0.97667 0.98667 0.96140 1.23229 1.00299 0.99260 1.03343 1.84606 1.47880 1.43025 1.14977 1.22648 1.25256 1.15936 1.02604 0.91041 1.25018 0.96664 0.97596 0.94551 1.70011 1.35832 1.40055 1.04655 0.86224 0.79777 0.81508 0.78013 1.19973 1.20825 1.19929 1.22110 0.93984 0.96471 0.94209 0.88719 0.88769 0.87443 0.91633 0.90855 0.92555 0.91871 0.91661 0.91115 0.89419 0.95159 0.95108 0.90740 0.90715 0.91393 0.92385 0.92087 0.92271 0.95148 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.40 14.32 29.01 0.42 -0.98 16 2 C -0.14 -1.06 8.56 -36.03 -0.31 -1.37 16 3 C -0.09 -0.70 5.13 -27.88 -0.14 -0.84 16 4 C -0.08 -0.72 2.34 -90.54 -0.21 -0.93 16 5 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 6 C -0.11 -1.03 5.06 -26.60 -0.13 -1.17 16 7 C -0.12 -1.20 6.09 -26.64 -0.16 -1.36 16 8 C 0.05 0.56 4.85 -3.83 -0.02 0.54 16 9 N -0.54 -6.81 4.81 -234.67 -1.13 -7.94 16 10 C 0.06 0.85 5.27 -3.82 -0.02 0.83 16 11 C -0.10 -1.68 4.47 -26.73 -0.12 -1.80 16 12 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 13 S -0.13 -3.53 21.44 -107.50 -2.30 -5.83 16 14 C -0.52 -14.97 9.50 30.94 0.29 -14.68 16 15 H 0.07 2.00 7.80 -52.49 -0.41 1.60 16 16 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 17 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 18 Si 0.92 21.71 29.55 -169.99 -5.02 16.68 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 C 0.06 0.64 4.71 -3.84 -0.02 0.62 16 23 H 0.09 0.57 8.06 -52.49 -0.42 0.15 16 24 H 0.09 0.62 7.84 -52.49 -0.41 0.21 16 25 H 0.11 0.74 8.06 -52.49 -0.42 0.32 16 26 H 0.06 0.50 7.79 -51.93 -0.40 0.10 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.54 7.47 -51.93 -0.39 0.15 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.16 5.81 -51.93 -0.30 0.86 16 33 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.07 1.14 6.21 -51.93 -0.32 0.81 16 38 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 39 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 40 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.74 8.12 -51.93 -0.42 0.31 16 LS Contribution 344.92 15.07 5.20 5.20 Total: -1.00 -30.44 344.92 -10.55 -40.99 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -7.71 Total: -2.33 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -0.31 Total: -21.29 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: -0.39 Total: -33.42 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -2.30 Total: -5.83 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.44 -10.55 -40.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595660519.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.002 kcal (2) G-P(sol) polarization free energy of solvation -30.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds