Wall clock time and date at job start Mon Mar 30 2020 00:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31011 * 1 3 3 C 1.50694 * 119.99801 * 2 1 4 4 C 1.53005 * 109.47149 * 125.00262 * 3 2 1 5 5 H 1.08994 * 109.50245 * 54.91786 * 4 3 2 6 6 C 1.53119 * 109.49829 * 294.80085 * 4 3 2 7 7 C 1.53127 * 109.15840 * 182.40099 * 6 4 3 8 8 C 1.53043 * 109.27490 * 57.65809 * 7 6 4 9 9 N 1.46846 * 109.52295 * 300.82080 * 8 7 6 10 10 C 1.46901 * 111.00199 * 185.84303 * 9 8 7 11 11 C 1.52999 * 109.47208 * 45.78471 * 10 9 8 12 12 C 1.52998 * 109.47133 * 180.02562 * 11 10 9 13 13 S 1.81001 * 109.47084 * 180.02562 * 12 11 10 14 14 C 1.76192 * 100.00053 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00436 * 0.02562 * 14 13 12 16 16 C 1.38805 * 119.99929 * 179.97438 * 14 13 12 17 17 N 1.31624 * 120.00253 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99752 * 179.72153 * 16 14 13 19 19 H 1.48506 * 109.46826 * 60.00667 * 18 16 14 20 20 H 1.48497 * 109.47051 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47422 * 300.00475 * 18 16 14 22 22 C 1.46843 * 111.20089 * 61.74133 * 9 8 7 23 23 H 1.07997 * 119.99531 * 179.97438 * 1 2 3 24 24 H 1.07999 * 119.99895 * 359.97438 * 1 2 3 25 25 H 1.07999 * 119.99895 * 180.02562 * 2 1 3 26 26 H 1.09001 * 109.47554 * 5.00272 * 3 2 1 27 27 H 1.08996 * 109.47438 * 245.00125 * 3 2 1 28 28 H 1.08998 * 109.52939 * 302.30827 * 6 4 3 29 29 H 1.09001 * 109.52350 * 62.44029 * 6 4 3 30 30 H 1.09002 * 109.50074 * 177.59620 * 7 6 4 31 31 H 1.08994 * 109.50311 * 297.71552 * 7 6 4 32 32 H 1.09001 * 109.46156 * 180.80275 * 8 7 6 33 33 H 1.09003 * 109.46218 * 60.83294 * 8 7 6 34 34 H 1.09003 * 109.46891 * 285.78896 * 10 9 8 35 35 H 1.08995 * 109.47402 * 165.79344 * 10 9 8 36 36 H 1.09003 * 109.46848 * 60.00399 * 11 10 9 37 37 H 1.09001 * 109.47004 * 300.00594 * 11 10 9 38 38 H 1.08998 * 109.46738 * 60.00665 * 12 11 10 39 39 H 1.08996 * 109.47187 * 299.99805 * 12 11 10 40 40 H 0.97000 * 120.00481 * 179.97438 * 17 16 14 41 41 H 1.09006 * 109.46410 * 58.27319 * 22 9 8 42 42 H 1.08997 * 109.46490 * 178.24207 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 1 3.6821 0.4568 1.1416 6 6 2.2451 1.3268 2.4932 7 6 3.2222 1.4155 3.6689 8 6 4.0698 2.6817 3.5269 9 7 4.8063 2.6394 2.2572 10 6 5.7359 3.7718 2.1497 11 6 6.5031 3.9284 3.4642 12 6 7.4708 5.1082 3.3525 13 16 8.3789 5.2930 4.9072 14 6 9.3881 6.6812 4.5090 15 1 9.3151 7.1400 3.5340 16 6 10.2762 7.1860 5.4487 17 7 10.3649 6.6272 6.6372 18 14 11.3518 8.6530 5.0238 19 1 10.4920 9.8148 4.6826 20 1 12.2063 8.9944 6.1893 21 1 12.2124 8.3158 3.8616 22 6 3.8882 2.6017 1.1117 23 1 -0.5399 -0.9353 -0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.8501 -0.9353 -0.0004 26 1 1.3586 2.1316 0.0896 27 1 2.6213 1.4027 -0.9313 28 1 1.5695 2.1819 2.5157 29 1 1.6683 0.4048 2.5666 30 1 2.6636 1.4544 4.6041 31 1 3.8721 0.5405 3.6687 32 1 4.7764 2.7405 4.3548 33 1 3.4204 3.5570 3.5410 34 1 5.1752 4.6840 1.9454 35 1 6.4396 3.5885 1.3378 36 1 7.0638 3.0162 3.6685 37 1 5.7992 4.1118 4.2760 38 1 6.9097 6.0202 3.1485 39 1 8.1746 4.9252 2.5406 40 1 10.9858 6.9797 7.2938 41 1 3.2396 3.4774 1.1372 42 1 4.4628 2.6024 0.1855 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595660519.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:06 Heat of formation + Delta-G solvation = -25.519635 kcal Electronic energy + Delta-G solvation = -18000.026995 eV Core-core repulsion = 15297.658094 eV Total energy + Delta-G solvation = -2702.368902 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.37359 -37.15664 -34.94600 -34.60091 -32.74134 -32.02224 -27.97728 -27.24179 -27.08650 -24.10312 -23.52660 -21.48741 -20.70148 -20.39300 -19.55177 -17.18096 -16.90000 -16.49764 -16.12742 -15.99783 -15.85222 -15.28217 -15.03804 -14.76861 -14.65817 -14.01562 -13.94577 -13.55313 -13.38646 -13.12625 -13.00397 -12.89341 -12.57952 -12.47544 -12.34471 -12.02722 -11.89661 -11.80599 -11.51287 -11.44530 -11.21078 -11.13726 -11.01324 -10.32606 -10.09492 -9.25403 -8.67686 -8.37639 -6.14295 1.30748 1.40587 1.46798 1.47537 1.73411 2.27907 2.92049 2.96317 3.31819 3.78265 3.85637 3.92109 3.99819 4.11387 4.20398 4.29400 4.37137 4.39225 4.46750 4.53492 4.59231 4.65742 4.72439 4.75169 4.79957 4.83992 4.86528 5.04024 5.06600 5.10214 5.17121 5.18687 5.25012 5.26777 5.37104 5.38791 5.54548 5.81859 5.96011 6.11788 6.17393 6.20599 7.04152 8.71551 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.059185 B = 0.002734 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.975533 B =10238.896096 C =10573.929620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.086 4.086 4 C -0.073 4.073 5 H 0.074 0.926 6 C -0.109 4.109 7 C -0.114 4.114 8 C 0.044 3.956 9 N -0.544 5.544 10 C 0.070 3.930 11 C -0.088 4.088 12 C -0.087 4.087 13 S -0.198 6.198 14 C -0.539 4.539 15 H 0.073 0.927 16 C 0.014 3.986 17 N -0.907 5.907 18 Si 0.995 3.005 19 H -0.264 1.264 20 H -0.274 1.274 21 H -0.264 1.264 22 C 0.059 3.941 23 H 0.103 0.897 24 H 0.096 0.904 25 H 0.111 0.889 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.028 0.972 34 H 0.034 0.966 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.272 0.728 41 H 0.031 0.969 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.441 -11.213 -12.838 25.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.172 4.172 3 C -0.123 4.123 4 C -0.092 4.092 5 H 0.093 0.907 6 C -0.146 4.146 7 C -0.152 4.152 8 C -0.083 4.083 9 N -0.269 5.269 10 C -0.059 4.059 11 C -0.126 4.126 12 C -0.236 4.236 13 S 0.031 5.969 14 C -0.687 4.687 15 H 0.091 0.909 16 C -0.191 4.191 17 N -0.544 5.544 18 Si 0.816 3.184 19 H -0.189 1.189 20 H -0.199 1.199 21 H -0.189 1.189 22 C -0.068 4.068 23 H 0.122 0.878 24 H 0.115 0.885 25 H 0.129 0.871 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.046 0.954 34 H 0.052 0.948 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.049 0.951 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.134 -12.240 -11.699 24.810 hybrid contribution 0.453 2.319 -0.946 2.545 sum -17.680 -9.921 -12.645 23.894 Atomic orbital electron populations 1.23965 0.95963 1.02258 1.01490 1.22975 0.96160 0.98467 0.99554 1.20749 0.97812 0.95712 0.98057 1.21080 0.95781 0.97586 0.94716 0.90736 1.21600 0.97213 1.02050 0.93762 1.21581 0.97482 0.97241 0.98881 1.22258 0.96206 0.97619 0.92242 1.61981 1.19216 1.42808 1.02845 1.22009 0.94916 0.91614 0.97360 1.21316 0.96869 0.96508 0.97938 1.23149 1.00079 1.00960 0.99447 1.84627 1.49144 1.43034 1.20130 1.23005 1.26069 1.16667 1.02947 0.90919 1.26094 0.97977 1.00785 0.94237 1.70147 1.36679 1.41754 1.05780 0.85056 0.77749 0.77386 0.78160 1.18906 1.19928 1.18903 1.22194 0.93857 0.97300 0.93483 0.87847 0.88534 0.87092 0.91514 0.90374 0.92516 0.90987 0.90719 0.91597 0.90975 0.95407 0.94765 0.90150 0.91498 0.91569 0.92133 0.91820 0.91942 0.95125 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.37 14.32 67.77 0.97 -1.40 16 2 C -0.15 -1.96 8.56 25.63 0.22 -1.74 16 3 C -0.09 -1.15 5.13 29.85 0.15 -0.99 16 4 C -0.07 -1.19 2.34 -10.74 -0.03 -1.22 16 5 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 6 C -0.11 -1.79 5.06 30.68 0.16 -1.64 16 7 C -0.11 -2.19 6.09 30.65 0.19 -2.01 16 8 C 0.04 1.05 4.85 86.33 0.42 1.47 16 9 N -0.54 -13.17 4.81 -896.35 -4.31 -17.47 16 10 C 0.07 1.88 5.27 86.30 0.46 2.34 16 11 C -0.09 -2.90 4.47 30.59 0.14 -2.77 16 12 C -0.09 -3.56 5.67 71.98 0.41 -3.15 16 13 S -0.20 -10.73 21.44 -56.49 -1.21 -11.94 16 14 C -0.54 -31.57 9.50 67.96 0.65 -30.92 16 15 H 0.07 4.09 7.80 -2.91 -0.02 4.06 16 16 C 0.01 0.80 5.49 84.86 0.47 1.27 16 17 N -0.91 -55.35 13.22 21.65 0.29 -55.07 16 18 Si 0.99 44.26 29.55 68.60 2.03 46.29 16 19 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 22 C 0.06 1.16 4.71 86.33 0.41 1.56 16 23 H 0.10 1.03 8.06 -2.91 -0.02 1.01 16 24 H 0.10 1.09 7.84 -2.91 -0.02 1.07 16 25 H 0.11 1.33 8.06 -2.91 -0.02 1.31 16 26 H 0.07 0.89 7.79 -2.39 -0.02 0.87 16 27 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 1.08 7.47 -2.39 -0.02 1.07 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.07 1.91 5.81 -2.39 -0.01 1.90 16 33 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.03 0.90 8.08 -2.39 -0.02 0.88 16 35 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 36 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.07 2.22 6.21 -2.39 -0.01 2.21 16 38 H 0.06 2.44 8.14 -2.40 -0.02 2.42 16 39 H 0.06 2.56 8.14 -2.40 -0.02 2.54 16 40 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 41 H 0.03 0.61 8.14 -2.38 -0.02 0.59 16 42 H 0.08 1.44 8.12 -2.39 -0.02 1.42 16 Total: -1.00 -65.11 344.92 2.33 -62.78 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.94 Total: 14.61 kcal Atomic # 6 Polarization: -43.79 SS G_CDS: 4.60 Total: -39.20 kcal Atomic # 7 Polarization: -68.52 SS G_CDS: -4.02 Total: -72.54 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: -10.73 SS G_CDS: -1.21 Total: -11.94 kcal Total: -65.11 2.33 -62.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595660519.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.260 kcal (2) G-P(sol) polarization free energy of solvation -65.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds