Wall clock time and date at job start Mon Mar 30 2020 00:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00153 * 2 1 4 4 C 1.53000 * 109.47309 * 121.82354 * 3 2 1 5 5 N 1.46905 * 110.01458 * 303.88504 * 4 3 2 6 6 C 1.46904 * 110.99911 * 302.38368 * 5 4 3 7 7 C 1.52997 * 109.47163 * 176.77077 * 6 5 4 8 8 C 1.53001 * 109.46880 * 180.02562 * 7 6 5 9 9 S 1.81003 * 109.46938 * 180.02562 * 8 7 6 10 10 C 1.76195 * 99.99957 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00326 * 359.97438 * 10 9 8 12 12 C 1.38805 * 119.99929 * 179.97438 * 10 9 8 13 13 N 1.31630 * 119.99898 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00047 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47255 * 59.99881 * 14 12 10 16 16 H 1.48501 * 109.47037 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47283 * 299.99982 * 14 12 10 18 18 C 1.54265 * 110.03354 * 182.44154 * 4 3 2 19 19 C 1.54882 * 104.19442 * 217.10305 * 18 4 3 20 20 C 1.54883 * 102.75232 * 37.94341 * 19 18 4 21 21 C 1.53874 * 110.03266 * 65.27200 * 4 3 2 22 22 H 1.07997 * 119.99937 * 359.97438 * 1 2 3 23 23 H 1.07997 * 120.00118 * 180.02562 * 1 2 3 24 24 H 1.08001 * 120.00272 * 179.97438 * 2 1 3 25 25 H 1.08995 * 109.46614 * 1.81910 * 3 2 1 26 26 H 1.09000 * 109.46681 * 241.82104 * 3 2 1 27 27 H 1.00896 * 110.99700 * 178.43377 * 5 4 3 28 28 H 1.08991 * 109.47355 * 296.78048 * 6 5 4 29 29 H 1.09004 * 109.46570 * 56.77490 * 6 5 4 30 30 H 1.09001 * 109.47300 * 300.00440 * 7 6 5 31 31 H 1.09003 * 109.46561 * 60.00916 * 7 6 5 32 32 H 1.09001 * 109.47476 * 300.00286 * 8 7 6 33 33 H 1.09001 * 109.47325 * 60.00942 * 8 7 6 34 34 H 0.96999 * 119.99928 * 180.02562 * 13 12 10 35 35 H 1.09004 * 110.48478 * 335.78531 * 18 4 3 36 36 H 1.09002 * 110.48318 * 98.42302 * 18 4 3 37 37 H 1.09001 * 110.75778 * 279.62629 * 19 18 4 38 38 H 1.09008 * 110.75391 * 156.25754 * 19 18 4 39 39 H 1.08998 * 110.48840 * 203.37620 * 20 19 18 40 40 H 1.09005 * 110.48594 * 80.73105 * 20 19 18 41 41 H 1.08997 * 110.03182 * 238.56749 * 21 4 3 42 42 H 1.08998 * 110.03420 * 0.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9773 1.3665 1.2256 5 7 2.1887 1.1775 2.4506 6 6 1.1274 2.1879 2.5546 7 6 0.2796 1.9109 3.7977 8 6 -0.8261 2.9629 3.9056 9 16 -1.8287 2.6356 5.3767 10 6 -2.9889 3.9561 5.2562 11 1 -2.9269 4.6564 4.4363 12 6 -3.9828 4.0964 6.2149 13 7 -4.0582 3.2432 7.2144 14 14 -5.2124 5.4968 6.0876 15 1 -5.9602 5.3843 4.8096 16 1 -6.1633 5.4257 7.2260 17 1 -4.4909 6.7942 6.1263 18 6 3.7096 2.7234 1.2714 19 6 5.1221 2.3749 1.8027 20 6 5.4208 1.0192 1.1159 21 6 4.0653 0.2829 1.1268 22 1 -0.5400 0.9353 0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3557 2.1333 0.0326 26 1 2.6655 1.3770 -0.9059 27 1 2.7810 1.1899 3.2674 28 1 1.5752 3.1784 2.6335 29 1 0.4961 2.1442 1.6671 30 1 -0.1682 0.9203 3.7188 31 1 0.9110 1.9546 4.6852 32 1 -0.3787 3.9537 3.9844 33 1 -1.4575 2.9188 3.0182 34 1 -4.7529 3.3410 7.8842 35 1 3.7736 3.1563 0.2730 36 1 3.2036 3.4072 1.9529 37 1 5.1106 2.2644 2.8870 38 1 5.8467 3.1302 1.4979 39 1 6.1637 0.4593 1.6840 40 1 5.7611 1.1768 0.0924 41 1 4.0088 -0.3826 1.9882 42 1 3.9426 -0.2865 0.2054 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595780490.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:07 Heat of formation + Delta-G solvation = -9.993709 kcal Electronic energy + Delta-G solvation = -18464.140515 eV Core-core repulsion = 15762.444868 eV Total energy + Delta-G solvation = -2701.695647 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.78384 -35.33152 -34.31120 -32.40846 -31.68796 -29.04505 -28.62099 -25.80051 -25.27011 -23.95048 -21.55887 -20.50970 -19.92473 -18.68171 -17.42232 -16.30628 -16.08573 -15.31291 -14.86768 -14.77362 -14.53630 -13.76706 -13.67969 -13.52671 -13.34834 -12.87937 -12.41286 -12.16121 -12.02646 -11.85490 -11.39307 -11.28302 -11.21901 -11.10475 -11.03174 -10.84824 -10.75071 -10.71476 -10.57988 -10.55021 -10.20129 -9.48281 -9.15368 -9.02364 -8.29042 -8.25828 -6.48781 -6.19717 -3.89524 2.46738 3.23658 3.24894 3.29444 3.59640 4.14814 4.26159 4.36884 4.47780 4.70818 4.97502 5.12321 5.15984 5.16586 5.25692 5.34111 5.35591 5.40979 5.44038 5.47428 5.58047 5.62742 5.69426 5.74601 5.80306 5.82384 5.87743 5.91811 5.97623 6.04756 6.13119 6.21726 6.25415 6.40318 6.67451 6.74680 6.81628 6.91024 7.20170 7.47887 7.62945 8.39284 9.26301 10.88448 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029530 B = 0.003444 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.961503 B = 8127.246134 C = 8464.058874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.131 4.131 3 C -0.081 4.081 4 C 0.120 3.880 5 N -0.670 5.670 6 C 0.058 3.942 7 C -0.093 4.093 8 C -0.111 4.111 9 S -0.132 6.132 10 C -0.517 4.517 11 H 0.071 0.929 12 C 0.071 3.929 13 N -0.870 5.870 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C -0.160 4.160 19 C -0.124 4.124 20 C -0.126 4.126 21 C -0.113 4.113 22 H 0.092 0.908 23 H 0.093 0.907 24 H 0.103 0.897 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.339 0.661 28 H 0.028 0.972 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.267 0.733 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.116 -4.328 -14.142 22.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.150 4.150 3 C -0.119 4.119 4 C 0.028 3.972 5 N -0.300 5.300 6 C -0.072 4.072 7 C -0.132 4.132 8 C -0.260 4.260 9 S 0.096 5.904 10 C -0.665 4.665 11 H 0.089 0.911 12 C -0.138 4.138 13 N -0.506 5.506 14 Si 0.744 3.256 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.200 1.200 18 C -0.199 4.199 19 C -0.162 4.162 20 C -0.164 4.164 21 C -0.151 4.151 22 H 0.110 0.890 23 H 0.111 0.889 24 H 0.121 0.879 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.157 0.843 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 16.669 -5.685 -13.461 22.167 hybrid contribution -0.463 2.701 -0.650 2.816 sum 16.206 -2.984 -14.111 21.694 Atomic orbital electron populations 1.23726 0.95945 1.01530 1.01731 1.22572 0.95641 0.97583 0.99160 1.20898 0.98175 0.96338 0.96466 1.21495 0.91889 0.92973 0.90839 1.60667 1.14776 1.50826 1.03759 1.22111 0.93232 0.92354 0.99490 1.21210 0.96004 0.99496 0.96467 1.23216 0.99588 1.00223 1.02987 1.84626 1.34415 1.42229 1.29140 1.22658 1.15911 1.14049 1.13881 0.91092 1.25010 0.97270 0.96901 0.94597 1.70016 1.33123 1.35345 1.12088 0.86236 0.80121 0.81395 0.77844 1.19937 1.20822 1.19976 1.23193 0.96410 0.98549 1.01734 1.22461 0.96551 0.97038 1.00117 1.22387 0.97320 0.96183 1.00484 1.22257 0.92760 0.97436 1.02666 0.89008 0.88862 0.87863 0.91501 0.91128 0.84305 0.95421 0.90829 0.90845 0.92057 0.92520 0.92270 0.92285 0.91350 0.91130 0.91573 0.91803 0.91766 0.91844 0.90748 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.24 13.82 29.01 0.40 -1.84 16 2 C -0.13 -1.42 8.42 -36.02 -0.30 -1.72 16 3 C -0.08 -0.82 3.88 -27.88 -0.11 -0.92 16 4 C 0.12 1.17 0.51 -130.48 -0.07 1.10 16 5 N -0.67 -7.82 5.47 -98.83 -0.54 -8.36 16 6 C 0.06 0.79 5.01 -3.82 -0.02 0.77 16 7 C -0.09 -1.56 5.51 -26.73 -0.15 -1.71 16 8 C -0.11 -2.29 5.67 37.16 0.21 -2.08 16 9 S -0.13 -3.54 21.44 -107.50 -2.30 -5.84 16 10 C -0.52 -15.08 9.50 30.94 0.29 -14.78 16 11 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 12 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 13 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 14 Si 0.92 21.79 29.55 -169.99 -5.02 16.77 16 15 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 C -0.16 -1.49 5.84 -25.08 -0.15 -1.64 16 19 C -0.12 -1.02 6.91 -24.75 -0.17 -1.19 16 20 C -0.13 -0.96 6.83 -25.07 -0.17 -1.13 16 21 C -0.11 -0.98 5.77 -25.61 -0.15 -1.12 16 22 H 0.09 1.11 7.56 -52.49 -0.40 0.71 16 23 H 0.09 1.03 8.06 -52.49 -0.42 0.61 16 24 H 0.10 1.04 7.49 -52.49 -0.39 0.65 16 25 H 0.07 0.73 6.21 -51.93 -0.32 0.41 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.34 3.82 8.76 -39.29 -0.34 3.47 16 28 H 0.03 0.37 6.27 -51.93 -0.33 0.05 16 29 H 0.07 1.03 5.39 -51.93 -0.28 0.75 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.16 8.14 -51.91 -0.42 0.74 16 33 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 34 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.07 0.61 7.85 -51.93 -0.41 0.20 16 36 H 0.07 0.74 6.00 -51.93 -0.31 0.43 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.69 7.91 -51.93 -0.41 0.28 16 42 H 0.07 0.56 7.00 -51.93 -0.36 0.20 16 LS Contribution 342.07 15.07 5.15 5.15 Total: -1.00 -30.47 342.07 -9.78 -40.25 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.33 Total: 1.94 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: -0.47 Total: -24.30 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.19 Total: -33.97 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.30 Total: -5.84 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.47 -9.78 -40.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595780490.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.259 kcal (2) G-P(sol) polarization free energy of solvation -30.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds