Wall clock time and date at job start Mon Mar 30 2020 00:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00153 * 2 1 4 4 C 1.53000 * 109.47309 * 121.82354 * 3 2 1 5 5 N 1.46905 * 110.01458 * 303.88504 * 4 3 2 6 6 C 1.46904 * 110.99911 * 302.38368 * 5 4 3 7 7 C 1.52997 * 109.47163 * 176.77077 * 6 5 4 8 8 C 1.53001 * 109.46880 * 180.02562 * 7 6 5 9 9 S 1.81003 * 109.46938 * 180.02562 * 8 7 6 10 10 C 1.76195 * 99.99957 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00326 * 359.97438 * 10 9 8 12 12 C 1.38805 * 119.99929 * 179.97438 * 10 9 8 13 13 N 1.31630 * 119.99898 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00047 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47255 * 59.99881 * 14 12 10 16 16 H 1.48501 * 109.47037 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47283 * 299.99982 * 14 12 10 18 18 C 1.54265 * 110.03354 * 182.44154 * 4 3 2 19 19 C 1.54882 * 104.19442 * 217.10305 * 18 4 3 20 20 C 1.54883 * 102.75232 * 37.94341 * 19 18 4 21 21 C 1.53874 * 110.03266 * 65.27200 * 4 3 2 22 22 H 1.07997 * 119.99937 * 359.97438 * 1 2 3 23 23 H 1.07997 * 120.00118 * 180.02562 * 1 2 3 24 24 H 1.08001 * 120.00272 * 179.97438 * 2 1 3 25 25 H 1.08995 * 109.46614 * 1.81910 * 3 2 1 26 26 H 1.09000 * 109.46681 * 241.82104 * 3 2 1 27 27 H 1.00896 * 110.99700 * 178.43377 * 5 4 3 28 28 H 1.08991 * 109.47355 * 296.78048 * 6 5 4 29 29 H 1.09004 * 109.46570 * 56.77490 * 6 5 4 30 30 H 1.09001 * 109.47300 * 300.00440 * 7 6 5 31 31 H 1.09003 * 109.46561 * 60.00916 * 7 6 5 32 32 H 1.09001 * 109.47476 * 300.00286 * 8 7 6 33 33 H 1.09001 * 109.47325 * 60.00942 * 8 7 6 34 34 H 0.96999 * 119.99928 * 180.02562 * 13 12 10 35 35 H 1.09004 * 110.48478 * 335.78531 * 18 4 3 36 36 H 1.09002 * 110.48318 * 98.42302 * 18 4 3 37 37 H 1.09001 * 110.75778 * 279.62629 * 19 18 4 38 38 H 1.09008 * 110.75391 * 156.25754 * 19 18 4 39 39 H 1.08998 * 110.48840 * 203.37620 * 20 19 18 40 40 H 1.09005 * 110.48594 * 80.73105 * 20 19 18 41 41 H 1.08997 * 110.03182 * 238.56749 * 21 4 3 42 42 H 1.08998 * 110.03420 * 0.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9773 1.3665 1.2256 5 7 2.1887 1.1775 2.4506 6 6 1.1274 2.1879 2.5546 7 6 0.2796 1.9109 3.7977 8 6 -0.8261 2.9629 3.9056 9 16 -1.8287 2.6356 5.3767 10 6 -2.9889 3.9561 5.2562 11 1 -2.9269 4.6564 4.4363 12 6 -3.9828 4.0964 6.2149 13 7 -4.0582 3.2432 7.2144 14 14 -5.2124 5.4968 6.0876 15 1 -5.9602 5.3843 4.8096 16 1 -6.1633 5.4257 7.2260 17 1 -4.4909 6.7942 6.1263 18 6 3.7096 2.7234 1.2714 19 6 5.1221 2.3749 1.8027 20 6 5.4208 1.0192 1.1159 21 6 4.0653 0.2829 1.1268 22 1 -0.5400 0.9353 0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3557 2.1333 0.0326 26 1 2.6655 1.3770 -0.9059 27 1 2.7810 1.1899 3.2674 28 1 1.5752 3.1784 2.6335 29 1 0.4961 2.1442 1.6671 30 1 -0.1682 0.9203 3.7188 31 1 0.9110 1.9546 4.6852 32 1 -0.3787 3.9537 3.9844 33 1 -1.4575 2.9188 3.0182 34 1 -4.7529 3.3410 7.8842 35 1 3.7736 3.1563 0.2730 36 1 3.2036 3.4072 1.9529 37 1 5.1106 2.2644 2.8870 38 1 5.8467 3.1302 1.4979 39 1 6.1637 0.4593 1.6840 40 1 5.7611 1.1768 0.0924 41 1 4.0088 -0.3826 1.9882 42 1 3.9426 -0.2865 0.2054 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595780490.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:07 Heat of formation + Delta-G solvation = -26.792966 kcal Electronic energy + Delta-G solvation = -18464.868986 eV Core-core repulsion = 15762.444868 eV Total energy + Delta-G solvation = -2702.424117 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.59139 -36.38134 -35.23899 -34.61051 -32.85184 -29.83498 -29.45866 -27.84486 -26.49543 -24.97559 -22.69989 -21.45716 -20.73661 -19.64349 -19.40754 -17.14571 -17.04598 -16.90153 -16.35789 -16.19129 -15.67599 -15.22701 -14.78348 -14.50418 -14.25434 -14.23582 -13.57791 -13.54465 -13.08498 -13.07283 -12.91285 -12.75192 -12.66241 -12.34279 -12.14196 -11.95932 -11.91057 -11.73537 -11.50873 -11.39909 -11.28999 -11.22488 -11.13799 -10.32617 -10.02635 -9.23543 -8.67210 -8.37700 -6.14215 1.30472 1.40150 1.46948 1.58586 1.74384 2.28128 2.96225 3.17607 3.35352 3.64200 3.74566 3.95110 4.05114 4.19901 4.27092 4.35177 4.40107 4.47085 4.48096 4.54830 4.62306 4.71786 4.75276 4.79530 4.83280 4.96091 4.99015 5.01822 5.10393 5.16081 5.17469 5.24378 5.26571 5.35378 5.38422 5.47928 5.51741 5.87017 6.02896 6.17154 6.24686 6.55126 7.04061 8.71593 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029530 B = 0.003444 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.961503 B = 8127.246134 C = 8464.058874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.124 4.124 3 C -0.082 4.082 4 C 0.120 3.880 5 N -0.673 5.673 6 C 0.073 3.927 7 C -0.080 4.080 8 C -0.086 4.086 9 S -0.197 6.197 10 C -0.541 4.541 11 H 0.072 0.928 12 C 0.015 3.985 13 N -0.908 5.908 14 Si 0.994 3.006 15 H -0.264 1.264 16 H -0.274 1.274 17 H -0.264 1.264 18 C -0.158 4.158 19 C -0.123 4.123 20 C -0.121 4.121 21 C -0.110 4.110 22 H 0.082 0.918 23 H 0.095 0.905 24 H 0.113 0.887 25 H 0.056 0.944 26 H 0.088 0.912 27 H 0.342 0.658 28 H 0.032 0.968 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.272 0.728 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.202 -3.665 -15.448 24.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.142 4.142 3 C -0.120 4.120 4 C 0.029 3.971 5 N -0.304 5.304 6 C -0.057 4.057 7 C -0.119 4.119 8 C -0.235 4.235 9 S 0.032 5.968 10 C -0.688 4.688 11 H 0.090 0.910 12 C -0.190 4.190 13 N -0.544 5.544 14 Si 0.816 3.184 15 H -0.189 1.189 16 H -0.199 1.199 17 H -0.189 1.189 18 C -0.197 4.197 19 C -0.161 4.161 20 C -0.158 4.158 21 C -0.148 4.148 22 H 0.101 0.899 23 H 0.113 0.887 24 H 0.131 0.869 25 H 0.074 0.926 26 H 0.107 0.893 27 H 0.161 0.839 28 H 0.050 0.950 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 17.772 -5.030 -14.775 23.653 hybrid contribution -0.718 2.446 -0.284 2.565 sum 17.054 -2.584 -15.059 22.898 Atomic orbital electron populations 1.23753 0.96501 1.01265 1.03331 1.22735 0.95393 0.98370 0.97700 1.20942 0.98168 0.95476 0.97378 1.21563 0.91946 0.93969 0.89613 1.60628 1.14939 1.50017 1.04829 1.21845 0.93388 0.93139 0.97364 1.21088 0.95087 0.97500 0.98260 1.23139 0.99390 1.01591 0.99394 1.84635 1.35902 1.42763 1.33530 1.23016 1.16882 1.14604 1.14343 0.91018 1.26080 0.99240 0.99741 0.93894 1.70151 1.34055 1.37276 1.12902 0.85070 0.77315 0.77718 0.78345 1.18917 1.19865 1.18879 1.23159 0.96896 0.97801 1.01873 1.22462 0.95971 0.97731 0.99904 1.22367 0.96793 0.95548 1.01119 1.22234 0.92829 0.96998 1.02776 0.89936 0.88689 0.86903 0.92559 0.89338 0.83929 0.94954 0.91055 0.91933 0.92063 0.92206 0.92279 0.91928 0.90638 0.92482 0.92034 0.90973 0.91024 0.90874 0.91370 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.83 13.82 67.78 0.94 -3.89 16 2 C -0.12 -2.50 8.42 25.65 0.22 -2.28 16 3 C -0.08 -1.50 3.88 29.85 0.12 -1.38 16 4 C 0.12 2.12 0.51 4.25 0.00 2.13 16 5 N -0.67 -14.85 5.47 -466.59 -2.55 -17.40 16 6 C 0.07 1.92 5.01 86.30 0.43 2.36 16 7 C -0.08 -2.68 5.51 30.59 0.17 -2.51 16 8 C -0.09 -3.56 5.67 71.98 0.41 -3.15 16 9 S -0.20 -10.77 21.44 -56.49 -1.21 -11.98 16 10 C -0.54 -31.92 9.50 67.96 0.65 -31.27 16 11 H 0.07 4.07 7.80 -2.91 -0.02 4.05 16 12 C 0.02 0.89 5.49 84.86 0.47 1.36 16 13 N -0.91 -55.65 13.22 21.65 0.29 -55.37 16 14 Si 0.99 44.48 29.55 68.60 2.03 46.51 16 15 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 16 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 17 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 18 C -0.16 -2.64 5.84 31.67 0.18 -2.46 16 19 C -0.12 -1.75 6.91 31.88 0.22 -1.53 16 20 C -0.12 -1.50 6.83 31.67 0.22 -1.28 16 21 C -0.11 -1.64 5.77 31.32 0.18 -1.46 16 22 H 0.08 2.01 7.56 -2.91 -0.02 1.99 16 23 H 0.09 2.08 8.06 -2.91 -0.02 2.06 16 24 H 0.11 2.06 7.49 -2.91 -0.02 2.04 16 25 H 0.06 1.16 6.21 -2.39 -0.01 1.14 16 26 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.34 7.26 8.76 -89.70 -0.79 6.47 16 28 H 0.03 0.83 6.27 -2.39 -0.01 0.82 16 29 H 0.07 1.93 5.39 -2.38 -0.01 1.92 16 30 H 0.06 2.23 8.14 -2.39 -0.02 2.22 16 31 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.06 2.44 8.14 -2.40 -0.02 2.42 16 33 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 35 H 0.07 1.16 7.85 -2.38 -0.02 1.14 16 36 H 0.06 1.12 6.00 -2.39 -0.01 1.10 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.07 0.79 8.14 -2.38 -0.02 0.78 16 41 H 0.07 1.12 7.91 -2.39 -0.02 1.10 16 42 H 0.08 1.04 7.00 -2.39 -0.02 1.02 16 Total: -1.00 -65.55 342.07 2.93 -62.61 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.19 Total: 21.00 kcal Atomic # 6 Polarization: -49.57 SS G_CDS: 4.19 Total: -45.38 kcal Atomic # 7 Polarization: -70.50 SS G_CDS: -2.27 Total: -72.77 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: -10.77 SS G_CDS: -1.21 Total: -11.98 kcal Total: -65.55 2.93 -62.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595780490.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.821 kcal (2) G-P(sol) polarization free energy of solvation -65.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds