Wall clock time and date at job start Mon Mar 30 2020 01:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81397 * 102.99995 * 2 1 4 4 C 1.53004 * 112.85039 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.46863 * 42.93113 * 4 3 2 6 6 C 1.46842 * 110.99789 * 176.44213 * 5 4 3 7 7 C 1.53034 * 109.52265 * 174.15977 * 6 5 4 8 8 C 1.53121 * 109.27971 * 59.17952 * 7 6 5 9 9 C 1.53118 * 109.15777 * 302.34779 * 8 7 6 10 10 H 1.09010 * 109.49973 * 297.70933 * 9 8 7 11 11 C 1.50705 * 109.50037 * 177.59729 * 9 8 7 12 12 H 1.07993 * 119.99768 * 275.21288 * 11 9 8 13 13 C 1.37872 * 119.99906 * 95.21417 * 11 9 8 14 14 N 1.31521 * 119.99859 * 184.77788 * 13 11 9 15 15 Si 1.86803 * 120.00461 * 4.77812 * 13 11 9 16 16 H 1.48495 * 109.47271 * 84.85847 * 15 13 11 17 17 H 1.48503 * 109.47256 * 204.86180 * 15 13 11 18 18 H 1.48503 * 109.46664 * 324.85715 * 15 13 11 19 19 C 1.46846 * 111.00041 * 52.22941 * 5 4 3 20 20 C 1.53781 * 113.61615 * 311.19762 * 3 2 1 21 21 C 1.54049 * 86.98675 * 140.01699 * 20 3 2 22 22 C 1.53777 * 87.07852 * 334.56944 * 21 20 3 23 23 H 1.09002 * 109.47344 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47109 * 300.00229 * 1 2 3 25 25 H 1.08998 * 109.47545 * 59.99819 * 1 2 3 26 26 H 1.08997 * 109.46570 * 282.92709 * 4 3 2 27 27 H 1.09001 * 109.46625 * 162.93050 * 4 3 2 28 28 H 1.09004 * 109.46492 * 294.17415 * 6 5 4 29 29 H 1.08998 * 109.46587 * 54.14249 * 6 5 4 30 30 H 1.09002 * 109.50145 * 179.12052 * 7 6 5 31 31 H 1.09001 * 109.50415 * 299.23370 * 7 6 5 32 32 H 1.08996 * 109.52031 * 182.44098 * 8 7 6 33 33 H 1.08997 * 109.57070 * 62.28067 * 8 7 6 34 34 H 0.96998 * 120.00228 * 180.02562 * 14 13 11 35 35 H 1.08997 * 109.46360 * 305.85420 * 19 5 4 36 36 H 1.09002 * 109.45756 * 65.82756 * 19 5 4 37 37 H 1.08995 * 113.61659 * 254.61607 * 20 3 2 38 38 H 1.09003 * 113.61713 * 25.51815 * 20 3 2 39 39 H 1.08996 * 113.62297 * 220.02064 * 21 20 3 40 40 H 1.09007 * 113.68940 * 89.13004 * 21 20 3 41 41 H 1.09001 * 113.61387 * 270.88022 * 22 21 20 42 42 H 1.09003 * 113.69123 * 139.98684 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7295 2.0292 -0.0006 5 7 4.3850 1.1140 -0.9444 6 6 5.8239 1.3929 -1.0346 7 6 6.4963 0.3331 -1.9102 8 6 5.8648 0.3549 -3.3050 9 6 4.3587 0.1100 -3.1785 10 1 4.1852 -0.8777 -2.7510 11 6 3.7201 0.1883 -4.5413 12 1 3.4285 1.1459 -4.9467 13 6 3.5081 -0.9625 -5.2704 14 7 3.0380 -0.8869 -6.4965 15 14 3.8883 -2.6290 -4.5171 16 1 2.7244 -3.0878 -3.7171 17 1 4.1637 -3.6096 -5.5978 18 1 5.0793 -2.5144 -3.6375 19 6 3.7482 1.1761 -2.2661 20 6 1.4564 2.5765 -1.0602 21 6 1.3180 3.6836 0.0020 22 6 1.4563 2.5765 1.0603 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 4.1272 1.8648 1.0008 27 1 3.9192 3.0594 -0.3023 28 1 5.9760 2.3781 -1.4754 29 1 6.2615 1.3703 -0.0365 30 1 7.5617 0.5494 -1.9897 31 1 6.3566 -0.6509 -1.4627 32 1 6.3109 -0.4275 -3.9189 33 1 6.0383 1.3256 -3.7692 34 1 2.8885 -1.6965 -7.0093 35 1 2.6782 0.9960 -2.1625 36 1 3.9100 2.1623 -2.7011 37 1 2.0676 2.8640 -1.9156 38 1 0.5060 2.1279 -1.3496 39 1 0.3419 4.1687 0.0027 40 1 2.1440 4.3948 0.0035 41 1 0.5060 2.1278 1.3496 42 1 2.0673 2.8628 1.9163 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597177454.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:35 Heat of formation + Delta-G solvation = 20.556396 kcal Electronic energy + Delta-G solvation = -20009.463429 eV Core-core repulsion = 17309.092534 eV Total energy + Delta-G solvation = -2700.370895 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.70561 -37.57792 -33.48716 -31.98405 -30.22266 -28.73257 -27.46200 -25.93823 -24.85976 -24.08065 -21.70242 -21.08057 -18.92845 -18.57157 -16.99566 -16.50608 -15.29733 -15.05467 -14.85851 -14.31634 -13.97188 -13.75750 -13.63891 -13.15066 -13.04004 -12.70763 -12.49397 -12.40883 -12.05611 -12.02169 -11.65246 -11.27310 -11.12547 -10.99236 -10.83571 -10.59237 -10.49530 -10.43087 -10.10852 -9.68480 -9.40345 -9.18984 -9.15457 -8.82232 -8.39971 -7.68764 -7.12827 -5.98679 -3.96919 1.99688 2.96308 3.41693 3.47816 3.54258 4.22977 4.50143 4.54228 4.61425 4.76564 4.79785 5.21261 5.30983 5.34264 5.34754 5.53105 5.57674 5.61751 5.67784 5.74174 5.78548 5.81692 5.88433 5.94424 6.08170 6.11826 6.12765 6.26282 6.31587 6.46699 6.52833 6.58568 6.85423 6.96131 7.00332 7.43019 7.59277 7.71496 7.74123 7.98533 8.63088 9.06089 9.66566 11.14633 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018421 B = 0.007611 C = 0.006544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.671758 B = 3678.155145 C = 4277.963593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.189 6.189 3 C -0.045 4.045 4 C 0.094 3.906 5 N -0.533 5.533 6 C 0.064 3.936 7 C -0.119 4.119 8 C -0.114 4.114 9 C 0.023 3.977 10 H 0.041 0.959 11 C -0.507 4.507 12 H 0.068 0.932 13 C 0.073 3.927 14 N -0.905 5.905 15 Si 0.877 3.123 16 H -0.274 1.274 17 H -0.294 1.294 18 H -0.263 1.263 19 C 0.066 3.934 20 C -0.139 4.139 21 C -0.138 4.138 22 C -0.130 4.130 23 H 0.097 0.903 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.039 0.961 28 H 0.025 0.975 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.262 0.738 35 H 0.088 0.912 36 H 0.014 0.986 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.935 6.615 15.465 16.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.042 5.958 3 C -0.156 4.156 4 C -0.035 4.035 5 N -0.258 5.258 6 C -0.064 4.064 7 C -0.157 4.157 8 C -0.152 4.152 9 C 0.003 3.997 10 H 0.059 0.941 11 C -0.545 4.545 12 H 0.086 0.914 13 C -0.129 4.129 14 N -0.543 5.543 15 Si 0.705 3.295 16 H -0.200 1.200 17 H -0.221 1.221 18 H -0.188 1.188 19 C -0.061 4.061 20 C -0.178 4.178 21 C -0.177 4.177 22 C -0.170 4.170 23 H 0.115 0.885 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.033 0.967 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.357 5.086 15.479 16.350 hybrid contribution -0.593 0.949 -0.088 1.122 sum -1.950 6.035 15.391 16.646 Atomic orbital electron populations 1.23601 0.97632 1.05929 1.04170 1.87287 1.02987 1.08679 1.96832 1.24191 0.98208 0.93676 0.99513 1.21635 0.89441 0.94617 0.97821 1.62096 1.02257 1.50163 1.11263 1.21965 0.88511 0.97116 0.98830 1.21658 0.97634 0.98860 0.97504 1.21886 0.99129 1.00598 0.93564 1.19121 0.90919 0.95155 0.94482 0.94060 1.20947 1.39360 0.94925 0.99255 0.91361 1.25019 0.94373 0.98973 0.94488 1.69921 1.46183 1.28665 1.09569 0.86848 0.79865 0.84058 0.78742 1.19997 1.22091 1.18784 1.22560 0.99984 0.97879 0.85641 1.23537 1.00822 0.95959 0.97528 1.22889 1.02015 0.96310 0.96528 1.23260 1.00283 0.96565 0.96934 0.88471 0.91328 0.90587 0.90692 0.94258 0.95712 0.92206 0.93074 0.91954 0.93113 0.93450 0.92851 0.89415 0.96743 0.89540 0.89636 0.91321 0.90011 0.89839 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.75 101.05 0.99 -0.83 16 2 S -0.19 -3.05 19.82 -107.50 -2.13 -5.18 16 3 C -0.05 -0.63 0.74 -89.80 -0.07 -0.70 16 4 C 0.09 1.37 4.62 -3.82 -0.02 1.36 16 5 N -0.53 -9.48 4.07 -234.68 -0.96 -10.43 16 6 C 0.06 1.05 5.46 -3.84 -0.02 1.03 16 7 C -0.12 -2.13 6.09 -26.65 -0.16 -2.29 16 8 C -0.11 -2.47 5.27 -26.61 -0.14 -2.61 16 9 C 0.02 0.54 1.92 -91.69 -0.18 0.36 16 10 H 0.04 1.05 5.30 -51.92 -0.28 0.78 16 11 C -0.51 -14.28 8.86 -34.44 -0.31 -14.59 16 12 H 0.07 2.08 8.06 -52.49 -0.42 1.66 16 13 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 14 N -0.91 -27.94 13.96 55.43 0.77 -27.17 16 15 Si 0.88 22.42 26.99 -169.99 -4.59 17.83 16 16 H -0.27 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 18 H -0.26 -6.52 6.82 56.52 0.39 -6.14 16 19 C 0.07 1.37 3.07 -3.84 -0.01 1.36 16 20 C -0.14 -1.90 5.64 -25.78 -0.15 -2.04 16 21 C -0.14 -1.48 7.74 -25.78 -0.20 -1.67 16 22 C -0.13 -1.42 7.11 -25.92 -0.18 -1.60 16 23 H 0.10 1.15 8.14 -51.92 -0.42 0.73 16 24 H 0.07 0.72 6.57 -51.92 -0.34 0.38 16 25 H 0.08 0.96 6.57 -51.93 -0.34 0.62 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.04 0.55 7.40 -51.93 -0.38 0.16 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.86 8.12 -51.93 -0.42 0.43 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.09 1.85 4.35 -51.93 -0.23 1.63 16 36 H 0.01 0.31 7.73 -51.93 -0.40 -0.10 16 37 H 0.09 1.35 6.26 -51.93 -0.32 1.02 16 38 H 0.09 1.17 6.10 -51.93 -0.32 0.85 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.83 7.73 -51.93 -0.40 0.43 16 41 H 0.08 0.86 6.10 -51.93 -0.32 0.54 16 42 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 LS Contribution 319.45 15.07 4.81 4.81 Total: -1.00 -30.38 319.45 -9.76 -40.14 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -7.13 Total: 0.20 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -0.54 Total: -20.20 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: -0.18 Total: -37.60 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.59 Total: 17.83 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -2.13 Total: -5.18 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.38 -9.76 -40.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597177454.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.695 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds