Wall clock time and date at job start Mon Mar 30 2020 01:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81397 * 102.99995 * 2 1 4 4 C 1.53004 * 112.85039 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.46863 * 42.93113 * 4 3 2 6 6 C 1.46842 * 110.99789 * 176.44213 * 5 4 3 7 7 C 1.53034 * 109.52265 * 174.15977 * 6 5 4 8 8 C 1.53121 * 109.27971 * 59.17952 * 7 6 5 9 9 C 1.53118 * 109.15777 * 302.34779 * 8 7 6 10 10 H 1.09010 * 109.49973 * 297.70933 * 9 8 7 11 11 C 1.50705 * 109.50037 * 177.59729 * 9 8 7 12 12 H 1.07993 * 119.99768 * 275.21288 * 11 9 8 13 13 C 1.37872 * 119.99906 * 95.21417 * 11 9 8 14 14 N 1.31521 * 119.99859 * 184.77788 * 13 11 9 15 15 Si 1.86803 * 120.00461 * 4.77812 * 13 11 9 16 16 H 1.48495 * 109.47271 * 84.85847 * 15 13 11 17 17 H 1.48503 * 109.47256 * 204.86180 * 15 13 11 18 18 H 1.48503 * 109.46664 * 324.85715 * 15 13 11 19 19 C 1.46846 * 111.00041 * 52.22941 * 5 4 3 20 20 C 1.53781 * 113.61615 * 311.19762 * 3 2 1 21 21 C 1.54049 * 86.98675 * 140.01699 * 20 3 2 22 22 C 1.53777 * 87.07852 * 334.56944 * 21 20 3 23 23 H 1.09002 * 109.47344 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47109 * 300.00229 * 1 2 3 25 25 H 1.08998 * 109.47545 * 59.99819 * 1 2 3 26 26 H 1.08997 * 109.46570 * 282.92709 * 4 3 2 27 27 H 1.09001 * 109.46625 * 162.93050 * 4 3 2 28 28 H 1.09004 * 109.46492 * 294.17415 * 6 5 4 29 29 H 1.08998 * 109.46587 * 54.14249 * 6 5 4 30 30 H 1.09002 * 109.50145 * 179.12052 * 7 6 5 31 31 H 1.09001 * 109.50415 * 299.23370 * 7 6 5 32 32 H 1.08996 * 109.52031 * 182.44098 * 8 7 6 33 33 H 1.08997 * 109.57070 * 62.28067 * 8 7 6 34 34 H 0.96998 * 120.00228 * 180.02562 * 14 13 11 35 35 H 1.08997 * 109.46360 * 305.85420 * 19 5 4 36 36 H 1.09002 * 109.45756 * 65.82756 * 19 5 4 37 37 H 1.08995 * 113.61659 * 254.61607 * 20 3 2 38 38 H 1.09003 * 113.61713 * 25.51815 * 20 3 2 39 39 H 1.08996 * 113.62297 * 220.02064 * 21 20 3 40 40 H 1.09007 * 113.68940 * 89.13004 * 21 20 3 41 41 H 1.09001 * 113.61387 * 270.88022 * 22 21 20 42 42 H 1.09003 * 113.69123 * 139.98684 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7295 2.0292 -0.0006 5 7 4.3850 1.1140 -0.9444 6 6 5.8239 1.3929 -1.0346 7 6 6.4963 0.3331 -1.9102 8 6 5.8648 0.3549 -3.3050 9 6 4.3587 0.1100 -3.1785 10 1 4.1852 -0.8777 -2.7510 11 6 3.7201 0.1883 -4.5413 12 1 3.4285 1.1459 -4.9467 13 6 3.5081 -0.9625 -5.2704 14 7 3.0380 -0.8869 -6.4965 15 14 3.8883 -2.6290 -4.5171 16 1 2.7244 -3.0878 -3.7171 17 1 4.1637 -3.6096 -5.5978 18 1 5.0793 -2.5144 -3.6375 19 6 3.7482 1.1761 -2.2661 20 6 1.4564 2.5765 -1.0602 21 6 1.3180 3.6836 0.0020 22 6 1.4563 2.5765 1.0603 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 4.1272 1.8648 1.0008 27 1 3.9192 3.0594 -0.3023 28 1 5.9760 2.3781 -1.4754 29 1 6.2615 1.3703 -0.0365 30 1 7.5617 0.5494 -1.9897 31 1 6.3566 -0.6509 -1.4627 32 1 6.3109 -0.4275 -3.9189 33 1 6.0383 1.3256 -3.7692 34 1 2.8885 -1.6965 -7.0093 35 1 2.6782 0.9960 -2.1625 36 1 3.9100 2.1623 -2.7011 37 1 2.0676 2.8640 -1.9156 38 1 0.5060 2.1279 -1.3496 39 1 0.3419 4.1687 0.0027 40 1 2.1440 4.3948 0.0035 41 1 0.5060 2.1278 1.3496 42 1 2.0673 2.8628 1.9163 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597177454.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:35 Heat of formation + Delta-G solvation = 2.510947 kcal Electronic energy + Delta-G solvation = -20010.245938 eV Core-core repulsion = 17309.092534 eV Total energy + Delta-G solvation = -2701.153404 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.87795 -38.95835 -35.33129 -33.78222 -31.97940 -29.75489 -28.67961 -27.25719 -26.49679 -25.30998 -23.06033 -22.77319 -20.45688 -19.77596 -18.98177 -17.84509 -16.81028 -16.24525 -16.06567 -15.76339 -15.68713 -14.98576 -14.80662 -14.67408 -14.54852 -14.29949 -13.97423 -13.89382 -13.39769 -13.00969 -12.90066 -12.87664 -12.75043 -12.34384 -12.30552 -12.15214 -11.83685 -11.72172 -11.54364 -11.42852 -11.19532 -10.91790 -10.76462 -10.58438 -10.29834 -9.07888 -8.35819 -8.27299 -6.28578 0.90686 1.35045 1.37161 1.48418 1.89078 2.37375 3.00916 3.13064 3.46976 3.60775 3.69724 3.83710 4.14932 4.19697 4.27292 4.31416 4.37308 4.39870 4.53067 4.56163 4.66881 4.72571 4.75580 4.79844 4.89745 4.92310 4.93493 5.01924 5.05280 5.06062 5.12167 5.19229 5.25636 5.27561 5.39320 5.60678 5.70036 5.84502 6.21380 6.34013 6.43767 6.79026 7.37524 8.89741 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018421 B = 0.007611 C = 0.006544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.671758 B = 3678.155145 C = 4277.963593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.269 6.269 3 C -0.041 4.041 4 C 0.093 3.907 5 N -0.542 5.542 6 C 0.063 3.937 7 C -0.112 4.112 8 C -0.113 4.113 9 C 0.021 3.979 10 H 0.028 0.972 11 C -0.506 4.506 12 H 0.029 0.971 13 C 0.018 3.982 14 N -0.951 5.951 15 Si 0.938 3.062 16 H -0.271 1.271 17 H -0.289 1.289 18 H -0.250 1.250 19 C 0.086 3.914 20 C -0.150 4.150 21 C -0.124 4.124 22 C -0.115 4.115 23 H 0.101 0.899 24 H 0.094 0.906 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.051 0.949 28 H 0.028 0.972 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.034 0.966 33 H 0.040 0.960 34 H 0.264 0.736 35 H 0.079 0.921 36 H 0.000 1.000 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.432 7.188 18.629 20.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S -0.039 6.039 3 C -0.151 4.151 4 C -0.035 4.035 5 N -0.266 5.266 6 C -0.065 4.065 7 C -0.149 4.149 8 C -0.151 4.151 9 C 0.002 3.998 10 H 0.047 0.953 11 C -0.545 4.545 12 H 0.047 0.953 13 C -0.179 4.179 14 N -0.592 5.592 15 Si 0.763 3.237 16 H -0.196 1.196 17 H -0.215 1.215 18 H -0.174 1.174 19 C -0.042 4.042 20 C -0.190 4.190 21 C -0.163 4.163 22 C -0.155 4.155 23 H 0.120 0.880 24 H 0.112 0.888 25 H 0.089 0.911 26 H 0.113 0.887 27 H 0.069 0.931 28 H 0.047 0.953 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.019 0.981 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.844 5.674 18.667 19.529 hybrid contribution -0.789 0.862 -1.119 1.618 sum -1.633 6.536 17.548 18.797 Atomic orbital electron populations 1.23561 0.94175 1.06606 1.05156 1.87437 1.07083 1.12276 1.97066 1.24324 0.98186 0.91479 1.01113 1.21760 0.89704 0.94406 0.97672 1.62016 1.03129 1.51874 1.09620 1.22051 0.87589 0.96554 1.00299 1.21601 0.99255 0.99349 0.94735 1.21763 0.97500 0.99599 0.96235 1.19070 0.92495 0.95678 0.92572 0.95331 1.21227 1.38805 0.93219 1.01250 0.95311 1.25792 0.94584 1.02736 0.94780 1.70053 1.48234 1.29728 1.11135 0.85871 0.80144 0.79568 0.78126 1.19623 1.21544 1.17420 1.22132 0.99508 0.95666 0.86928 1.23558 1.00176 0.97815 0.97424 1.22849 1.03372 0.95629 0.94402 1.23222 1.00360 0.95236 0.96679 0.88010 0.88750 0.91068 0.88722 0.93133 0.95336 0.88927 0.90078 0.92487 0.94682 0.94092 0.92720 0.90316 0.98150 0.92320 0.90202 0.89630 0.89131 0.88968 0.88856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 9.75 113.37 1.11 -1.89 16 2 S -0.27 -8.46 19.82 -56.49 -1.12 -9.58 16 3 C -0.04 -1.06 0.74 -10.26 -0.01 -1.07 16 4 C 0.09 2.47 4.62 86.30 0.40 2.87 16 5 N -0.54 -18.35 4.07 -896.38 -3.65 -22.00 16 6 C 0.06 1.87 5.46 86.33 0.47 2.35 16 7 C -0.11 -3.74 6.09 30.65 0.19 -3.55 16 8 C -0.11 -4.87 5.27 30.67 0.16 -4.71 16 9 C 0.02 1.03 1.92 -11.49 -0.02 1.01 16 10 H 0.03 1.46 5.30 -2.38 -0.01 1.45 16 11 C -0.51 -29.78 8.86 25.60 0.23 -29.55 16 12 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 13 C 0.02 1.07 5.47 84.65 0.46 1.53 16 14 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 15 Si 0.94 47.19 26.99 68.60 1.85 49.04 16 16 H -0.27 -13.38 7.11 99.48 0.71 -12.68 16 17 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 18 H -0.25 -11.96 6.82 99.48 0.68 -11.28 16 19 C 0.09 3.57 3.07 86.32 0.26 3.84 16 20 C -0.15 -3.98 5.64 31.21 0.18 -3.80 16 21 C -0.12 -2.27 7.74 31.21 0.24 -2.03 16 22 C -0.11 -2.09 7.11 31.12 0.22 -1.87 16 23 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 24 H 0.09 1.72 6.57 -2.39 -0.02 1.70 16 25 H 0.07 1.74 6.57 -2.39 -0.02 1.72 16 26 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.05 1.25 7.40 -2.39 -0.02 1.23 16 28 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.09 2.23 8.12 -2.39 -0.02 2.21 16 30 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 35 H 0.08 3.42 4.35 -2.39 -0.01 3.41 16 36 H 0.00 0.02 7.73 -2.39 -0.02 0.00 16 37 H 0.06 1.86 6.26 -2.39 -0.01 1.85 16 38 H 0.08 2.17 6.10 -2.39 -0.01 2.16 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.09 1.53 7.73 -2.38 -0.02 1.51 16 41 H 0.09 1.55 6.10 -2.39 -0.01 1.53 16 42 H 0.09 1.41 8.10 -2.39 -0.02 1.39 16 Total: -1.00 -68.48 319.45 2.22 -66.26 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.95 Total: 13.74 kcal Atomic # 6 Polarization: -40.77 SS G_CDS: 3.89 Total: -36.88 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -3.35 Total: -82.59 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 1.85 Total: 49.04 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.12 Total: -9.58 kcal Total: -68.48 2.22 -66.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597177454.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.776 kcal (2) G-P(sol) polarization free energy of solvation -68.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds