Wall clock time and date at job start Mon Mar 30 2020 00:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46891 * 111.00441 * 2 1 4 4 C 1.50704 * 109.47343 * 81.82292 * 3 2 1 5 5 C 1.28874 * 121.25289 * 98.46515 * 4 3 2 6 6 C 1.51429 * 117.49785 * 179.97438 * 5 4 3 7 7 S 1.83841 * 102.53910 * 16.28789 * 6 5 4 8 8 C 1.51431 * 121.24662 * 278.18587 * 4 3 2 9 9 C 1.46903 * 110.99960 * 236.03996 * 2 1 3 10 10 C 1.52996 * 109.47502 * 280.36809 * 9 2 1 11 11 C 1.53000 * 109.47073 * 305.86122 * 10 9 2 12 12 C 1.53004 * 109.47050 * 65.85795 * 10 9 2 13 13 C 1.52997 * 109.47416 * 185.85980 * 10 9 2 14 14 C 1.50698 * 109.47526 * 179.97438 * 13 10 9 15 15 H 1.08006 * 119.99763 * 0.02562 * 14 13 10 16 16 C 1.37872 * 120.00311 * 180.02562 * 14 13 10 17 17 N 1.31514 * 120.00017 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99716 * 359.97438 * 16 14 13 19 19 H 1.48492 * 109.46951 * 90.00664 * 18 16 14 20 20 H 1.48500 * 109.46949 * 210.00217 * 18 16 14 21 21 H 1.48497 * 109.47379 * 330.00050 * 18 16 14 22 22 H 1.08998 * 109.47274 * 87.48114 * 1 2 3 23 23 H 1.08999 * 109.47634 * 207.48990 * 1 2 3 24 24 H 1.09006 * 109.46963 * 327.48744 * 1 2 3 25 25 H 1.09002 * 109.47614 * 201.82274 * 3 2 1 26 26 H 1.09002 * 109.47547 * 321.81800 * 3 2 1 27 27 H 1.08000 * 121.24992 * 359.97438 * 5 4 3 28 28 H 1.08999 * 110.79011 * 134.54520 * 6 5 4 29 29 H 1.08991 * 110.79774 * 257.83391 * 6 5 4 30 30 H 1.09004 * 110.79586 * 281.97347 * 8 4 3 31 31 H 1.08998 * 110.79343 * 45.44911 * 8 4 3 32 32 H 1.09000 * 109.47009 * 40.37334 * 9 2 1 33 33 H 1.09003 * 109.46608 * 160.36557 * 9 2 1 34 34 H 1.09007 * 109.46864 * 60.00100 * 11 10 9 35 35 H 1.09003 * 109.46969 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.47171 * 299.99902 * 11 10 9 37 37 H 1.09005 * 109.46734 * 40.00221 * 12 10 9 38 38 H 1.09002 * 109.47201 * 159.99919 * 12 10 9 39 39 H 1.08994 * 109.47196 * 280.00393 * 12 10 9 40 40 H 1.09001 * 109.47315 * 300.00312 * 13 10 9 41 41 H 1.08998 * 109.46914 * 60.00045 * 13 10 9 42 42 H 0.97005 * 119.99470 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9869 1.9128 1.4064 5 6 3.0520 1.9063 2.1318 6 6 2.9473 2.4720 3.5326 7 16 1.1308 2.5098 3.8131 8 6 0.7278 2.4905 2.0180 9 6 1.9954 -0.7661 -1.1375 10 6 1.9358 -2.2610 -0.8171 11 6 2.6567 -2.5281 0.5058 12 6 0.4747 -2.6994 -0.6992 13 6 2.6164 -3.0503 -1.9372 14 6 2.5583 -4.5226 -1.6212 15 1 2.0830 -4.8615 -0.7125 16 6 3.1118 -5.4370 -2.4921 17 7 3.0606 -6.7219 -2.2166 18 14 3.9331 -4.8507 -4.0642 19 1 5.3734 -4.5984 -3.8057 20 1 3.7936 -5.8921 -5.1136 21 1 3.2852 -3.5958 -4.5230 22 1 -0.3634 0.0452 -1.0266 23 1 -0.3634 -0.9116 0.4743 24 1 -0.3633 0.8667 0.5524 25 1 3.0163 1.3686 -0.3820 26 1 1.3716 2.0001 -0.6353 27 1 3.9843 1.5124 1.7549 28 1 3.4364 1.8157 4.2524 29 1 3.3697 3.4758 3.5772 30 1 0.5467 3.5003 1.6496 31 1 -0.1290 1.8461 1.8210 32 1 1.3947 -0.5602 -2.0234 33 1 3.0292 -0.4754 -1.3240 34 1 2.1718 -1.9657 1.3038 35 1 2.6139 -3.5930 0.7343 36 1 3.6976 -2.2157 0.4218 37 1 -0.1162 -2.2055 -1.4706 38 1 0.4082 -3.7799 -0.8266 39 1 0.0912 -2.4252 0.2835 40 1 2.1028 -2.8600 -2.8796 41 1 3.6573 -2.7379 -2.0211 42 1 3.4504 -7.3651 -2.8292 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597245606.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:08 Heat of formation + Delta-G solvation = 20.482984 kcal Electronic energy + Delta-G solvation = -19167.713689 eV Core-core repulsion = 16467.339611 eV Total energy + Delta-G solvation = -2700.374078 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.93773 -37.07797 -34.59213 -32.15817 -29.74901 -28.52403 -27.62911 -26.92247 -26.08020 -24.52345 -22.92173 -21.27568 -18.63024 -17.85519 -16.77350 -16.69266 -15.78808 -15.61573 -14.90618 -14.58020 -14.17355 -13.90753 -13.52963 -13.19140 -12.99195 -12.76793 -12.70118 -12.55854 -12.15112 -12.07020 -11.71085 -11.44474 -11.34524 -10.93131 -10.83584 -10.71300 -10.57652 -10.32385 -10.27996 -9.76028 -9.64012 -9.36000 -9.10776 -8.91425 -8.48964 -8.07816 -7.90791 -5.99143 -3.95026 1.62802 1.72525 2.15800 3.31860 3.39659 3.42510 4.15553 4.28454 4.48546 4.59134 4.92016 5.04243 5.05455 5.12474 5.20748 5.30362 5.34066 5.44139 5.49799 5.59083 5.71598 5.74279 5.92758 6.04266 6.10051 6.20827 6.27218 6.49306 6.53084 6.66318 6.74102 6.84422 7.11043 7.17263 7.20285 7.24302 7.34678 7.40511 7.53021 7.86549 8.61204 9.07223 9.63962 11.14007 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034540 B = 0.003945 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.467899 B = 7096.454049 C = 7122.105947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.527 5.527 3 C 0.098 3.902 4 C -0.110 4.110 5 C -0.152 4.152 6 C -0.038 4.038 7 S -0.295 6.295 8 C -0.037 4.037 9 C 0.063 3.937 10 C -0.043 4.043 11 C -0.114 4.114 12 C -0.137 4.137 13 C -0.004 4.004 14 C -0.506 4.506 15 H 0.078 0.922 16 C 0.065 3.935 17 N -0.906 5.906 18 Si 0.875 3.125 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.267 1.267 22 H 0.030 0.970 23 H 0.083 0.917 24 H 0.055 0.945 25 H 0.081 0.919 26 H 0.043 0.957 27 H 0.138 0.862 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.032 0.968 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.058 0.942 36 H 0.035 0.965 37 H 0.033 0.967 38 H 0.072 0.928 39 H 0.045 0.955 40 H 0.011 0.989 41 H 0.009 0.991 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.551 20.189 6.675 21.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.250 5.250 3 C -0.031 4.031 4 C -0.112 4.112 5 C -0.172 4.172 6 C -0.185 4.185 7 S -0.069 6.069 8 C -0.184 4.184 9 C -0.064 4.064 10 C -0.043 4.043 11 C -0.172 4.172 12 C -0.194 4.194 13 C -0.042 4.042 14 C -0.544 4.544 15 H 0.096 0.904 16 C -0.136 4.136 17 N -0.545 5.545 18 Si 0.703 3.297 19 H -0.205 1.205 20 H -0.216 1.216 21 H -0.192 1.192 22 H 0.048 0.952 23 H 0.101 0.899 24 H 0.074 0.926 25 H 0.099 0.901 26 H 0.062 0.938 27 H 0.155 0.845 28 H 0.126 0.874 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.130 0.870 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.030 0.970 41 H 0.027 0.973 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.061 19.825 8.073 21.623 hybrid contribution 0.948 0.542 -2.686 2.900 sum -2.114 20.367 5.387 21.173 Atomic orbital electron populations 1.22950 0.87673 1.02763 1.00149 1.61940 1.07684 1.10863 1.44518 1.20977 1.00868 0.89914 0.91347 1.21316 0.93559 0.98675 0.97658 1.22454 1.00008 1.00573 0.94145 1.23095 0.93324 1.04166 0.97941 1.88046 1.08345 1.98264 1.12216 1.23274 1.00104 1.03848 0.91213 1.22530 0.98777 0.95422 0.89637 1.20354 0.95943 0.90714 0.97336 1.21591 0.98356 1.01329 0.95898 1.22087 0.95248 1.03061 0.98972 1.19631 0.94712 0.96342 0.93520 1.21135 1.36656 0.88792 1.07797 0.90362 1.25014 0.95928 0.94814 0.97820 1.69913 1.46336 1.00911 1.37364 0.86855 0.80187 0.78655 0.83987 1.20478 1.21593 1.19222 0.95168 0.89874 0.92632 0.90089 0.93841 0.84468 0.87420 0.88329 0.88466 0.87019 0.94961 0.91707 0.93362 0.92346 0.94623 0.94752 0.90912 0.93622 0.97042 0.97312 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 8.36 60.06 0.50 0.65 16 2 N -0.53 -7.04 3.53 -244.38 -0.86 -7.90 16 3 C 0.10 1.07 5.25 -4.98 -0.03 1.05 16 4 C -0.11 -1.14 5.38 -100.14 -0.54 -1.68 16 5 C -0.15 -1.51 9.87 -35.10 -0.35 -1.85 16 6 C -0.04 -0.34 7.46 36.36 0.27 -0.07 16 7 S -0.30 -3.34 23.55 -107.50 -2.53 -5.87 16 8 C -0.04 -0.36 7.03 36.36 0.26 -0.11 16 9 C 0.06 1.00 4.17 -3.82 -0.02 0.98 16 10 C -0.04 -0.82 0.61 -154.51 -0.09 -0.91 16 11 C -0.11 -2.19 7.90 37.16 0.29 -1.90 16 12 C -0.14 -2.52 7.17 37.16 0.27 -2.26 16 13 C 0.00 -0.10 3.11 -27.89 -0.09 -0.18 16 14 C -0.51 -13.90 7.92 -34.44 -0.27 -14.17 16 15 H 0.08 2.31 6.11 -52.48 -0.32 1.99 16 16 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 17 N -0.91 -27.72 13.96 55.43 0.77 -26.95 16 18 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 22 H 0.03 0.37 7.34 -51.93 -0.38 -0.01 16 23 H 0.08 1.11 5.29 -51.93 -0.27 0.83 16 24 H 0.06 0.58 4.73 -51.93 -0.25 0.33 16 25 H 0.08 0.86 7.30 -51.93 -0.38 0.48 16 26 H 0.04 0.43 7.91 -51.93 -0.41 0.02 16 27 H 0.14 1.27 8.03 -52.49 -0.42 0.85 16 28 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.11 1.10 5.56 -51.93 -0.29 0.81 16 32 H 0.03 0.50 7.43 -51.93 -0.39 0.12 16 33 H 0.06 1.00 7.45 -51.93 -0.39 0.61 16 34 H 0.05 0.86 7.44 -51.93 -0.39 0.47 16 35 H 0.06 1.26 6.62 -51.93 -0.34 0.92 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.03 0.58 7.40 -51.93 -0.38 0.20 16 38 H 0.07 1.56 6.24 -51.93 -0.32 1.24 16 39 H 0.04 0.76 5.70 -51.93 -0.30 0.47 16 40 H 0.01 0.27 7.20 -51.93 -0.37 -0.11 16 41 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 325.16 15.07 4.90 4.90 Total: -1.00 -29.90 325.16 -9.13 -39.03 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.85 Total: -1.48 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 0.11 Total: -18.70 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: -0.09 Total: -34.85 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -2.53 Total: -5.87 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.90 -9.13 -39.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597245606.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.516 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds