Wall clock time and date at job start Mon Mar 30 2020 00:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46891 * 111.00441 * 2 1 4 4 C 1.50704 * 109.47343 * 81.82292 * 3 2 1 5 5 C 1.28874 * 121.25289 * 98.46515 * 4 3 2 6 6 C 1.51429 * 117.49785 * 179.97438 * 5 4 3 7 7 S 1.83841 * 102.53910 * 16.28789 * 6 5 4 8 8 C 1.51431 * 121.24662 * 278.18587 * 4 3 2 9 9 C 1.46903 * 110.99960 * 236.03996 * 2 1 3 10 10 C 1.52996 * 109.47502 * 280.36809 * 9 2 1 11 11 C 1.53000 * 109.47073 * 305.86122 * 10 9 2 12 12 C 1.53004 * 109.47050 * 65.85795 * 10 9 2 13 13 C 1.52997 * 109.47416 * 185.85980 * 10 9 2 14 14 C 1.50698 * 109.47526 * 179.97438 * 13 10 9 15 15 H 1.08006 * 119.99763 * 0.02562 * 14 13 10 16 16 C 1.37872 * 120.00311 * 180.02562 * 14 13 10 17 17 N 1.31514 * 120.00017 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99716 * 359.97438 * 16 14 13 19 19 H 1.48492 * 109.46951 * 90.00664 * 18 16 14 20 20 H 1.48500 * 109.46949 * 210.00217 * 18 16 14 21 21 H 1.48497 * 109.47379 * 330.00050 * 18 16 14 22 22 H 1.08998 * 109.47274 * 87.48114 * 1 2 3 23 23 H 1.08999 * 109.47634 * 207.48990 * 1 2 3 24 24 H 1.09006 * 109.46963 * 327.48744 * 1 2 3 25 25 H 1.09002 * 109.47614 * 201.82274 * 3 2 1 26 26 H 1.09002 * 109.47547 * 321.81800 * 3 2 1 27 27 H 1.08000 * 121.24992 * 359.97438 * 5 4 3 28 28 H 1.08999 * 110.79011 * 134.54520 * 6 5 4 29 29 H 1.08991 * 110.79774 * 257.83391 * 6 5 4 30 30 H 1.09004 * 110.79586 * 281.97347 * 8 4 3 31 31 H 1.08998 * 110.79343 * 45.44911 * 8 4 3 32 32 H 1.09000 * 109.47009 * 40.37334 * 9 2 1 33 33 H 1.09003 * 109.46608 * 160.36557 * 9 2 1 34 34 H 1.09007 * 109.46864 * 60.00100 * 11 10 9 35 35 H 1.09003 * 109.46969 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.47171 * 299.99902 * 11 10 9 37 37 H 1.09005 * 109.46734 * 40.00221 * 12 10 9 38 38 H 1.09002 * 109.47201 * 159.99919 * 12 10 9 39 39 H 1.08994 * 109.47196 * 280.00393 * 12 10 9 40 40 H 1.09001 * 109.47315 * 300.00312 * 13 10 9 41 41 H 1.08998 * 109.46914 * 60.00045 * 13 10 9 42 42 H 0.97005 * 119.99470 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9869 1.9128 1.4064 5 6 3.0520 1.9063 2.1318 6 6 2.9473 2.4720 3.5326 7 16 1.1308 2.5098 3.8131 8 6 0.7278 2.4905 2.0180 9 6 1.9954 -0.7661 -1.1375 10 6 1.9358 -2.2610 -0.8171 11 6 2.6567 -2.5281 0.5058 12 6 0.4747 -2.6994 -0.6992 13 6 2.6164 -3.0503 -1.9372 14 6 2.5583 -4.5226 -1.6212 15 1 2.0830 -4.8615 -0.7125 16 6 3.1118 -5.4370 -2.4921 17 7 3.0606 -6.7219 -2.2166 18 14 3.9331 -4.8507 -4.0642 19 1 5.3734 -4.5984 -3.8057 20 1 3.7936 -5.8921 -5.1136 21 1 3.2852 -3.5958 -4.5230 22 1 -0.3634 0.0452 -1.0266 23 1 -0.3634 -0.9116 0.4743 24 1 -0.3633 0.8667 0.5524 25 1 3.0163 1.3686 -0.3820 26 1 1.3716 2.0001 -0.6353 27 1 3.9843 1.5124 1.7549 28 1 3.4364 1.8157 4.2524 29 1 3.3697 3.4758 3.5772 30 1 0.5467 3.5003 1.6496 31 1 -0.1290 1.8461 1.8210 32 1 1.3947 -0.5602 -2.0234 33 1 3.0292 -0.4754 -1.3240 34 1 2.1718 -1.9657 1.3038 35 1 2.6139 -3.5930 0.7343 36 1 3.6976 -2.2157 0.4218 37 1 -0.1162 -2.2055 -1.4706 38 1 0.4082 -3.7799 -0.8266 39 1 0.0912 -2.4252 0.2835 40 1 2.1028 -2.8600 -2.8796 41 1 3.6573 -2.7379 -2.0211 42 1 3.4504 -7.3651 -2.8292 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597245606.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:07 Heat of formation + Delta-G solvation = 3.859254 kcal Electronic energy + Delta-G solvation = -19168.434548 eV Core-core repulsion = 16467.339611 eV Total energy + Delta-G solvation = -2701.094937 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.05064 -38.17544 -35.88660 -34.18709 -30.64867 -29.67865 -29.26759 -28.05238 -27.56666 -25.43071 -24.59734 -22.53637 -19.65701 -19.13939 -18.83215 -17.58334 -16.79423 -16.62548 -16.16580 -15.89757 -15.48083 -15.13135 -14.82904 -14.52207 -14.23175 -14.11648 -13.88906 -13.77814 -13.56233 -13.15246 -12.85458 -12.69464 -12.63433 -12.38351 -12.28602 -12.17808 -12.01960 -11.79962 -11.70284 -11.39191 -11.24762 -10.88612 -10.76989 -10.68105 -9.99896 -9.10781 -8.75288 -8.19967 -6.20126 0.86656 0.96506 1.37055 1.38714 1.41477 1.49684 2.41002 3.15056 3.16158 3.53797 3.81164 4.04133 4.17945 4.22363 4.30381 4.35778 4.42081 4.45717 4.49657 4.56364 4.67258 4.69414 4.75106 4.86049 4.91977 4.98467 5.05066 5.08092 5.14720 5.30314 5.36692 5.44219 5.49201 5.59520 5.66588 5.76864 5.79963 5.87546 6.19413 6.25307 6.44839 6.87332 7.42064 8.96519 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034540 B = 0.003945 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.467899 B = 7096.454049 C = 7122.105947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.537 5.537 3 C 0.101 3.899 4 C -0.119 4.119 5 C -0.152 4.152 6 C -0.027 4.027 7 S -0.350 6.350 8 C -0.025 4.025 9 C 0.075 3.925 10 C -0.044 4.044 11 C -0.102 4.102 12 C -0.128 4.128 13 C -0.002 4.002 14 C -0.502 4.502 15 H 0.041 0.959 16 C 0.000 4.000 17 N -0.957 5.957 18 Si 0.942 3.058 19 H -0.270 1.270 20 H -0.290 1.290 21 H -0.247 1.247 22 H 0.033 0.967 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.058 0.942 27 H 0.145 0.855 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.021 0.979 36 H 0.037 0.963 37 H 0.049 0.951 38 H 0.031 0.969 39 H 0.062 0.938 40 H 0.013 0.987 41 H 0.013 0.987 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.063 23.168 5.786 23.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.260 5.260 3 C -0.028 4.028 4 C -0.121 4.121 5 C -0.172 4.172 6 C -0.174 4.174 7 S -0.124 6.124 8 C -0.172 4.172 9 C -0.053 4.053 10 C -0.044 4.044 11 C -0.160 4.160 12 C -0.185 4.185 13 C -0.040 4.040 14 C -0.541 4.541 15 H 0.059 0.941 16 C -0.196 4.196 17 N -0.599 5.599 18 Si 0.767 3.233 19 H -0.195 1.195 20 H -0.216 1.216 21 H -0.171 1.171 22 H 0.052 0.948 23 H 0.087 0.913 24 H 0.093 0.907 25 H 0.105 0.895 26 H 0.077 0.923 27 H 0.163 0.837 28 H 0.131 0.869 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.040 0.960 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.081 0.919 40 H 0.031 0.969 41 H 0.031 0.969 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.581 22.834 7.196 24.080 hybrid contribution 0.765 -0.394 -2.291 2.447 sum -1.816 22.440 4.906 23.042 Atomic orbital electron populations 1.22932 0.87066 1.02994 1.00534 1.61801 1.08325 1.12503 1.43384 1.20990 1.01367 0.88473 0.91922 1.21327 0.93894 0.99309 0.97580 1.22644 1.00287 0.99990 0.94298 1.23166 0.91168 1.05398 0.97653 1.88258 1.11202 1.98385 1.14573 1.23279 0.99811 1.04784 0.89357 1.22250 0.99641 0.92799 0.90584 1.20299 0.95448 0.93136 0.95549 1.21458 0.98797 0.99040 0.96687 1.21989 0.95555 1.00365 1.00565 1.19587 0.95412 0.93899 0.95072 1.21433 1.35009 0.91430 1.06186 0.94068 1.25942 0.97066 0.94810 1.01768 1.70078 1.48293 1.02442 1.39051 0.85777 0.79416 0.78771 0.79359 1.19539 1.21626 1.17073 0.94807 0.91284 0.90692 0.89508 0.92336 0.83696 0.86887 0.86452 0.86811 0.87160 0.94418 0.90980 0.91841 0.95975 0.94360 0.93233 0.94966 0.91938 0.96899 0.96882 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 8.36 127.69 1.07 1.33 16 2 N -0.54 -12.69 3.53 -927.07 -3.27 -15.96 16 3 C 0.10 1.84 5.25 85.56 0.45 2.29 16 4 C -0.12 -2.10 5.38 -14.13 -0.08 -2.18 16 5 C -0.15 -2.58 9.87 28.00 0.28 -2.30 16 6 C -0.03 -0.42 7.46 71.47 0.53 0.11 16 7 S -0.35 -7.38 23.55 -56.49 -1.33 -8.71 16 8 C -0.03 -0.43 7.03 71.47 0.50 0.07 16 9 C 0.07 2.13 4.17 86.30 0.36 2.49 16 10 C -0.04 -1.61 0.61 -52.18 -0.03 -1.65 16 11 C -0.10 -3.88 7.90 71.98 0.57 -3.32 16 12 C -0.13 -4.67 7.17 71.98 0.52 -4.15 16 13 C 0.00 -0.08 3.11 29.85 0.09 0.01 16 14 C -0.50 -28.26 7.92 25.60 0.20 -28.06 16 15 H 0.04 2.57 6.11 -2.91 -0.02 2.55 16 16 C 0.00 -0.03 5.47 84.65 0.46 0.44 16 17 N -0.96 -60.43 13.96 21.45 0.30 -60.13 16 18 Si 0.94 44.37 27.47 68.60 1.88 46.26 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 21 H -0.25 -10.73 6.54 99.48 0.65 -10.08 16 22 H 0.03 0.71 7.34 -2.39 -0.02 0.70 16 23 H 0.07 1.69 5.29 -2.39 -0.01 1.67 16 24 H 0.07 1.32 4.73 -2.38 -0.01 1.31 16 25 H 0.09 1.50 7.30 -2.39 -0.02 1.48 16 26 H 0.06 0.92 7.91 -2.39 -0.02 0.90 16 27 H 0.15 2.24 8.03 -2.91 -0.02 2.21 16 28 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.11 1.89 5.56 -2.39 -0.01 1.87 16 32 H 0.04 1.04 7.43 -2.39 -0.02 1.03 16 33 H 0.07 1.96 7.45 -2.39 -0.02 1.94 16 34 H 0.06 2.18 7.44 -2.38 -0.02 2.17 16 35 H 0.02 0.96 6.62 -2.39 -0.02 0.95 16 36 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.05 1.62 7.40 -2.38 -0.02 1.60 16 38 H 0.03 1.41 6.24 -2.39 -0.01 1.40 16 39 H 0.06 2.05 5.70 -2.39 -0.01 2.03 16 40 H 0.01 0.58 7.20 -2.39 -0.02 0.56 16 41 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 42 H 0.26 15.55 8.31 -92.70 -0.77 14.78 16 Total: -1.00 -65.78 325.16 3.44 -62.34 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.93 Total: 11.13 kcal Atomic # 6 Polarization: -39.84 SS G_CDS: 4.92 Total: -34.91 kcal Atomic # 7 Polarization: -73.13 SS G_CDS: -2.97 Total: -76.10 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.88 Total: 46.26 kcal Atomic # 16 Polarization: -7.38 SS G_CDS: -1.33 Total: -8.71 kcal Total: -65.78 3.44 -62.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597245606.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.200 kcal (2) G-P(sol) polarization free energy of solvation -65.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds