Wall clock time and date at job start Mon Mar 30 2020 01:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47243 * 2 1 4 4 C 1.52998 * 109.47234 * 120.00477 * 2 1 3 5 5 C 1.50701 * 109.47011 * 295.00159 * 4 2 1 6 6 H 1.08008 * 120.00119 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00201 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99940 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00112 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47016 * 59.99948 * 9 7 5 11 11 H 1.48496 * 109.46944 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47184 * 300.00111 * 9 7 5 13 13 C 1.53004 * 109.47137 * 240.00434 * 2 1 3 14 14 N 1.46499 * 109.47198 * 65.00035 * 13 2 1 15 15 C 1.39312 * 119.99856 * 180.27898 * 14 13 2 16 16 C 1.37891 * 120.30444 * 359.44774 * 15 14 13 17 17 C 1.39149 * 120.74585 * 179.68540 * 16 15 14 18 18 C 1.36169 * 121.08689 * 0.61792 * 17 16 15 19 19 C 1.40513 * 119.96413 * 359.68615 * 18 17 16 20 20 C 1.40579 * 121.19821 * 180.02562 * 19 18 17 21 21 C 1.36096 * 119.65946 * 179.97438 * 20 19 18 22 22 C 1.39342 * 120.97911 * 0.02684 * 21 20 19 23 23 C 1.36159 * 120.95900 * 359.92868 * 22 21 20 24 24 C 1.40356 * 119.67063 * 0.09196 * 23 22 21 25 25 H 1.08990 * 109.46949 * 299.99844 * 1 2 3 26 26 H 1.09000 * 109.46939 * 59.99651 * 1 2 3 27 27 H 1.09003 * 109.46857 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47047 * 54.99633 * 4 2 1 29 29 H 1.09000 * 109.47450 * 175.00009 * 4 2 1 30 30 H 0.96997 * 119.99735 * 180.02562 * 8 7 5 31 31 H 1.09009 * 109.46730 * 304.99822 * 13 2 1 32 32 H 1.08998 * 109.46846 * 185.00367 * 13 2 1 33 33 H 0.97001 * 119.99790 * 359.97438 * 14 13 2 34 34 H 1.07998 * 119.62164 * 359.97438 * 16 15 14 35 35 H 1.08002 * 119.45371 * 180.28606 * 17 16 15 36 36 H 1.07999 * 120.01984 * 179.70187 * 18 17 16 37 37 H 1.07994 * 120.16893 * 359.95784 * 20 19 18 38 38 H 1.08008 * 119.51313 * 180.02562 * 21 20 19 39 39 H 1.07998 * 119.52140 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.16679 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0569 2.4766 6 1 1.0806 0.9745 2.3757 7 6 1.9923 -0.4025 3.7283 8 7 2.6755 -1.5195 3.8511 9 14 1.4987 0.5625 5.2497 10 1 0.0188 0.6702 5.3090 11 1 1.9926 -0.1383 6.4622 12 1 2.0918 1.9225 5.1873 13 6 2.0401 -0.7212 -1.2493 14 7 1.6525 0.0355 -2.4424 15 6 2.0026 -0.4313 -3.7074 16 6 2.7237 -1.5987 -3.8433 17 6 3.0727 -2.0768 -5.1027 18 6 2.7243 -1.4013 -6.2325 19 6 1.9947 -0.2042 -6.1377 20 6 1.6209 0.5138 -7.2870 21 6 0.9139 1.6696 -7.1588 22 6 0.5539 2.1546 -5.9031 23 6 0.8980 1.4850 -4.7686 24 6 1.6277 0.2896 -4.8616 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6054 -1.7199 1.2950 29 1 3.1264 -0.7996 1.2055 30 1 2.9221 -1.8428 4.7317 31 1 1.6054 -1.7198 -1.2952 32 1 3.1264 -0.7994 -1.2056 33 1 1.1483 0.8592 -2.3517 34 1 3.0168 -2.1507 -2.9626 35 1 3.6338 -2.9959 -5.1851 36 1 3.0084 -1.7856 -7.2010 37 1 1.8937 0.1502 -8.2667 38 1 0.6276 2.2191 -8.0435 39 1 -0.0069 3.0745 -5.8287 40 1 0.6120 1.8723 -3.8019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602588505.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:06 Heat of formation + Delta-G solvation = 22.088011 kcal Electronic energy + Delta-G solvation = -19354.791956 eV Core-core repulsion = 16519.043525 eV Total energy + Delta-G solvation = -2835.748430 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.38677 -37.47637 -35.97524 -34.28686 -32.37295 -30.96442 -30.23404 -28.29597 -26.88482 -25.85528 -23.39969 -23.18656 -22.44858 -20.83950 -19.43960 -17.64535 -17.26085 -16.51196 -16.15635 -15.28934 -14.86133 -14.60305 -14.48376 -14.00640 -13.84591 -13.64843 -13.15891 -12.88464 -12.73934 -12.37851 -12.17352 -11.90441 -11.62396 -11.29305 -10.96667 -10.94532 -10.91154 -10.81508 -10.46605 -10.40112 -10.30452 -9.87281 -9.36045 -9.10605 -8.82846 -8.56454 -8.40327 -6.91804 -6.04973 -4.07192 0.74225 1.10122 2.23257 3.13170 3.29707 3.34779 3.36398 3.59239 4.24521 4.41814 4.68734 4.81776 4.90865 5.02982 5.27668 5.30842 5.39827 5.42451 5.47896 5.57498 5.62306 5.69605 5.86154 5.97835 6.04060 6.13426 6.19809 6.31476 6.34862 6.37011 6.47615 6.53472 6.70632 6.78728 6.86817 6.94342 6.98343 7.05872 7.48527 7.57524 7.70898 7.85230 7.93136 8.35254 8.98126 9.56752 11.06387 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033742 B = 0.003452 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.627688 B = 8109.842800 C = 8796.965439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.097 4.097 3 H 0.062 0.938 4 C 0.031 3.969 5 C -0.518 4.518 6 H 0.056 0.944 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.123 3.877 14 N -0.730 5.730 15 C 0.241 3.759 16 C -0.230 4.230 17 C -0.050 4.050 18 C -0.192 4.192 19 C -0.006 4.006 20 C -0.122 4.122 21 C -0.108 4.108 22 C -0.142 4.142 23 C -0.087 4.087 24 C -0.104 4.104 25 H 0.064 0.936 26 H 0.029 0.971 27 H 0.047 0.953 28 H 0.019 0.981 29 H 0.018 0.982 30 H 0.261 0.739 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.397 0.603 34 H 0.123 0.877 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.274 3.145 -20.307 20.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.116 4.116 3 H 0.081 0.919 4 C -0.006 4.006 5 C -0.557 4.557 6 H 0.074 0.926 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C 0.000 4.000 14 N -0.355 5.355 15 C 0.133 3.867 16 C -0.255 4.255 17 C -0.069 4.069 18 C -0.212 4.212 19 C -0.007 4.007 20 C -0.140 4.140 21 C -0.126 4.126 22 C -0.160 4.160 23 C -0.106 4.106 24 C -0.107 4.107 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.233 0.767 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.141 2.920 -19.947 20.273 hybrid contribution -0.410 0.761 1.017 1.334 sum -2.551 3.681 -18.930 19.453 Atomic orbital electron populations 1.21731 0.95878 1.01200 1.00176 1.21461 0.95672 0.99839 0.94589 0.91946 1.19069 0.96286 0.95543 0.89742 1.21146 1.35206 1.08389 0.90918 0.92609 1.25010 0.95184 0.95068 0.99128 1.69945 1.38671 1.21095 1.23676 0.86671 0.78891 0.80109 0.82416 1.20256 1.21285 1.20260 1.21721 0.99393 0.95272 0.83593 1.45056 1.60021 1.27671 1.02780 1.17880 0.91800 0.92279 0.84698 1.20490 1.08133 0.98645 0.98216 1.20520 0.96299 0.98226 0.91828 1.20586 1.05333 0.96808 0.98471 1.17843 0.96315 0.94705 0.91804 1.20966 0.99832 0.95758 0.97485 1.20798 0.98188 0.96327 0.97322 1.20679 1.02275 1.00609 0.92442 1.20821 0.97019 0.94124 0.98617 1.17727 1.03874 0.97000 0.92111 0.91653 0.95221 0.93364 0.96262 0.96405 0.92891 0.92214 0.92138 0.76678 0.85859 0.86453 0.86449 0.85894 0.86413 0.86343 0.86340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.88 37.16 0.33 -2.02 16 2 C -0.10 -1.84 2.37 -90.62 -0.22 -2.05 16 3 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 4 C 0.03 0.76 4.45 -27.88 -0.12 0.64 16 5 C -0.52 -14.02 8.41 -34.44 -0.29 -14.31 16 6 H 0.06 1.46 7.06 -52.48 -0.37 1.09 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 9 Si 0.89 21.24 29.54 -169.99 -5.02 16.21 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.12 2.03 4.30 -4.04 -0.02 2.02 16 14 N -0.73 -10.68 5.39 -58.38 -0.31 -10.99 16 15 C 0.24 3.55 6.67 -83.48 -0.56 2.99 16 16 C -0.23 -3.27 9.29 -39.37 -0.37 -3.64 16 17 C -0.05 -0.62 9.94 -39.99 -0.40 -1.02 16 18 C -0.19 -2.33 9.75 -39.47 -0.38 -2.71 16 19 C -0.01 -0.08 5.74 -106.85 -0.61 -0.69 16 20 C -0.12 -1.34 9.77 -39.47 -0.39 -1.73 16 21 C -0.11 -1.10 9.95 -39.94 -0.40 -1.50 16 22 C -0.14 -1.53 9.95 -39.92 -0.40 -1.92 16 23 C -0.09 -1.08 9.50 -39.53 -0.38 -1.45 16 24 C -0.10 -1.46 5.75 -106.69 -0.61 -2.07 16 25 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 26 H 0.03 0.44 7.18 -51.93 -0.37 0.07 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.06 0.99 7.95 -51.92 -0.41 0.58 16 32 H 0.06 1.02 7.94 -51.93 -0.41 0.61 16 33 H 0.40 5.35 5.76 -40.82 -0.24 5.12 16 34 H 0.12 1.73 6.69 -52.49 -0.35 1.38 16 35 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.12 1.30 6.44 -52.49 -0.34 0.97 16 LS Contribution 326.82 15.07 4.93 4.93 Total: -1.00 -29.47 326.82 -10.37 -39.84 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -5.79 Total: 3.57 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: -4.90 Total: -27.98 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.42 Total: -36.57 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.47 -10.37 -39.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602588505.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.927 kcal (2) G-P(sol) polarization free energy of solvation -29.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds