Wall clock time and date at job start Mon Mar 30 2020 01:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47243 * 2 1 4 4 C 1.52998 * 109.47234 * 120.00477 * 2 1 3 5 5 C 1.50701 * 109.47011 * 295.00159 * 4 2 1 6 6 H 1.08008 * 120.00119 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00201 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99940 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00112 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47016 * 59.99948 * 9 7 5 11 11 H 1.48496 * 109.46944 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47184 * 300.00111 * 9 7 5 13 13 C 1.53004 * 109.47137 * 240.00434 * 2 1 3 14 14 N 1.46499 * 109.47198 * 65.00035 * 13 2 1 15 15 C 1.39312 * 119.99856 * 180.27898 * 14 13 2 16 16 C 1.37891 * 120.30444 * 359.44774 * 15 14 13 17 17 C 1.39149 * 120.74585 * 179.68540 * 16 15 14 18 18 C 1.36169 * 121.08689 * 0.61792 * 17 16 15 19 19 C 1.40513 * 119.96413 * 359.68615 * 18 17 16 20 20 C 1.40579 * 121.19821 * 180.02562 * 19 18 17 21 21 C 1.36096 * 119.65946 * 179.97438 * 20 19 18 22 22 C 1.39342 * 120.97911 * 0.02684 * 21 20 19 23 23 C 1.36159 * 120.95900 * 359.92868 * 22 21 20 24 24 C 1.40356 * 119.67063 * 0.09196 * 23 22 21 25 25 H 1.08990 * 109.46949 * 299.99844 * 1 2 3 26 26 H 1.09000 * 109.46939 * 59.99651 * 1 2 3 27 27 H 1.09003 * 109.46857 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47047 * 54.99633 * 4 2 1 29 29 H 1.09000 * 109.47450 * 175.00009 * 4 2 1 30 30 H 0.96997 * 119.99735 * 180.02562 * 8 7 5 31 31 H 1.09009 * 109.46730 * 304.99822 * 13 2 1 32 32 H 1.08998 * 109.46846 * 185.00367 * 13 2 1 33 33 H 0.97001 * 119.99790 * 359.97438 * 14 13 2 34 34 H 1.07998 * 119.62164 * 359.97438 * 16 15 14 35 35 H 1.08002 * 119.45371 * 180.28606 * 17 16 15 36 36 H 1.07999 * 120.01984 * 179.70187 * 18 17 16 37 37 H 1.07994 * 120.16893 * 359.95784 * 20 19 18 38 38 H 1.08008 * 119.51313 * 180.02562 * 21 20 19 39 39 H 1.07998 * 119.52140 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.16679 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0569 2.4766 6 1 1.0806 0.9745 2.3757 7 6 1.9923 -0.4025 3.7283 8 7 2.6755 -1.5195 3.8511 9 14 1.4987 0.5625 5.2497 10 1 0.0188 0.6702 5.3090 11 1 1.9926 -0.1383 6.4622 12 1 2.0918 1.9225 5.1873 13 6 2.0401 -0.7212 -1.2493 14 7 1.6525 0.0355 -2.4424 15 6 2.0026 -0.4313 -3.7074 16 6 2.7237 -1.5987 -3.8433 17 6 3.0727 -2.0768 -5.1027 18 6 2.7243 -1.4013 -6.2325 19 6 1.9947 -0.2042 -6.1377 20 6 1.6209 0.5138 -7.2870 21 6 0.9139 1.6696 -7.1588 22 6 0.5539 2.1546 -5.9031 23 6 0.8980 1.4850 -4.7686 24 6 1.6277 0.2896 -4.8616 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6054 -1.7199 1.2950 29 1 3.1264 -0.7996 1.2055 30 1 2.9221 -1.8428 4.7317 31 1 1.6054 -1.7198 -1.2952 32 1 3.1264 -0.7994 -1.2056 33 1 1.1483 0.8592 -2.3517 34 1 3.0168 -2.1507 -2.9626 35 1 3.6338 -2.9959 -5.1851 36 1 3.0084 -1.7856 -7.2010 37 1 1.8937 0.1502 -8.2667 38 1 0.6276 2.2191 -8.0435 39 1 -0.0069 3.0745 -5.8287 40 1 0.6120 1.8723 -3.8019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602588505.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:06 Heat of formation + Delta-G solvation = 8.015426 kcal Electronic energy + Delta-G solvation = -19355.402189 eV Core-core repulsion = 16519.043525 eV Total energy + Delta-G solvation = -2836.358664 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.33053 -38.70408 -37.11140 -35.69239 -34.18820 -32.08460 -31.14802 -29.52330 -28.58486 -27.23771 -24.97927 -24.14399 -23.61837 -21.86631 -20.99683 -18.67298 -18.60465 -18.07365 -17.25591 -16.58204 -16.25238 -16.10072 -15.74409 -14.97771 -14.87215 -14.74461 -14.44954 -14.31525 -14.02912 -13.81846 -13.47059 -13.30890 -12.83477 -12.78747 -12.71664 -12.32060 -12.27035 -12.06845 -11.82410 -11.70982 -11.67598 -11.26897 -11.18282 -11.06474 -10.54617 -9.80492 -9.49556 -8.19005 -7.95590 -6.28404 -0.16505 0.17159 1.28088 1.40382 1.42464 1.50168 2.22812 2.37143 2.46855 3.15022 3.29885 3.82445 3.89004 4.04217 4.06808 4.13637 4.20545 4.32742 4.46823 4.49793 4.59763 4.63126 4.72399 4.76356 4.80933 4.88784 5.06397 5.15211 5.20116 5.26532 5.31823 5.41734 5.44113 5.49545 5.60674 5.63164 5.73393 5.78163 5.84232 5.92457 6.14879 6.24447 6.38447 6.76932 6.87194 7.40099 8.92875 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033742 B = 0.003452 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.627688 B = 8109.842800 C = 8796.965439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.085 4.085 3 H 0.063 0.937 4 C 0.035 3.965 5 C -0.532 4.532 6 H 0.063 0.937 7 C -0.001 4.001 8 N -0.934 5.934 9 Si 0.960 3.040 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.141 3.859 14 N -0.729 5.729 15 C 0.221 3.779 16 C -0.246 4.246 17 C -0.064 4.064 18 C -0.185 4.185 19 C -0.029 4.029 20 C -0.125 4.125 21 C -0.109 4.109 22 C -0.137 4.137 23 C -0.110 4.110 24 C -0.121 4.121 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.041 0.959 28 H -0.006 1.006 29 H -0.009 1.009 30 H 0.262 0.738 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.403 0.597 34 H 0.114 0.886 35 H 0.138 0.862 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.143 0.857 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.297 4.763 -22.359 23.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.104 4.104 3 H 0.082 0.918 4 C -0.002 4.002 5 C -0.570 4.570 6 H 0.081 0.919 7 C -0.198 4.198 8 N -0.575 5.575 9 Si 0.785 3.215 10 H -0.192 1.192 11 H -0.212 1.212 12 H -0.193 1.193 13 C 0.017 3.983 14 N -0.357 5.357 15 C 0.114 3.886 16 C -0.271 4.271 17 C -0.083 4.083 18 C -0.205 4.205 19 C -0.030 4.030 20 C -0.143 4.143 21 C -0.127 4.127 22 C -0.155 4.155 23 C -0.128 4.128 24 C -0.123 4.123 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.013 0.987 29 H 0.009 0.991 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.240 0.760 34 H 0.132 0.868 35 H 0.156 0.844 36 H 0.162 0.838 37 H 0.167 0.833 38 H 0.167 0.833 39 H 0.161 0.839 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.172 4.550 -22.034 22.721 hybrid contribution -0.086 0.274 1.496 1.523 sum -3.258 4.825 -20.538 21.347 Atomic orbital electron populations 1.21639 0.94474 1.01104 1.01022 1.21217 0.96711 0.99209 0.93261 0.91843 1.18942 0.94493 0.94768 0.92020 1.21590 1.34766 1.08692 0.91937 0.91856 1.25931 0.95207 0.96055 1.02631 1.70087 1.40086 1.22873 1.24414 0.85572 0.78943 0.78765 0.78212 1.19183 1.21158 1.19282 1.21308 0.98583 0.94897 0.83532 1.44755 1.60886 1.27843 1.02201 1.18033 0.92797 0.92912 0.84813 1.20650 1.08648 0.98890 0.98899 1.20763 0.96914 0.99279 0.91324 1.20950 1.03934 0.96198 0.99422 1.18215 0.96956 0.95502 0.92307 1.21306 0.99391 0.95770 0.97857 1.21213 0.97154 0.96116 0.98221 1.21070 1.01207 1.00981 0.92234 1.20999 0.97867 0.94189 0.99753 1.17956 1.04477 0.97723 0.92188 0.93066 0.91989 0.93938 0.98721 0.99085 0.92891 0.92739 0.93174 0.76048 0.86768 0.84417 0.83829 0.83327 0.83289 0.83950 0.85742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 8.88 71.98 0.64 -3.76 16 2 C -0.09 -3.30 2.37 -10.79 -0.03 -3.33 16 3 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 4 C 0.04 1.80 4.45 29.85 0.13 1.93 16 5 C -0.53 -29.27 8.41 25.60 0.22 -29.06 16 6 H 0.06 3.32 7.06 -2.91 -0.02 3.30 16 7 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 8 N -0.93 -56.42 13.29 21.45 0.28 -56.13 16 9 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 11 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 13 C 0.14 4.80 4.30 86.38 0.37 5.17 16 14 N -0.73 -21.50 5.39 -338.62 -1.82 -23.32 16 15 C 0.22 6.54 6.67 38.58 0.26 6.79 16 16 C -0.25 -7.16 9.29 22.41 0.21 -6.95 16 17 C -0.06 -1.57 9.94 22.01 0.22 -1.35 16 18 C -0.19 -4.18 9.75 22.34 0.22 -3.96 16 19 C -0.03 -0.72 5.74 -21.31 -0.12 -0.84 16 20 C -0.13 -2.37 9.77 22.34 0.22 -2.15 16 21 C -0.11 -1.84 9.95 22.04 0.22 -1.62 16 22 C -0.14 -2.57 9.95 22.05 0.22 -2.35 16 23 C -0.11 -2.55 9.50 22.30 0.21 -2.34 16 24 C -0.12 -3.28 5.75 -21.20 -0.12 -3.40 16 25 H 0.05 1.93 6.95 -2.39 -0.02 1.91 16 26 H 0.06 1.77 7.18 -2.39 -0.02 1.75 16 27 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 28 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 29 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 30 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 31 H 0.05 1.90 7.95 -2.38 -0.02 1.88 16 32 H 0.05 1.79 7.94 -2.39 -0.02 1.77 16 33 H 0.40 10.67 5.76 -92.71 -0.53 10.14 16 34 H 0.11 3.40 6.69 -2.91 -0.02 3.38 16 35 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 36 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 39 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 40 H 0.12 2.60 6.44 -2.91 -0.02 2.58 16 Total: -1.00 -64.56 326.82 4.30 -60.26 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.49 Total: 20.19 kcal Atomic # 6 Polarization: -50.10 SS G_CDS: 3.32 Total: -46.78 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -1.54 Total: -79.46 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -64.56 4.30 -60.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602588505.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.277 kcal (2) G-P(sol) polarization free energy of solvation -64.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds