Wall clock time and date at job start Mon Mar 30 2020 01:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00372 * 2 1 4 4 H 1.48497 * 109.47176 * 245.00243 * 3 2 1 5 5 H 1.48502 * 109.47078 * 5.00507 * 3 2 1 6 6 H 1.48507 * 109.46785 * 125.00289 * 3 2 1 7 7 C 1.37880 * 119.99531 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99905 * 162.99855 * 7 2 1 9 9 C 1.50699 * 120.00252 * 342.99828 * 7 2 1 10 10 C 1.52999 * 115.54631 * 325.88342 * 9 7 2 11 11 N 1.46904 * 109.47354 * 282.90694 * 10 9 7 12 12 C 1.46852 * 110.99721 * 308.63248 * 11 10 9 13 13 C 1.53040 * 109.52150 * 174.16065 * 12 11 10 14 14 C 1.53119 * 109.30973 * 59.15538 * 13 12 11 15 15 C 1.53116 * 109.16293 * 302.40409 * 14 13 12 16 16 H 1.08995 * 109.50300 * 297.63955 * 15 14 13 17 17 O 1.42895 * 109.50523 * 177.55303 * 15 14 13 18 18 C 1.42905 * 113.99594 * 90.07969 * 17 15 14 19 19 C 1.53001 * 109.46935 * 179.97438 * 18 17 15 20 20 O 1.42902 * 109.47189 * 65.00471 * 19 18 17 21 21 C 1.46839 * 111.00162 * 184.42258 * 11 10 9 22 22 C 1.52994 * 117.51832 * 111.58553 * 9 7 2 23 23 C 1.52996 * 117.49817 * 180.21710 * 9 7 2 24 24 H 0.97001 * 119.99866 * 5.01241 * 1 2 3 25 25 H 1.09003 * 109.47032 * 162.90792 * 10 9 7 26 26 H 1.08997 * 109.47384 * 42.90582 * 10 9 7 27 27 H 1.09006 * 109.46199 * 294.17592 * 12 11 10 28 28 H 1.09003 * 109.46401 * 54.14506 * 12 11 10 29 29 H 1.09000 * 109.49957 * 179.12402 * 13 12 11 30 30 H 1.09002 * 109.50146 * 299.19396 * 13 12 11 31 31 H 1.09004 * 109.55149 * 182.47693 * 14 13 12 32 32 H 1.09007 * 109.49179 * 62.29286 * 14 13 12 33 33 H 1.08992 * 109.47279 * 60.00419 * 18 17 15 34 34 H 1.08996 * 109.47089 * 300.00164 * 18 17 15 35 35 H 1.08999 * 109.47483 * 305.00329 * 19 18 17 36 36 H 1.08999 * 109.47064 * 184.99992 * 19 18 17 37 37 H 0.96697 * 114.00178 * 180.02562 * 20 19 18 38 38 H 1.08998 * 109.46445 * 65.82529 * 21 11 10 39 39 H 1.08998 * 109.45540 * 305.85142 * 21 11 10 40 40 H 1.09010 * 117.49417 * 214.97184 * 22 9 7 41 41 H 1.08990 * 117.50075 * 359.97438 * 22 9 7 42 42 H 1.08997 * 117.50162 * 359.97036 * 23 9 7 43 43 H 1.09000 * 117.49964 * 144.97444 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0090 1.7505 -1.2689 5 1 1.2888 2.7438 0.1221 6 1 3.1922 1.6447 1.1469 7 6 2.0044 -1.1941 -0.0005 8 1 3.0490 -1.2145 -0.2740 9 6 1.3002 -2.4709 0.3805 10 6 0.2199 -2.3331 1.4551 11 7 0.8544 -2.2092 2.7743 12 6 1.8289 -3.2858 2.9928 13 6 2.5720 -3.0437 4.3085 14 6 1.5631 -3.0016 5.4596 15 6 0.5309 -1.9050 5.1833 16 1 1.0300 -0.9368 5.1454 17 8 -0.4473 -1.8972 6.2249 18 6 -0.1215 -1.0409 7.3217 19 6 -1.2328 -1.1110 8.3710 20 8 -1.2849 -2.4283 8.9224 21 6 -0.1531 -2.1801 3.8422 22 6 1.0733 -3.5086 -0.7205 23 6 2.1210 -3.7619 0.3653 24 1 -0.4850 0.8369 -0.0734 25 1 -0.4207 -3.2150 1.4415 26 1 -0.3799 -1.4452 1.2557 27 1 1.3086 -4.2425 3.0402 28 1 2.5434 -3.3015 2.1697 29 1 3.2843 -3.8512 4.4780 30 1 3.1044 -2.0940 4.2563 31 1 2.0833 -2.7857 6.3928 32 1 1.0592 -3.9651 5.5369 33 1 -0.0230 -0.0156 6.9654 34 1 0.8199 -1.3630 7.7669 35 1 -2.1889 -0.8745 7.9040 36 1 -1.0287 -0.3927 9.1650 37 1 -1.9687 -2.5460 9.5959 38 1 -0.6640 -3.1419 3.8857 39 1 -0.8781 -1.3928 3.6360 40 1 0.1542 -4.0933 -0.6792 41 1 1.4328 -3.2680 -1.7208 42 1 3.1702 -3.6880 0.0792 43 1 1.8916 -4.5131 1.1211 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602779593.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:36 Heat of formation + Delta-G solvation = -56.595943 kcal Electronic energy + Delta-G solvation = -21849.316736 eV Core-core repulsion = 18702.847394 eV Total energy + Delta-G solvation = -3146.469342 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.18927 -37.80702 -36.63453 -35.34971 -32.20067 -31.98392 -30.35670 -28.46657 -26.26510 -25.20272 -22.74920 -22.63264 -21.93461 -20.96214 -19.27618 -18.95549 -17.72901 -16.78313 -16.11234 -15.20361 -15.07245 -14.69516 -14.46143 -14.29674 -13.99320 -13.57399 -13.50909 -13.10079 -12.70446 -12.66752 -12.30433 -12.09581 -11.54011 -11.28532 -11.12634 -10.87413 -10.72204 -10.60633 -10.54647 -10.41081 -10.31273 -10.18093 -9.97181 -9.93881 -9.27412 -9.09122 -9.06414 -8.46212 -7.93794 -7.27373 -5.97544 -3.96865 3.33969 3.39416 3.44916 3.67501 4.11433 4.43873 4.79220 4.96346 5.08228 5.09344 5.17983 5.24740 5.32844 5.43128 5.51568 5.59904 5.65454 5.72148 5.87239 6.01485 6.11022 6.16328 6.20009 6.26961 6.33526 6.41989 6.44832 6.60136 6.64279 6.72556 6.77262 6.87587 6.98639 7.21801 7.35889 7.41755 7.50226 7.69566 8.05425 8.15989 8.21186 8.55110 8.95454 9.60510 11.03743 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019600 B = 0.005365 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.253267 B = 5217.830792 C = 5925.533219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.080 3.920 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.478 4.478 8 H 0.057 0.943 9 C 0.065 3.935 10 C 0.082 3.918 11 N -0.513 5.513 12 C 0.037 3.963 13 C -0.115 4.115 14 C -0.136 4.136 15 C 0.094 3.906 16 H 0.067 0.933 17 O -0.378 6.378 18 C 0.062 3.938 19 C 0.078 3.922 20 O -0.566 6.566 21 C 0.065 3.935 22 C -0.207 4.207 23 C -0.221 4.221 24 H 0.262 0.738 25 H -0.008 1.008 26 H 0.137 0.863 27 H 0.015 0.985 28 H 0.110 0.890 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.375 0.625 38 H 0.027 0.973 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.097 -2.257 14.020 14.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.122 4.122 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.514 4.514 8 H 0.076 0.924 9 C 0.064 3.936 10 C -0.044 4.044 11 N -0.238 5.238 12 C -0.091 4.091 13 C -0.153 4.153 14 C -0.174 4.174 15 C 0.036 3.964 16 H 0.085 0.915 17 O -0.296 6.296 18 C -0.015 4.015 19 C 0.001 3.999 20 O -0.370 6.370 21 C -0.063 4.063 22 C -0.245 4.245 23 C -0.259 4.259 24 H 0.072 0.928 25 H 0.010 0.990 26 H 0.154 0.846 27 H 0.033 0.967 28 H 0.128 0.872 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.222 0.778 38 H 0.045 0.955 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.691 -1.859 13.670 13.813 hybrid contribution -0.216 0.229 0.399 0.508 sum -0.907 -1.631 14.069 14.192 Atomic orbital electron populations 1.69654 1.06183 1.26750 1.48953 1.24830 0.94573 0.98869 0.93957 0.86671 0.79858 0.82980 0.78531 1.20636 1.21378 1.19963 1.20365 0.95981 0.89889 1.45208 0.92447 1.18940 0.94045 0.87872 0.92698 1.22149 0.95654 1.01778 0.84803 1.61774 1.15017 1.45081 1.01900 1.22748 0.96762 0.91481 0.98107 1.21594 0.97329 1.02001 0.94408 1.22042 0.97296 0.99647 0.98411 1.22105 0.88772 0.98487 0.86996 0.91464 1.87914 1.46201 1.66013 1.29494 1.22518 0.97413 0.94092 0.87473 1.22215 0.98825 0.84429 0.94469 1.86591 1.59953 1.30890 1.59605 1.21893 0.94343 1.00344 0.89768 1.23069 0.98329 1.07626 0.95497 1.23137 0.96362 1.03891 1.02465 0.92781 0.99033 0.84622 0.96683 0.87243 0.92106 0.91173 0.92611 0.91903 0.91906 0.92901 0.92744 0.92465 0.77831 0.95480 0.90642 0.92003 0.90480 0.90614 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.10 10.74 55.43 0.60 -23.50 16 2 C 0.08 2.15 5.16 -17.82 -0.09 2.06 16 3 Si 0.89 21.03 29.57 -169.99 -5.03 16.00 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.48 -12.90 9.02 -34.44 -0.31 -13.21 16 8 H 0.06 1.56 7.87 -52.49 -0.41 1.14 16 9 C 0.07 1.61 1.57 -155.67 -0.24 1.36 16 10 C 0.08 1.97 4.86 -3.82 -0.02 1.95 16 11 N -0.51 -11.02 4.77 -234.66 -1.12 -12.14 16 12 C 0.04 0.70 3.96 -3.83 -0.02 0.69 16 13 C -0.12 -1.88 6.09 -26.65 -0.16 -2.04 16 14 C -0.14 -2.14 5.62 -26.61 -0.15 -2.29 16 15 C 0.09 1.60 2.77 -26.65 -0.07 1.52 16 16 H 0.07 1.15 7.79 -51.93 -0.40 0.74 16 17 O -0.38 -6.18 9.96 -40.07 -0.40 -6.58 16 18 C 0.06 0.79 6.13 37.16 0.23 1.02 16 19 C 0.08 0.81 7.43 37.16 0.28 1.08 16 20 O -0.57 -6.47 13.62 -40.07 -0.55 -7.02 16 21 C 0.07 1.26 5.11 -3.84 -0.02 1.24 16 22 C -0.21 -4.76 9.88 -26.73 -0.26 -5.03 16 23 C -0.22 -4.78 7.24 -26.73 -0.19 -4.97 16 24 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 25 H -0.01 -0.20 7.97 -51.93 -0.41 -0.61 16 26 H 0.14 3.61 5.15 -51.93 -0.27 3.34 16 27 H 0.02 0.29 7.69 -51.93 -0.40 -0.11 16 28 H 0.11 2.24 4.31 -51.93 -0.22 2.02 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 0.79 7.94 -51.93 -0.41 0.38 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 34 H 0.05 0.66 7.94 -51.93 -0.41 0.24 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.38 2.32 9.12 45.56 0.42 2.74 16 38 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 1.50 8.12 -51.93 -0.42 1.08 16 40 H 0.06 1.36 8.11 -51.92 -0.42 0.94 16 41 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 42 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 43 H 0.07 1.46 6.08 -51.93 -0.32 1.14 16 LS Contribution 334.47 15.07 5.04 5.04 Total: -1.00 -29.81 334.47 -9.12 -38.93 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.63 Total: 5.88 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -1.04 Total: -16.61 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: -0.52 Total: -35.64 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.95 Total: -13.60 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.81 -9.12 -38.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602779593.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.664 kcal (2) G-P(sol) polarization free energy of solvation -29.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds