Wall clock time and date at job start Mon Mar 30 2020 00:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47431 * 2 1 4 4 C 1.52998 * 109.47732 * 120.00286 * 2 1 3 5 5 H 1.09005 * 109.62894 * 59.60483 * 4 2 1 6 6 C 1.53248 * 109.63517 * 179.97438 * 4 2 1 7 7 N 1.46466 * 109.85957 * 181.90575 * 6 4 2 8 8 C 1.46904 * 110.99737 * 162.23398 * 7 6 4 9 9 C 1.53006 * 109.46688 * 161.29929 * 8 7 6 10 10 C 1.50701 * 115.55069 * 290.55966 * 9 8 7 11 11 H 1.08001 * 119.99672 * 145.29684 * 10 9 8 12 12 C 1.37875 * 120.00169 * 325.30233 * 10 9 8 13 13 N 1.31512 * 120.00156 * 343.19382 * 12 10 9 14 14 Si 1.86799 * 119.99665 * 163.19318 * 12 10 9 15 15 H 1.48501 * 109.47223 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.46949 * 120.00329 * 14 12 10 17 17 H 1.48503 * 109.47199 * 239.99941 * 14 12 10 18 18 C 1.53001 * 117.49570 * 144.89637 * 9 8 7 19 19 C 1.52997 * 117.49995 * 76.23917 * 9 8 7 20 20 C 1.46463 * 112.56129 * 287.34328 * 7 6 4 21 21 C 1.53246 * 109.85908 * 72.65798 * 20 7 6 22 22 S 1.81892 * 109.79361 * 299.11156 * 4 2 1 23 23 H 1.08998 * 109.46565 * 299.99594 * 1 2 3 24 24 H 1.08995 * 109.47618 * 59.99828 * 1 2 3 25 25 H 1.09000 * 109.47230 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46858 * 239.99902 * 2 1 3 27 27 H 1.08995 * 109.47584 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.46932 * 300.00311 * 3 2 1 29 29 H 1.09000 * 109.46801 * 60.00092 * 3 2 1 30 30 H 1.08994 * 109.40587 * 302.02582 * 6 4 2 31 31 H 1.08997 * 109.40582 * 61.78516 * 6 4 2 32 32 H 1.09000 * 109.47189 * 281.29817 * 8 7 6 33 33 H 1.09001 * 109.47036 * 41.30250 * 8 7 6 34 34 H 0.97000 * 120.00116 * 185.00771 * 13 12 10 35 35 H 1.09005 * 117.49778 * 359.97438 * 18 9 8 36 36 H 1.09002 * 117.49980 * 145.01748 * 18 9 8 37 37 H 1.08997 * 117.50125 * 214.97634 * 19 9 8 38 38 H 1.09005 * 117.49502 * 359.96895 * 19 9 8 39 39 H 1.09003 * 109.40574 * 312.54149 * 20 7 6 40 40 H 1.08999 * 109.40911 * 192.77755 * 20 7 6 41 41 H 1.09011 * 109.63194 * 178.29447 * 21 20 7 42 42 H 1.08998 * 109.79543 * 57.80054 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6725 -1.7474 1.2553 6 6 3.5726 -0.7239 1.2525 7 7 4.0664 -1.4528 2.4231 8 6 5.4733 -1.8376 2.2486 9 6 6.0858 -2.1631 3.6124 10 6 6.2780 -0.9877 4.5358 11 1 6.1539 -1.1123 5.6014 12 6 6.6121 0.2466 4.0203 13 7 7.0829 0.3424 2.7961 14 14 6.3959 1.7829 5.0607 15 1 5.8539 1.4074 6.3913 16 1 7.7100 2.4529 5.2331 17 1 5.4526 2.7097 4.3850 18 6 7.1251 -3.2844 3.6706 19 6 5.7245 -3.5079 4.2463 20 6 3.8766 -0.7080 3.6699 21 6 2.3927 -0.7029 4.0525 22 16 1.4605 0.1444 2.7401 23 1 -0.3632 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9562 0.8900 30 1 3.9359 -1.2069 0.3454 31 1 3.9365 0.3030 1.2852 32 1 5.5328 -2.7152 1.6048 33 1 6.0214 -1.0138 1.7914 34 1 7.3860 1.1998 2.4587 35 1 7.3722 -3.7905 2.7373 36 1 7.9476 -3.1722 4.3770 37 1 5.6261 -3.5426 5.3313 38 1 5.0501 -4.1606 3.6920 39 1 4.2194 0.3178 3.5347 40 1 4.4540 -1.1797 4.4650 41 1 2.2597 -0.1738 4.9963 42 1 2.0339 -1.7271 4.1532 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602788506.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:45 Heat of formation + Delta-G solvation = 30.758613 kcal Electronic energy + Delta-G solvation = -20212.487395 eV Core-core repulsion = 17512.558901 eV Total energy + Delta-G solvation = -2699.928494 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.39246 -36.61132 -34.66979 -32.35740 -30.20037 -28.87757 -27.01913 -26.00827 -24.37495 -22.79912 -21.10746 -20.29560 -19.95576 -18.78720 -16.45591 -16.03185 -15.23981 -14.84418 -14.56757 -14.38454 -13.75917 -13.66751 -13.35875 -13.18003 -12.63722 -12.37229 -12.30353 -11.85253 -11.65899 -11.46950 -11.26013 -11.18627 -10.94490 -10.89048 -10.69362 -10.55897 -10.46979 -10.42352 -10.26884 -9.83521 -9.26719 -9.17725 -8.88604 -8.67687 -8.30013 -7.26729 -7.04991 -6.14559 -4.12846 2.32810 3.09043 3.17569 3.28746 3.30457 4.23906 4.58537 4.86047 5.02145 5.14788 5.19275 5.52826 5.61740 5.70426 5.76291 5.82235 5.85700 5.94493 5.99191 6.06019 6.07956 6.14280 6.21082 6.27465 6.37266 6.40842 6.50023 6.58678 6.61471 6.72548 6.76068 6.89424 7.03248 7.05819 7.32215 7.39386 7.52519 7.88020 8.13132 8.20897 8.30708 8.71629 9.34002 10.78691 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019455 B = 0.007747 C = 0.006825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.845255 B = 3613.414517 C = 4101.754323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.076 4.076 3 C -0.151 4.151 4 C -0.028 4.028 5 H 0.086 0.914 6 C 0.061 3.939 7 N -0.542 5.542 8 C 0.084 3.916 9 C 0.048 3.952 10 C -0.492 4.492 11 H 0.066 0.934 12 C 0.076 3.924 13 N -0.867 5.867 14 Si 0.876 3.124 15 H -0.268 1.268 16 H -0.283 1.283 17 H -0.277 1.277 18 C -0.201 4.201 19 C -0.202 4.202 20 C 0.043 3.957 21 C -0.076 4.076 22 S -0.297 6.297 23 H 0.064 0.936 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.032 0.968 33 H 0.098 0.902 34 H 0.263 0.737 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.041 0.959 40 H 0.150 0.850 41 H 0.092 0.908 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.641 -0.575 -4.062 9.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 C -0.209 4.209 4 C -0.158 4.158 5 H 0.105 0.895 6 C -0.069 4.069 7 N -0.266 5.266 8 C -0.043 4.043 9 C 0.047 3.953 10 C -0.528 4.528 11 H 0.084 0.916 12 C -0.128 4.128 13 N -0.503 5.503 14 Si 0.703 3.297 15 H -0.192 1.192 16 H -0.209 1.209 17 H -0.203 1.203 18 C -0.239 4.239 19 C -0.240 4.240 20 C -0.086 4.086 21 C -0.224 4.224 22 S -0.071 6.071 23 H 0.083 0.917 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.115 0.885 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.059 0.941 40 H 0.167 0.833 41 H 0.110 0.890 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.649 0.005 -4.081 10.476 hybrid contribution 1.278 0.468 0.324 1.398 sum -8.371 0.473 -3.758 9.188 Atomic orbital electron populations 1.21851 0.94890 1.01719 1.01849 1.20941 0.95953 0.96712 0.95958 1.21950 1.01640 0.95489 1.01797 1.23263 0.98456 1.00593 0.93440 0.89531 1.22210 0.91907 0.97958 0.94861 1.61255 1.21279 1.42837 1.01232 1.21867 0.85610 1.00218 0.96597 1.19051 0.95566 0.87007 0.93674 1.20392 1.47706 0.91962 0.92771 0.91605 1.24901 0.94278 0.98794 0.94831 1.69798 1.39037 1.25231 1.16248 0.86768 0.78247 0.83591 0.81089 1.19205 1.20948 1.20256 1.22936 0.92307 1.07973 1.00699 1.22838 0.98335 1.04095 0.98685 1.23304 0.91429 0.98356 0.95488 1.23865 0.99470 1.01842 0.97242 1.86358 1.61458 1.54455 1.04845 0.91689 0.92977 0.92821 0.90579 0.92177 0.93259 0.91375 0.91468 0.93611 0.94990 0.88468 0.92662 0.91853 0.90533 0.90970 0.91111 0.94098 0.83318 0.88967 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.97 37.16 0.33 -1.43 16 2 C -0.08 -1.02 2.76 -90.62 -0.25 -1.27 16 3 C -0.15 -2.11 8.60 37.16 0.32 -1.79 16 4 C -0.03 -0.46 2.56 -26.60 -0.07 -0.52 16 5 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 6 C 0.06 1.12 4.20 -3.93 -0.02 1.11 16 7 N -0.54 -11.13 4.60 -235.04 -1.08 -12.21 16 8 C 0.08 1.88 5.06 -3.82 -0.02 1.86 16 9 C 0.05 1.10 1.15 -155.66 -0.18 0.93 16 10 C -0.49 -12.20 5.70 -34.44 -0.20 -12.40 16 11 H 0.07 1.65 7.87 -52.49 -0.41 1.24 16 12 C 0.08 1.91 3.62 -17.82 -0.06 1.84 16 13 N -0.87 -22.54 10.81 55.43 0.60 -21.95 16 14 Si 0.88 19.95 28.78 -169.99 -4.89 15.06 16 15 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 C -0.20 -4.41 9.91 -26.70 -0.26 -4.68 16 19 C -0.20 -4.24 9.80 -26.70 -0.26 -4.51 16 20 C 0.04 0.90 3.84 -3.93 -0.02 0.88 16 21 C -0.08 -1.38 6.69 37.28 0.25 -1.13 16 22 S -0.30 -5.14 18.89 -107.50 -2.03 -7.17 16 23 H 0.06 0.86 6.98 -51.93 -0.36 0.50 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.90 6.48 -51.93 -0.34 0.57 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 1.03 6.90 -51.93 -0.36 0.68 16 30 H 0.07 1.19 7.96 -51.93 -0.41 0.78 16 31 H 0.05 0.94 6.32 -51.93 -0.33 0.61 16 32 H 0.03 0.70 8.06 -51.93 -0.42 0.28 16 33 H 0.10 2.44 5.20 -51.93 -0.27 2.17 16 34 H 0.26 6.63 8.32 -40.82 -0.34 6.29 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 37 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.04 0.96 5.90 -51.93 -0.31 0.66 16 40 H 0.15 3.40 3.84 -51.93 -0.20 3.20 16 41 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 42 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 320.65 15.07 4.83 4.83 Total: -1.00 -24.72 320.65 -10.20 -34.92 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -7.19 Total: 7.61 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -0.43 Total: -21.10 kcal Atomic # 7 Polarization: -33.67 SS G_CDS: -0.48 Total: -34.16 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.89 Total: 15.06 kcal Atomic # 16 Polarization: -5.14 SS G_CDS: -2.03 Total: -7.17 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -24.72 -10.20 -34.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602788506.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.679 kcal (2) G-P(sol) polarization free energy of solvation -24.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds