Wall clock time and date at job start Mon Mar 30 2020 00:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47125 * 2 1 4 4 C 1.53000 * 109.47076 * 120.00146 * 2 1 3 5 5 H 1.09001 * 109.62615 * 304.60111 * 4 2 1 6 6 C 1.53249 * 109.63008 * 184.01216 * 4 2 1 7 7 N 1.46465 * 109.86443 * 178.28728 * 6 4 2 8 8 C 1.46896 * 111.00604 * 197.76550 * 7 6 4 9 9 C 1.52998 * 109.47251 * 155.97434 * 8 7 6 10 10 C 1.50704 * 115.54569 * 148.88352 * 9 8 7 11 11 H 1.07998 * 119.99623 * 120.36213 * 10 9 8 12 12 C 1.37873 * 120.00052 * 300.35589 * 10 9 8 13 13 N 1.31511 * 119.99746 * 154.47335 * 12 10 9 14 14 Si 1.86798 * 120.00280 * 334.47759 * 12 10 9 15 15 H 1.48504 * 109.46898 * 84.60534 * 14 12 10 16 16 H 1.48497 * 109.47345 * 204.60230 * 14 12 10 17 17 H 1.48499 * 109.47146 * 324.60870 * 14 12 10 18 18 C 1.53003 * 117.49820 * 3.17837 * 9 8 7 19 19 C 1.52991 * 117.49874 * 294.55512 * 9 8 7 20 20 C 1.46478 * 112.55384 * 72.65460 * 7 6 4 21 21 C 1.53243 * 109.86147 * 287.34413 * 20 7 6 22 22 S 1.81895 * 109.63378 * 64.99634 * 4 2 1 23 23 H 1.09005 * 109.46989 * 299.99645 * 1 2 3 24 24 H 1.08993 * 109.47599 * 60.00168 * 1 2 3 25 25 H 1.08998 * 109.47325 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46680 * 239.99727 * 2 1 3 27 27 H 1.08995 * 109.47433 * 59.99786 * 3 2 1 28 28 H 1.09001 * 109.47074 * 180.02562 * 3 2 1 29 29 H 1.09009 * 109.46790 * 299.99966 * 3 2 1 30 30 H 1.09006 * 109.40507 * 298.41360 * 6 4 2 31 31 H 1.09001 * 109.40527 * 58.17043 * 6 4 2 32 32 H 1.08998 * 109.46885 * 275.97977 * 8 7 6 33 33 H 1.09001 * 109.46857 * 35.97621 * 8 7 6 34 34 H 0.97000 * 120.00011 * 179.97438 * 13 12 10 35 35 H 1.08997 * 117.49738 * 359.97438 * 18 9 8 36 36 H 1.09000 * 117.49643 * 145.01681 * 18 9 8 37 37 H 1.09010 * 117.49839 * 214.98006 * 19 9 8 38 38 H 1.09004 * 117.50405 * 359.97438 * 19 9 8 39 39 H 1.09001 * 109.40342 * 167.22582 * 20 7 6 40 40 H 1.09000 * 109.40656 * 47.46811 * 20 7 6 41 41 H 1.09006 * 109.63505 * 302.30345 * 21 20 7 42 42 H 1.08997 * 109.63071 * 181.70913 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6124 -0.2592 2.1390 6 6 3.5692 -0.6365 1.3044 7 7 4.0603 -1.2902 2.5196 8 6 5.4366 -0.8750 2.8215 9 6 5.7085 -1.0580 4.3159 10 6 7.1318 -1.3923 4.6814 11 1 7.6893 -0.7380 5.3352 12 6 7.7221 -2.5335 4.1813 13 7 9.0297 -2.5968 4.0566 14 14 6.6645 -3.9896 3.6806 15 1 6.1781 -3.7936 2.2912 16 1 7.4707 -5.2347 3.7517 17 1 5.5039 -4.0981 4.6006 18 6 4.5964 -1.6763 5.1657 19 6 4.9152 -0.1851 5.2903 20 6 3.9547 -2.7498 2.4543 21 6 2.4872 -3.1719 2.5828 22 16 1.5610 -2.4747 1.1809 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4424 -0.0005 29 1 1.6766 1.9563 -0.8901 30 1 3.9912 -1.1327 0.4304 31 1 3.8740 0.4100 1.3078 32 1 6.1343 -1.4851 2.2478 33 1 5.5665 0.1738 2.5543 34 1 9.4451 -3.3998 3.7051 35 1 3.6711 -1.9522 4.6601 36 1 4.8942 -2.3252 5.9893 37 1 5.4227 0.1472 6.1961 38 1 4.1999 0.5200 4.8667 39 1 4.5311 -3.1913 3.2673 40 1 4.3500 -3.0991 1.5005 41 1 2.0770 -2.7911 3.5182 42 1 2.4160 -4.2594 2.5642 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602788507.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:47 Heat of formation + Delta-G solvation = 31.332601 kcal Electronic energy + Delta-G solvation = -19951.203723 eV Core-core repulsion = 17251.300119 eV Total energy + Delta-G solvation = -2699.903604 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.82713 -36.79729 -35.04260 -32.21019 -30.86714 -29.26082 -27.34266 -26.27617 -24.33569 -23.70894 -21.27639 -20.90927 -20.18903 -18.82349 -16.90845 -16.38008 -15.47976 -15.12774 -14.82210 -14.76180 -14.21893 -13.95481 -13.68025 -13.38787 -13.04882 -12.76382 -12.59482 -12.40656 -12.16845 -11.81438 -11.59971 -11.50449 -11.33480 -11.15432 -10.90320 -10.82122 -10.66804 -10.47029 -10.26011 -9.83454 -9.54772 -9.33633 -9.13098 -8.62725 -8.19068 -7.92048 -7.51828 -6.25114 -4.11536 1.89057 2.64744 3.16377 3.32442 3.35189 4.04952 4.34898 4.70962 4.72200 4.88738 4.94156 5.11802 5.24966 5.28617 5.30166 5.41270 5.49737 5.52353 5.56434 5.66433 5.74687 5.79034 5.90693 5.97310 6.00154 6.04008 6.07651 6.17252 6.19641 6.24415 6.30006 6.51254 6.67096 6.70291 6.94085 7.15879 7.32625 7.43284 7.51726 7.80385 8.48948 8.88774 9.46273 10.86472 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025589 B = 0.006501 C = 0.005987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.941553 B = 4306.208994 C = 4675.837661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.076 4.076 3 C -0.146 4.146 4 C -0.031 4.031 5 H 0.095 0.905 6 C 0.055 3.945 7 N -0.547 5.547 8 C 0.092 3.908 9 C 0.007 3.993 10 C -0.497 4.497 11 H 0.075 0.925 12 C 0.086 3.914 13 N -0.877 5.877 14 Si 0.857 3.143 15 H -0.271 1.271 16 H -0.296 1.296 17 H -0.254 1.254 18 C -0.198 4.198 19 C -0.175 4.175 20 C 0.042 3.958 21 C -0.074 4.074 22 S -0.282 6.282 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.066 0.934 34 H 0.265 0.735 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.043 0.957 41 H 0.092 0.908 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.885 3.349 -7.544 17.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.096 4.096 3 C -0.205 4.205 4 C -0.160 4.160 5 H 0.113 0.887 6 C -0.074 4.074 7 N -0.271 5.271 8 C -0.035 4.035 9 C 0.005 3.995 10 C -0.534 4.534 11 H 0.093 0.907 12 C -0.118 4.118 13 N -0.512 5.512 14 Si 0.685 3.315 15 H -0.197 1.197 16 H -0.223 1.223 17 H -0.180 1.180 18 C -0.235 4.235 19 C -0.212 4.212 20 C -0.087 4.087 21 C -0.222 4.222 22 S -0.055 6.055 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.116 0.884 40 H 0.061 0.939 41 H 0.110 0.890 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.681 2.833 -7.931 17.799 hybrid contribution 0.857 -0.647 0.042 1.074 sum -14.824 2.187 -7.889 16.934 Atomic orbital electron populations 1.21859 0.94537 1.02366 1.01615 1.20951 0.96280 0.95952 0.96456 1.21913 1.01548 0.95039 1.01980 1.23343 0.98215 0.92815 1.01667 0.88715 1.22393 0.92777 1.00267 0.91989 1.61236 1.25046 1.06657 1.34209 1.21972 0.84716 0.99315 0.97448 1.19337 0.92115 1.00388 0.87616 1.20268 0.93632 1.08524 1.30963 0.90709 1.24880 0.94290 0.98639 0.93982 1.70092 1.10074 1.28109 1.42966 0.87446 0.81388 0.83002 0.79661 1.19690 1.22298 1.17960 1.23159 1.01269 0.95045 1.04049 1.22617 1.03662 0.93090 1.01871 1.22744 0.94747 0.89103 1.02137 1.23575 0.97325 1.02697 0.98617 1.86583 1.64963 1.09658 1.44266 0.92547 0.92681 0.91847 0.90544 0.92301 0.92024 0.92400 0.94046 0.89542 0.93786 0.91544 0.92540 0.89814 0.90831 0.90682 0.91034 0.88374 0.93895 0.88986 0.88101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.02 37.16 0.34 -1.10 16 2 C -0.08 -0.82 2.51 -90.62 -0.23 -1.05 16 3 C -0.15 -1.38 8.74 37.15 0.32 -1.05 16 4 C -0.03 -0.41 2.35 -26.60 -0.06 -0.47 16 5 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 6 C 0.06 0.82 4.31 -3.93 -0.02 0.80 16 7 N -0.55 -9.69 3.27 -235.04 -0.77 -10.46 16 8 C 0.09 1.90 4.72 -3.83 -0.02 1.88 16 9 C 0.01 0.16 1.32 -155.66 -0.21 -0.05 16 10 C -0.50 -13.61 9.27 -34.44 -0.32 -13.93 16 11 H 0.07 2.24 8.06 -52.49 -0.42 1.82 16 12 C 0.09 2.41 5.12 -17.82 -0.09 2.31 16 13 N -0.88 -25.94 13.96 55.43 0.77 -25.16 16 14 Si 0.86 20.61 22.73 -169.99 -3.86 16.75 16 15 H -0.27 -6.22 5.56 56.52 0.31 -5.91 16 16 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 17 H -0.25 -5.86 5.86 56.52 0.33 -5.53 16 18 C -0.20 -4.18 6.85 -26.73 -0.18 -4.37 16 19 C -0.18 -3.61 9.93 -26.74 -0.27 -3.88 16 20 C 0.04 0.76 2.86 -3.93 -0.01 0.75 16 21 C -0.07 -1.13 6.57 37.28 0.24 -0.89 16 22 S -0.28 -4.06 20.60 -107.50 -2.21 -6.27 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.69 7.15 -51.93 -0.37 0.31 16 26 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.60 6.33 -51.93 -0.33 0.27 16 29 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.04 0.64 7.92 -51.93 -0.41 0.23 16 31 H 0.09 1.19 5.71 -51.93 -0.30 0.89 16 32 H 0.04 1.01 6.27 -51.93 -0.33 0.68 16 33 H 0.07 1.29 7.53 -51.93 -0.39 0.90 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.08 1.66 4.92 -51.93 -0.26 1.40 16 36 H 0.07 1.64 8.03 -51.93 -0.42 1.22 16 37 H 0.07 1.56 8.14 -51.92 -0.42 1.13 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.10 2.00 1.93 -51.93 -0.10 1.89 16 40 H 0.04 0.82 7.38 -51.93 -0.38 0.43 16 41 H 0.09 1.40 7.36 -51.93 -0.38 1.02 16 42 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 312.84 15.07 4.71 4.71 Total: -1.00 -27.94 312.84 -9.04 -36.98 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -7.18 Total: 4.50 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: -0.50 Total: -21.04 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.00 Total: -35.63 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -3.86 Total: 16.75 kcal Atomic # 16 Polarization: -4.06 SS G_CDS: -2.21 Total: -6.27 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.94 -9.04 -36.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602788507.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.311 kcal (2) G-P(sol) polarization free energy of solvation -27.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds