Wall clock time and date at job start Mon Mar 30 2020 01:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81403 * 102.99962 * 2 1 4 4 H 1.08996 * 108.73445 * 306.56679 * 3 2 1 5 5 C 1.45876 * 108.84234 * 65.00426 * 3 2 1 6 6 C 1.54521 * 111.68183 * 182.31410 * 5 3 2 7 7 C 1.50531 * 108.85288 * 282.74076 * 6 5 3 8 8 C 1.53914 * 112.93957 * 91.75635 * 7 6 5 9 9 N 1.47948 * 113.32614 * 317.75905 * 8 7 6 10 10 C 1.46905 * 110.99481 * 192.17414 * 9 8 7 11 11 C 1.52993 * 109.47197 * 61.09640 * 10 9 8 12 12 C 1.50702 * 115.54857 * 278.84072 * 11 10 9 13 13 H 1.07999 * 120.00169 * 145.16532 * 12 11 10 14 14 C 1.37878 * 119.99856 * 325.16495 * 12 11 10 15 15 N 1.31512 * 120.00338 * 340.89068 * 14 12 11 16 16 Si 1.86807 * 119.99805 * 160.88586 * 14 12 11 17 17 H 1.48496 * 109.46869 * 60.00181 * 16 14 12 18 18 H 1.48500 * 109.47073 * 180.02562 * 16 14 12 19 19 H 1.48491 * 109.47200 * 300.00260 * 16 14 12 20 20 C 1.53001 * 117.50079 * 133.13525 * 11 10 9 21 21 C 1.52996 * 59.99991 * 252.50604 * 20 11 10 22 22 C 1.44302 * 113.65853 * 318.12987 * 9 8 7 23 23 H 1.09002 * 109.46934 * 299.99772 * 1 2 3 24 24 H 1.09000 * 109.47280 * 59.99809 * 1 2 3 25 25 H 1.08999 * 109.47020 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.03917 * 302.87688 * 5 3 2 27 27 H 1.09000 * 109.04418 * 61.81911 * 5 3 2 28 28 H 1.09007 * 109.56851 * 42.54562 * 6 5 3 29 29 H 1.08994 * 109.57737 * 162.92045 * 6 5 3 30 30 H 1.09003 * 108.78825 * 212.65175 * 7 6 5 31 31 H 1.09004 * 108.79208 * 330.86356 * 7 6 5 32 32 H 1.09000 * 108.70840 * 78.75120 * 8 7 6 33 33 H 1.08997 * 108.71352 * 196.89033 * 8 7 6 34 34 H 1.09001 * 109.46716 * 181.09478 * 10 9 8 35 35 H 1.08996 * 109.47362 * 301.09200 * 10 9 8 36 36 H 0.97004 * 120.00258 * 185.15546 * 15 14 12 37 37 H 1.09000 * 117.49914 * 359.97438 * 20 11 10 38 38 H 1.09004 * 117.49775 * 145.02031 * 20 11 10 39 39 H 1.09000 * 117.49960 * 252.51160 * 21 20 11 40 40 H 1.09004 * 117.49665 * 107.48664 * 21 20 11 41 41 H 1.08999 * 109.68720 * 335.68470 * 22 9 8 42 42 H 1.08990 * 109.69271 * 215.10113 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7016 2.2470 -0.8290 5 6 1.7596 2.3578 1.2513 6 6 2.0236 3.8796 1.2965 7 6 3.4807 4.1119 1.5946 8 6 4.3401 4.2391 0.3241 9 7 3.9903 3.2521 -0.7211 10 6 5.0096 3.2216 -1.7785 11 6 6.3553 2.8104 -1.1780 12 6 7.1255 3.9109 -0.4946 13 1 7.7205 3.6912 0.3795 14 6 7.0705 5.1982 -0.9854 15 7 6.6787 5.4143 -2.2220 16 14 7.5526 6.6353 0.1064 17 1 8.9641 6.4763 0.5392 18 1 7.4067 7.9037 -0.6520 19 1 6.6696 6.6683 1.2998 20 6 7.1593 1.7371 -1.9146 21 6 6.4667 1.4014 -0.5923 22 6 3.7396 1.9276 -0.2061 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.6892 2.1795 1.3544 27 1 2.2806 1.8828 2.0826 28 1 1.7731 4.3225 0.3325 29 1 1.4141 4.3330 2.0781 30 1 3.5782 5.0277 2.1776 31 1 3.8547 3.2784 2.1894 32 1 4.2132 5.2414 -0.0849 33 1 5.3871 4.1027 0.5950 34 1 4.7180 2.5020 -2.5435 35 1 5.0986 4.2115 -2.2260 36 1 6.7110 6.3107 -2.5914 37 1 6.7293 1.3236 -2.8268 38 1 8.2456 1.8269 -1.9051 39 1 7.0973 1.2703 0.2871 40 1 5.5811 0.7673 -0.6349 41 1 4.2551 1.8001 0.7458 42 1 4.0941 1.1833 -0.9190 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602795976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:29 Heat of formation + Delta-G solvation = 32.173980 kcal Electronic energy + Delta-G solvation = -20219.523188 eV Core-core repulsion = 17519.656070 eV Total energy + Delta-G solvation = -2699.867119 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.04997 -36.45962 -33.10752 -32.49662 -31.71277 -28.91853 -26.99890 -25.94268 -24.42504 -23.39156 -21.31865 -20.17506 -19.40637 -18.76586 -16.41269 -16.12864 -15.59769 -14.76695 -14.69082 -14.18026 -14.02540 -13.64416 -13.48011 -13.22152 -12.97160 -12.79598 -12.49085 -12.27833 -11.84497 -11.55047 -11.15490 -10.98204 -10.90127 -10.68599 -10.44895 -10.35823 -10.27448 -10.06839 -10.02147 -9.83113 -9.50310 -9.43188 -8.99612 -8.76912 -8.04732 -7.53225 -7.14056 -6.15270 -4.07866 1.85802 2.76798 3.21459 3.28793 3.31970 4.28814 4.72409 4.92902 5.07017 5.10969 5.15607 5.20818 5.43575 5.52535 5.62686 5.64769 5.70931 5.85245 6.02528 6.05511 6.10999 6.17258 6.29755 6.35369 6.43622 6.47052 6.53853 6.63184 6.67674 6.73338 6.75711 6.95229 7.03594 7.24756 7.35671 7.43138 7.57303 7.94050 8.17246 8.23865 8.47908 8.79929 9.41185 10.85563 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023991 B = 0.006781 C = 0.005763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.829386 B = 4128.128192 C = 4857.808782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.287 6.287 3 C -0.035 4.035 4 H 0.090 0.910 5 C -0.110 4.110 6 C -0.104 4.104 7 C -0.123 4.123 8 C 0.044 3.956 9 N -0.536 5.536 10 C 0.082 3.918 11 C 0.026 3.974 12 C -0.490 4.490 13 H 0.059 0.941 14 C 0.079 3.921 15 N -0.865 5.865 16 Si 0.879 3.121 17 H -0.277 1.277 18 H -0.285 1.285 19 H -0.271 1.271 20 C -0.202 4.202 21 C -0.222 4.222 22 C 0.087 3.913 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.037 0.963 35 H 0.129 0.871 36 H 0.265 0.735 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.048 0.952 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.598 -4.445 4.731 12.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.059 6.059 3 C -0.165 4.165 4 H 0.108 0.892 5 C -0.149 4.149 6 C -0.144 4.144 7 C -0.161 4.161 8 C -0.083 4.083 9 N -0.259 5.259 10 C -0.045 4.045 11 C 0.024 3.976 12 C -0.526 4.526 13 H 0.077 0.923 14 C -0.125 4.125 15 N -0.501 5.501 16 Si 0.705 3.295 17 H -0.203 1.203 18 H -0.211 1.211 19 H -0.196 1.196 20 C -0.241 4.241 21 C -0.259 4.259 22 C -0.043 4.043 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.113 0.887 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.055 0.945 35 H 0.146 0.854 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.066 0.934 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.456 -5.022 4.393 12.404 hybrid contribution 0.229 1.325 0.872 1.603 sum -10.227 -3.697 5.265 12.082 Atomic orbital electron populations 1.23330 0.95049 1.05748 1.04580 1.86846 1.06484 1.14556 1.98023 1.22350 1.02529 0.90373 1.01212 0.89210 1.20879 1.00030 0.96720 0.97310 1.21289 0.96794 0.94436 1.01856 1.21476 0.94973 1.01044 0.98604 1.22771 1.01017 0.94972 0.89496 1.60975 1.45773 1.05601 1.13583 1.22124 0.86325 1.05239 0.90802 1.19730 0.94816 0.86380 0.96631 1.20375 1.28626 0.91279 1.12368 0.92283 1.24909 0.94461 0.98568 0.94585 1.69782 1.45645 1.22118 1.12561 0.86854 0.79247 0.81925 0.81427 1.20259 1.21062 1.19573 1.22938 0.98646 1.09321 0.93206 1.23210 1.02308 1.03518 0.96865 1.21657 0.89774 0.92867 1.00007 0.90817 0.90798 0.88694 0.93104 0.91511 0.90906 0.92866 0.92453 0.92878 0.92408 0.88821 0.94460 0.85364 0.92446 0.91871 0.90816 0.91192 0.90459 0.93357 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 10.37 101.05 1.05 -0.21 16 2 S -0.29 -4.16 21.57 -107.50 -2.32 -6.48 16 3 C -0.04 -0.55 2.27 -29.59 -0.07 -0.61 16 4 H 0.09 1.45 8.08 -51.89 -0.42 1.03 16 5 C -0.11 -1.53 4.50 -29.30 -0.13 -1.66 16 6 C -0.10 -1.49 5.63 -27.17 -0.15 -1.64 16 7 C -0.12 -2.02 5.27 -27.49 -0.14 -2.17 16 8 C 0.04 0.89 4.65 -2.77 -0.01 0.87 16 9 N -0.54 -10.69 4.18 -234.64 -0.98 -11.67 16 10 C 0.08 1.86 5.09 -3.82 -0.02 1.84 16 11 C 0.03 0.62 1.46 -155.66 -0.23 0.39 16 12 C -0.49 -12.52 6.36 -34.44 -0.22 -12.74 16 13 H 0.06 1.55 7.89 -52.49 -0.41 1.13 16 14 C 0.08 2.00 4.39 -17.82 -0.08 1.92 16 15 N -0.87 -22.70 10.91 55.43 0.60 -22.10 16 16 Si 0.88 19.81 29.58 -169.99 -5.03 14.78 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 C -0.20 -4.63 9.88 -26.73 -0.26 -4.89 16 21 C -0.22 -4.80 8.52 -26.73 -0.23 -5.03 16 22 C 0.09 1.58 2.89 -4.70 -0.01 1.57 16 23 H 0.07 0.72 6.98 -51.92 -0.36 0.35 16 24 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 25 H 0.09 0.87 8.14 -51.92 -0.42 0.44 16 26 H 0.05 0.62 6.55 -51.93 -0.34 0.28 16 27 H 0.07 0.95 7.58 -51.93 -0.39 0.56 16 28 H 0.07 1.12 7.78 -51.93 -0.40 0.72 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.87 6.66 -51.93 -0.35 0.53 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.09 2.14 4.43 -51.93 -0.23 1.91 16 34 H 0.04 0.83 7.70 -51.93 -0.40 0.43 16 35 H 0.13 3.25 5.22 -51.93 -0.27 2.98 16 36 H 0.27 6.70 8.32 -40.82 -0.34 6.36 16 37 H 0.06 1.37 8.08 -51.93 -0.42 0.95 16 38 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 39 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.08 1.58 5.04 -51.93 -0.26 1.32 16 41 H 0.05 0.92 6.33 -51.93 -0.33 0.60 16 42 H 0.08 1.46 5.12 -51.93 -0.27 1.20 16 LS Contribution 317.62 15.07 4.79 4.79 Total: -1.00 -25.09 317.62 -10.40 -35.49 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -6.95 Total: 7.53 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: -0.51 Total: -22.35 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: -0.38 Total: -33.76 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.78 kcal Atomic # 16 Polarization: -4.16 SS G_CDS: -2.32 Total: -6.48 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -25.09 -10.40 -35.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602795976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.663 kcal (2) G-P(sol) polarization free energy of solvation -25.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds