Wall clock time and date at job start Mon Mar 30 2020 01:16:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81399 * 1
3 3 C 1.81403 * 102.99962 * 2 1
4 4 H 1.08996 * 108.73445 * 306.56679 * 3 2 1
5 5 C 1.45876 * 108.84234 * 65.00426 * 3 2 1
6 6 C 1.54521 * 111.68183 * 182.31410 * 5 3 2
7 7 C 1.50531 * 108.85288 * 282.74076 * 6 5 3
8 8 C 1.53914 * 112.93957 * 91.75635 * 7 6 5
9 9 N 1.47948 * 113.32614 * 317.75905 * 8 7 6
10 10 C 1.46905 * 110.99481 * 192.17414 * 9 8 7
11 11 C 1.52993 * 109.47197 * 61.09640 * 10 9 8
12 12 C 1.50702 * 115.54857 * 278.84072 * 11 10 9
13 13 H 1.07999 * 120.00169 * 145.16532 * 12 11 10
14 14 C 1.37878 * 119.99856 * 325.16495 * 12 11 10
15 15 N 1.31512 * 120.00338 * 340.89068 * 14 12 11
16 16 Si 1.86807 * 119.99805 * 160.88586 * 14 12 11
17 17 H 1.48496 * 109.46869 * 60.00181 * 16 14 12
18 18 H 1.48500 * 109.47073 * 180.02562 * 16 14 12
19 19 H 1.48491 * 109.47200 * 300.00260 * 16 14 12
20 20 C 1.53001 * 117.50079 * 133.13525 * 11 10 9
21 21 C 1.52996 * 59.99991 * 252.50604 * 20 11 10
22 22 C 1.44302 * 113.65853 * 318.12987 * 9 8 7
23 23 H 1.09002 * 109.46934 * 299.99772 * 1 2 3
24 24 H 1.09000 * 109.47280 * 59.99809 * 1 2 3
25 25 H 1.08999 * 109.47020 * 180.02562 * 1 2 3
26 26 H 1.09004 * 109.03917 * 302.87688 * 5 3 2
27 27 H 1.09000 * 109.04418 * 61.81911 * 5 3 2
28 28 H 1.09007 * 109.56851 * 42.54562 * 6 5 3
29 29 H 1.08994 * 109.57737 * 162.92045 * 6 5 3
30 30 H 1.09003 * 108.78825 * 212.65175 * 7 6 5
31 31 H 1.09004 * 108.79208 * 330.86356 * 7 6 5
32 32 H 1.09000 * 108.70840 * 78.75120 * 8 7 6
33 33 H 1.08997 * 108.71352 * 196.89033 * 8 7 6
34 34 H 1.09001 * 109.46716 * 181.09478 * 10 9 8
35 35 H 1.08996 * 109.47362 * 301.09200 * 10 9 8
36 36 H 0.97004 * 120.00258 * 185.15546 * 15 14 12
37 37 H 1.09000 * 117.49914 * 359.97438 * 20 11 10
38 38 H 1.09004 * 117.49775 * 145.02031 * 20 11 10
39 39 H 1.09000 * 117.49960 * 252.51160 * 21 20 11
40 40 H 1.09004 * 117.49665 * 107.48664 * 21 20 11
41 41 H 1.08999 * 109.68720 * 335.68470 * 22 9 8
42 42 H 1.08990 * 109.69271 * 215.10113 * 22 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2220 1.7675 0.0000
4 1 1.7016 2.2470 -0.8290
5 6 1.7596 2.3578 1.2513
6 6 2.0236 3.8796 1.2965
7 6 3.4807 4.1119 1.5946
8 6 4.3401 4.2391 0.3241
9 7 3.9903 3.2521 -0.7211
10 6 5.0096 3.2216 -1.7785
11 6 6.3553 2.8104 -1.1780
12 6 7.1255 3.9109 -0.4946
13 1 7.7205 3.6912 0.3795
14 6 7.0705 5.1982 -0.9854
15 7 6.6787 5.4143 -2.2220
16 14 7.5526 6.6353 0.1064
17 1 8.9641 6.4763 0.5392
18 1 7.4067 7.9037 -0.6520
19 1 6.6696 6.6683 1.2998
20 6 7.1593 1.7371 -1.9146
21 6 6.4667 1.4014 -0.5923
22 6 3.7396 1.9276 -0.2061
23 1 -0.3633 0.5138 0.8900
24 1 -0.3634 0.5139 -0.8900
25 1 -0.3633 -1.0277 0.0005
26 1 0.6892 2.1795 1.3544
27 1 2.2806 1.8828 2.0826
28 1 1.7731 4.3225 0.3325
29 1 1.4141 4.3330 2.0781
30 1 3.5782 5.0277 2.1776
31 1 3.8547 3.2784 2.1894
32 1 4.2132 5.2414 -0.0849
33 1 5.3871 4.1027 0.5950
34 1 4.7180 2.5020 -2.5435
35 1 5.0986 4.2115 -2.2260
36 1 6.7110 6.3107 -2.5914
37 1 6.7293 1.3236 -2.8268
38 1 8.2456 1.8269 -1.9051
39 1 7.0973 1.2703 0.2871
40 1 5.5811 0.7673 -0.6349
41 1 4.2551 1.8001 0.7458
42 1 4.0941 1.1833 -0.9190
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000602795976.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:16:29
Heat of formation + Delta-G solvation = 32.173980 kcal
Electronic energy + Delta-G solvation = -20219.523188 eV
Core-core repulsion = 17519.656070 eV
Total energy + Delta-G solvation = -2699.867119 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 269.151 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-39.04997 -36.45962 -33.10752 -32.49662 -31.71277 -28.91853 -26.99890 -25.94268
-24.42504 -23.39156 -21.31865 -20.17506 -19.40637 -18.76586 -16.41269 -16.12864
-15.59769 -14.76695 -14.69082 -14.18026 -14.02540 -13.64416 -13.48011 -13.22152
-12.97160 -12.79598 -12.49085 -12.27833 -11.84497 -11.55047 -11.15490 -10.98204
-10.90127 -10.68599 -10.44895 -10.35823 -10.27448 -10.06839 -10.02147 -9.83113
-9.50310 -9.43188 -8.99612 -8.76912 -8.04732 -7.53225 -7.14056 -6.15270
-4.07866 1.85802 2.76798 3.21459 3.28793 3.31970 4.28814 4.72409
4.92902 5.07017 5.10969 5.15607 5.20818 5.43575 5.52535 5.62686
5.64769 5.70931 5.85245 6.02528 6.05511 6.10999 6.17258 6.29755
6.35369 6.43622 6.47052 6.53853 6.63184 6.67674 6.73338 6.75711
6.95229 7.03594 7.24756 7.35671 7.43138 7.57303 7.94050 8.17246
8.23865 8.47908 8.79929 9.41185 10.85563
Molecular weight = 269.15amu
Principal moments of inertia in cm(-1)
A = 0.023991 B = 0.006781 C = 0.005763
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1166.829386 B = 4128.128192 C = 4857.808782
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 S -0.287 6.287
3 C -0.035 4.035
4 H 0.090 0.910
5 C -0.110 4.110
6 C -0.104 4.104
7 C -0.123 4.123
8 C 0.044 3.956
9 N -0.536 5.536
10 C 0.082 3.918
11 C 0.026 3.974
12 C -0.490 4.490
13 H 0.059 0.941
14 C 0.079 3.921
15 N -0.865 5.865
16 Si 0.879 3.121
17 H -0.277 1.277
18 H -0.285 1.285
19 H -0.271 1.271
20 C -0.202 4.202
21 C -0.222 4.222
22 C 0.087 3.913
23 H 0.073 0.927
24 H 0.073 0.927
25 H 0.094 0.906
26 H 0.050 0.950
27 H 0.066 0.934
28 H 0.072 0.928
29 H 0.053 0.947
30 H 0.057 0.943
31 H 0.052 0.948
32 H 0.057 0.943
33 H 0.094 0.906
34 H 0.037 0.963
35 H 0.129 0.871
36 H 0.265 0.735
37 H 0.063 0.937
38 H 0.073 0.927
39 H 0.069 0.931
40 H 0.077 0.923
41 H 0.048 0.952
42 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.598 -4.445 4.731 12.428
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.287 4.287
2 S -0.059 6.059
3 C -0.165 4.165
4 H 0.108 0.892
5 C -0.149 4.149
6 C -0.144 4.144
7 C -0.161 4.161
8 C -0.083 4.083
9 N -0.259 5.259
10 C -0.045 4.045
11 C 0.024 3.976
12 C -0.526 4.526
13 H 0.077 0.923
14 C -0.125 4.125
15 N -0.501 5.501
16 Si 0.705 3.295
17 H -0.203 1.203
18 H -0.211 1.211
19 H -0.196 1.196
20 C -0.241 4.241
21 C -0.259 4.259
22 C -0.043 4.043
23 H 0.092 0.908
24 H 0.092 0.908
25 H 0.113 0.887
26 H 0.069 0.931
27 H 0.085 0.915
28 H 0.091 0.909
29 H 0.071 0.929
30 H 0.075 0.925
31 H 0.071 0.929
32 H 0.076 0.924
33 H 0.112 0.888
34 H 0.055 0.945
35 H 0.146 0.854
36 H 0.076 0.924
37 H 0.081 0.919
38 H 0.092 0.908
39 H 0.088 0.912
40 H 0.095 0.905
41 H 0.066 0.934
42 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -10.456 -5.022 4.393 12.404
hybrid contribution 0.229 1.325 0.872 1.603
sum -10.227 -3.697 5.265 12.082
Atomic orbital electron populations
1.23330 0.95049 1.05748 1.04580 1.86846 1.06484 1.14556 1.98023
1.22350 1.02529 0.90373 1.01212 0.89210 1.20879 1.00030 0.96720
0.97310 1.21289 0.96794 0.94436 1.01856 1.21476 0.94973 1.01044
0.98604 1.22771 1.01017 0.94972 0.89496 1.60975 1.45773 1.05601
1.13583 1.22124 0.86325 1.05239 0.90802 1.19730 0.94816 0.86380
0.96631 1.20375 1.28626 0.91279 1.12368 0.92283 1.24909 0.94461
0.98568 0.94585 1.69782 1.45645 1.22118 1.12561 0.86854 0.79247
0.81925 0.81427 1.20259 1.21062 1.19573 1.22938 0.98646 1.09321
0.93206 1.23210 1.02308 1.03518 0.96865 1.21657 0.89774 0.92867
1.00007 0.90817 0.90798 0.88694 0.93104 0.91511 0.90906 0.92866
0.92453 0.92878 0.92408 0.88821 0.94460 0.85364 0.92446 0.91871
0.90816 0.91192 0.90459 0.93357 0.90619
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.25 10.37 101.05 1.05 -0.21 16
2 S -0.29 -4.16 21.57 -107.50 -2.32 -6.48 16
3 C -0.04 -0.55 2.27 -29.59 -0.07 -0.61 16
4 H 0.09 1.45 8.08 -51.89 -0.42 1.03 16
5 C -0.11 -1.53 4.50 -29.30 -0.13 -1.66 16
6 C -0.10 -1.49 5.63 -27.17 -0.15 -1.64 16
7 C -0.12 -2.02 5.27 -27.49 -0.14 -2.17 16
8 C 0.04 0.89 4.65 -2.77 -0.01 0.87 16
9 N -0.54 -10.69 4.18 -234.64 -0.98 -11.67 16
10 C 0.08 1.86 5.09 -3.82 -0.02 1.84 16
11 C 0.03 0.62 1.46 -155.66 -0.23 0.39 16
12 C -0.49 -12.52 6.36 -34.44 -0.22 -12.74 16
13 H 0.06 1.55 7.89 -52.49 -0.41 1.13 16
14 C 0.08 2.00 4.39 -17.82 -0.08 1.92 16
15 N -0.87 -22.70 10.91 55.43 0.60 -22.10 16
16 Si 0.88 19.81 29.58 -169.99 -5.03 14.78 16
17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16
18 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16
19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16
20 C -0.20 -4.63 9.88 -26.73 -0.26 -4.89 16
21 C -0.22 -4.80 8.52 -26.73 -0.23 -5.03 16
22 C 0.09 1.58 2.89 -4.70 -0.01 1.57 16
23 H 0.07 0.72 6.98 -51.92 -0.36 0.35 16
24 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16
25 H 0.09 0.87 8.14 -51.92 -0.42 0.44 16
26 H 0.05 0.62 6.55 -51.93 -0.34 0.28 16
27 H 0.07 0.95 7.58 -51.93 -0.39 0.56 16
28 H 0.07 1.12 7.78 -51.93 -0.40 0.72 16
29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
31 H 0.05 0.87 6.66 -51.93 -0.35 0.53 16
32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16
33 H 0.09 2.14 4.43 -51.93 -0.23 1.91 16
34 H 0.04 0.83 7.70 -51.93 -0.40 0.43 16
35 H 0.13 3.25 5.22 -51.93 -0.27 2.98 16
36 H 0.27 6.70 8.32 -40.82 -0.34 6.36 16
37 H 0.06 1.37 8.08 -51.93 -0.42 0.95 16
38 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16
39 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16
40 H 0.08 1.58 5.04 -51.93 -0.26 1.32 16
41 H 0.05 0.92 6.33 -51.93 -0.33 0.60 16
42 H 0.08 1.46 5.12 -51.93 -0.27 1.20 16
LS Contribution 317.62 15.07 4.79 4.79
Total: -1.00 -25.09 317.62 -10.40 -35.49
By element:
Atomic # 1 Polarization: 14.48 SS G_CDS: -6.95 Total: 7.53 kcal
Atomic # 6 Polarization: -21.83 SS G_CDS: -0.51 Total: -22.35 kcal
Atomic # 7 Polarization: -33.39 SS G_CDS: -0.38 Total: -33.76 kcal
Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.78 kcal
Atomic # 16 Polarization: -4.16 SS G_CDS: -2.32 Total: -6.48 kcal
Total LS contribution 4.79 Total: 4.79 kcal
Total: -25.09 -10.40 -35.49 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602795976.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.663 kcal
(2) G-P(sol) polarization free energy of solvation -25.090 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.573 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.399 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.489 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.174 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds