Wall clock time and date at job start Mon Mar 30 2020 01:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 119.99966 * 2 1 4 4 H 1.48505 * 109.47359 * 269.99970 * 3 2 1 5 5 H 1.48503 * 109.47458 * 29.99733 * 3 2 1 6 6 H 1.48502 * 109.47170 * 149.99594 * 3 2 1 7 7 C 1.37873 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00302 * 188.63280 * 7 2 1 9 9 C 1.50696 * 119.99791 * 8.64234 * 7 2 1 10 10 C 1.52997 * 115.56360 * 279.65046 * 9 7 2 11 11 N 1.46904 * 109.46866 * 321.14961 * 10 9 7 12 12 C 1.46901 * 111.00169 * 175.41859 * 11 10 9 13 13 H 1.09000 * 109.47089 * 324.99753 * 12 11 10 14 14 C 1.52997 * 109.47269 * 84.99637 * 12 11 10 15 15 O 1.42902 * 109.47236 * 65.00246 * 14 12 11 16 16 C 1.52999 * 109.47357 * 204.99740 * 12 11 10 17 17 H 1.08999 * 109.52261 * 299.99955 * 16 12 11 18 18 C 1.53169 * 109.52417 * 179.87224 * 16 12 11 19 19 C 1.53187 * 109.03384 * 183.17440 * 18 16 12 20 20 C 1.53100 * 109.20994 * 56.88936 * 19 18 16 21 21 O 1.42901 * 109.41114 * 302.42636 * 20 19 18 22 22 C 1.42896 * 114.10168 * 61.16228 * 21 20 19 23 23 C 1.53004 * 117.50115 * 65.33616 * 9 7 2 24 24 C 1.53002 * 60.03337 * 107.50204 * 23 9 7 25 25 H 0.97007 * 120.00051 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47454 * 81.14629 * 10 9 7 27 27 H 1.08998 * 109.47798 * 201.14937 * 10 9 7 28 28 H 1.00905 * 110.99672 * 299.36951 * 11 10 9 29 29 H 1.09002 * 109.47597 * 184.99853 * 14 12 11 30 30 H 1.08998 * 109.47554 * 305.00494 * 14 12 11 31 31 H 0.96698 * 114.00359 * 180.02562 * 15 14 12 32 32 H 1.09001 * 109.54741 * 302.98385 * 18 16 12 33 33 H 1.09000 * 109.54322 * 63.24727 * 18 16 12 34 34 H 1.08995 * 109.47500 * 296.98750 * 19 18 16 35 35 H 1.09004 * 109.52467 * 176.82053 * 19 18 16 36 36 H 1.08998 * 109.48159 * 182.44017 * 20 19 18 37 37 H 1.08999 * 109.49140 * 62.41145 * 20 19 18 38 38 H 1.09007 * 109.48005 * 178.86108 * 22 21 20 39 39 H 1.08999 * 109.49225 * 58.82391 * 22 21 20 40 40 H 1.09005 * 117.49585 * 0.02562 * 23 9 7 41 41 H 1.08996 * 117.50266 * 215.00077 * 23 9 7 42 42 H 1.09000 * 117.49816 * 107.47395 * 24 23 9 43 43 H 1.08993 * 117.50285 * 252.47890 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0753 -1.1992 0.1409 9 6 1.2639 -2.4917 -0.1950 10 6 0.5631 -3.0456 1.0472 11 7 1.4088 -2.8214 2.2273 12 6 0.7213 -3.2427 3.4553 13 1 -0.3450 -3.0359 3.3640 14 6 0.9334 -4.7426 3.6696 15 8 2.3193 -4.9989 3.9053 16 6 1.2900 -2.4717 4.6482 17 1 2.3563 -2.6779 4.7403 18 6 0.5718 -2.9077 5.9289 19 6 1.0934 -2.0734 7.1030 20 6 0.8866 -0.5877 6.7964 21 8 1.5552 -0.2567 5.5776 22 6 1.0756 -0.9707 4.4364 23 6 0.5894 -2.7233 -1.5487 24 6 1.8548 -3.5014 -1.1822 25 1 -0.4850 0.8401 -0.0004 26 1 -0.3917 -2.5375 1.1827 27 1 0.3911 -4.1145 0.9212 28 1 2.2965 -3.2913 2.1304 29 1 0.3514 -5.0727 4.5301 30 1 0.6094 -5.2859 2.7819 31 1 2.5278 -5.9321 4.0495 32 1 -0.5008 -2.7487 5.8177 33 1 0.7677 -3.9637 6.1153 34 1 2.1557 -2.2713 7.2458 35 1 0.5476 -2.3378 8.0087 36 1 1.2955 0.0117 7.6097 37 1 -0.1790 -0.3825 6.6937 38 1 1.6208 -0.6472 3.5497 39 1 0.0125 -0.7707 4.3027 40 1 0.6819 -1.9371 -2.2981 41 1 -0.3536 -3.2698 -1.5543 42 1 1.7441 -4.5598 -0.9462 43 1 2.7792 -3.2273 -1.6905 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602844965.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:49 Heat of formation + Delta-G solvation = -79.664228 kcal Electronic energy + Delta-G solvation = -22208.842218 eV Core-core repulsion = 19061.372560 eV Total energy + Delta-G solvation = -3147.469658 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.36012 -37.52396 -36.46191 -34.53019 -32.95359 -31.74777 -30.74635 -27.73699 -25.48537 -24.98355 -23.81058 -23.12168 -21.10851 -20.48679 -19.77862 -18.85139 -17.25409 -16.08511 -15.78758 -15.63006 -14.87213 -14.73628 -14.41535 -14.29527 -14.23178 -13.75084 -13.31267 -13.01984 -12.81373 -12.29114 -12.05354 -11.86343 -11.64680 -11.36321 -11.20119 -10.94460 -10.85866 -10.60127 -10.52275 -10.41688 -10.31291 -10.06270 -9.86238 -9.81710 -9.34805 -9.04341 -8.71998 -8.25478 -7.96701 -7.30133 -5.84985 -3.83837 3.43018 3.50577 3.54933 4.29897 4.36278 4.58473 4.87837 4.96063 5.05224 5.15240 5.26524 5.34710 5.40652 5.47092 5.49653 5.59953 5.66041 5.76416 5.82730 5.94392 6.03967 6.10394 6.14159 6.21959 6.25417 6.30962 6.37042 6.57033 6.65314 6.76521 6.80773 6.90768 7.02395 7.13085 7.48965 7.52974 7.65798 7.71021 8.07797 8.14715 8.40444 8.65553 9.11693 9.78401 11.25676 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.015695 B = 0.007427 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.547062 B = 3769.044686 C = 5099.653254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.077 3.923 3 Si 0.882 3.118 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.463 4.463 8 H 0.056 0.944 9 C 0.053 3.947 10 C 0.110 3.890 11 N -0.646 5.646 12 C 0.097 3.903 13 H 0.081 0.919 14 C 0.044 3.956 15 O -0.562 6.562 16 C -0.098 4.098 17 H 0.084 0.916 18 C -0.117 4.117 19 C -0.152 4.152 20 C 0.059 3.941 21 O -0.386 6.386 22 C 0.073 3.927 23 C -0.166 4.166 24 C -0.217 4.217 25 H 0.255 0.745 26 H 0.070 0.930 27 H -0.012 1.012 28 H 0.342 0.658 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.371 0.629 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.044 0.956 38 H 0.121 0.879 39 H 0.042 0.958 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.866 -8.345 11.357 14.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.125 4.125 3 Si 0.710 3.290 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.501 4.501 8 H 0.075 0.925 9 C 0.052 3.948 10 C -0.018 4.018 11 N -0.275 5.275 12 C -0.015 4.015 13 H 0.099 0.901 14 C -0.035 4.035 15 O -0.366 6.366 16 C -0.118 4.118 17 H 0.103 0.897 18 C -0.155 4.155 19 C -0.190 4.190 20 C -0.019 4.019 21 O -0.305 6.305 22 C -0.003 4.003 23 C -0.204 4.204 24 C -0.255 4.255 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.006 0.994 28 H 0.161 0.839 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.216 0.784 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.062 0.938 38 H 0.139 0.861 39 H 0.060 0.940 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.030 -6.750 11.323 13.223 hybrid contribution -0.026 -1.046 -0.065 1.048 sum -1.056 -7.796 11.258 13.734 Atomic orbital electron populations 1.69997 1.05771 1.25861 1.50289 1.24795 0.94585 0.98315 0.94846 0.86764 0.80336 0.84258 0.77611 1.21249 1.21513 1.19826 1.20136 0.92865 0.88360 1.48755 0.92547 1.18901 0.96366 0.93638 0.85849 1.21493 0.96660 0.93288 0.90407 1.60224 1.05877 1.61551 0.99819 1.21645 0.98677 0.88980 0.92156 0.90121 1.23043 0.82454 0.99506 0.98540 1.86528 1.25171 1.30229 1.94692 1.21566 1.01420 0.96075 0.92719 0.89741 1.21678 0.99572 0.99382 0.94916 1.22154 1.02054 0.96525 0.98247 1.22488 0.96676 0.94704 0.87997 1.87962 1.61647 1.64711 1.16176 1.22681 0.99323 0.90064 0.88202 1.22553 0.93152 1.01511 1.03187 1.23054 0.97542 0.95385 1.09490 0.93570 0.91120 0.99421 0.83925 0.94091 0.94104 0.78358 0.92417 0.91931 0.91271 0.91696 0.89777 0.93792 0.86140 0.93995 0.90280 0.92239 0.92221 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.74 13.20 55.43 0.73 -24.01 16 2 C 0.08 2.09 5.41 -17.82 -0.10 2.00 16 3 Si 0.88 21.74 29.55 -169.99 -5.02 16.72 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.46 -12.41 8.11 -34.44 -0.28 -12.69 16 8 H 0.06 1.55 7.83 -52.49 -0.41 1.14 16 9 C 0.05 1.28 1.65 -155.62 -0.26 1.02 16 10 C 0.11 2.39 5.59 -3.82 -0.02 2.37 16 11 N -0.65 -12.82 4.82 -106.73 -0.51 -13.34 16 12 C 0.10 1.58 2.00 -67.71 -0.14 1.45 16 13 H 0.08 1.35 7.73 -51.93 -0.40 0.95 16 14 C 0.04 0.60 6.22 37.16 0.23 0.83 16 15 O -0.56 -7.46 12.15 -35.23 -0.43 -7.89 16 16 C -0.10 -1.56 1.96 -90.48 -0.18 -1.74 16 17 H 0.08 1.49 7.56 -51.93 -0.39 1.10 16 18 C -0.12 -1.52 4.87 -26.55 -0.13 -1.65 16 19 C -0.15 -1.83 6.13 -26.58 -0.16 -1.99 16 20 C 0.06 0.79 6.84 37.21 0.25 1.05 16 21 O -0.39 -6.89 10.76 -35.23 -0.38 -7.27 16 22 C 0.07 1.35 5.93 37.21 0.22 1.57 16 23 C -0.17 -3.87 9.79 -26.73 -0.26 -4.13 16 24 C -0.22 -4.72 9.89 -26.69 -0.26 -4.99 16 25 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 26 H 0.07 1.69 7.94 -51.93 -0.41 1.28 16 27 H -0.01 -0.25 7.26 -51.93 -0.38 -0.62 16 28 H 0.34 6.93 7.99 -39.29 -0.31 6.62 16 29 H 0.04 0.47 6.79 -51.93 -0.35 0.12 16 30 H 0.04 0.56 7.43 -51.93 -0.39 0.18 16 31 H 0.37 3.20 9.12 45.56 0.42 3.61 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.75 6.74 -51.93 -0.35 0.40 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.12 2.62 7.69 -51.93 -0.40 2.22 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 1.96 8.14 -51.93 -0.42 1.54 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 43 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 339.93 15.07 5.12 5.12 Total: -1.00 -29.01 339.93 -8.31 -37.32 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -6.74 Total: 10.26 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -1.08 Total: -16.90 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.22 Total: -37.35 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.81 Total: -15.16 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.01 -8.31 -37.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602844965.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.346 kcal (2) G-P(sol) polarization free energy of solvation -29.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds