Wall clock time and date at job start Mon Mar 30 2020 01:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 119.99966 * 2 1 4 4 H 1.48505 * 109.47359 * 269.99970 * 3 2 1 5 5 H 1.48503 * 109.47458 * 29.99733 * 3 2 1 6 6 H 1.48502 * 109.47170 * 149.99594 * 3 2 1 7 7 C 1.37873 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00302 * 188.63280 * 7 2 1 9 9 C 1.50696 * 119.99791 * 8.64234 * 7 2 1 10 10 C 1.52997 * 115.56360 * 279.65046 * 9 7 2 11 11 N 1.46904 * 109.46866 * 321.14961 * 10 9 7 12 12 C 1.46901 * 111.00169 * 175.41859 * 11 10 9 13 13 H 1.09000 * 109.47089 * 324.99753 * 12 11 10 14 14 C 1.52997 * 109.47269 * 84.99637 * 12 11 10 15 15 O 1.42902 * 109.47236 * 65.00246 * 14 12 11 16 16 C 1.52999 * 109.47357 * 204.99740 * 12 11 10 17 17 H 1.08999 * 109.52261 * 299.99955 * 16 12 11 18 18 C 1.53169 * 109.52417 * 179.87224 * 16 12 11 19 19 C 1.53187 * 109.03384 * 183.17440 * 18 16 12 20 20 C 1.53100 * 109.20994 * 56.88936 * 19 18 16 21 21 O 1.42901 * 109.41114 * 302.42636 * 20 19 18 22 22 C 1.42896 * 114.10168 * 61.16228 * 21 20 19 23 23 C 1.53004 * 117.50115 * 65.33616 * 9 7 2 24 24 C 1.53002 * 60.03337 * 107.50204 * 23 9 7 25 25 H 0.97007 * 120.00051 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47454 * 81.14629 * 10 9 7 27 27 H 1.08998 * 109.47798 * 201.14937 * 10 9 7 28 28 H 1.00905 * 110.99672 * 299.36951 * 11 10 9 29 29 H 1.09002 * 109.47597 * 184.99853 * 14 12 11 30 30 H 1.08998 * 109.47554 * 305.00494 * 14 12 11 31 31 H 0.96698 * 114.00359 * 180.02562 * 15 14 12 32 32 H 1.09001 * 109.54741 * 302.98385 * 18 16 12 33 33 H 1.09000 * 109.54322 * 63.24727 * 18 16 12 34 34 H 1.08995 * 109.47500 * 296.98750 * 19 18 16 35 35 H 1.09004 * 109.52467 * 176.82053 * 19 18 16 36 36 H 1.08998 * 109.48159 * 182.44017 * 20 19 18 37 37 H 1.08999 * 109.49140 * 62.41145 * 20 19 18 38 38 H 1.09007 * 109.48005 * 178.86108 * 22 21 20 39 39 H 1.08999 * 109.49225 * 58.82391 * 22 21 20 40 40 H 1.09005 * 117.49585 * 0.02562 * 23 9 7 41 41 H 1.08996 * 117.50266 * 215.00077 * 23 9 7 42 42 H 1.09000 * 117.49816 * 107.47395 * 24 23 9 43 43 H 1.08993 * 117.50285 * 252.47890 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0753 -1.1992 0.1409 9 6 1.2639 -2.4917 -0.1950 10 6 0.5631 -3.0456 1.0472 11 7 1.4088 -2.8214 2.2273 12 6 0.7213 -3.2427 3.4553 13 1 -0.3450 -3.0359 3.3640 14 6 0.9334 -4.7426 3.6696 15 8 2.3193 -4.9989 3.9053 16 6 1.2900 -2.4717 4.6482 17 1 2.3563 -2.6779 4.7403 18 6 0.5718 -2.9077 5.9289 19 6 1.0934 -2.0734 7.1030 20 6 0.8866 -0.5877 6.7964 21 8 1.5552 -0.2567 5.5776 22 6 1.0756 -0.9707 4.4364 23 6 0.5894 -2.7233 -1.5487 24 6 1.8548 -3.5014 -1.1822 25 1 -0.4850 0.8401 -0.0004 26 1 -0.3917 -2.5375 1.1827 27 1 0.3911 -4.1145 0.9212 28 1 2.2965 -3.2913 2.1304 29 1 0.3514 -5.0727 4.5301 30 1 0.6094 -5.2859 2.7819 31 1 2.5278 -5.9321 4.0495 32 1 -0.5008 -2.7487 5.8177 33 1 0.7677 -3.9637 6.1153 34 1 2.1557 -2.2713 7.2458 35 1 0.5476 -2.3378 8.0087 36 1 1.2955 0.0117 7.6097 37 1 -0.1790 -0.3825 6.6937 38 1 1.6208 -0.6472 3.5497 39 1 0.0125 -0.7707 4.3027 40 1 0.6819 -1.9371 -2.2981 41 1 -0.3536 -3.2698 -1.5543 42 1 1.7441 -4.5598 -0.9462 43 1 2.7792 -3.2273 -1.6905 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602844965.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:48 Heat of formation + Delta-G solvation = -100.131759 kcal Electronic energy + Delta-G solvation = -22209.729757 eV Core-core repulsion = 19061.372560 eV Total energy + Delta-G solvation = -3148.357197 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.61552 -38.94959 -37.98913 -35.79841 -34.22390 -33.83284 -32.04694 -29.03734 -27.41021 -26.39548 -25.26268 -24.37390 -22.89930 -21.70376 -21.19038 -20.59564 -18.36403 -17.81204 -17.13703 -16.92767 -16.59058 -16.17668 -16.03588 -15.59983 -15.49430 -15.13533 -14.70931 -14.66765 -14.21311 -13.61942 -13.51749 -13.40296 -12.98966 -12.95273 -12.86920 -12.64955 -12.40559 -12.34911 -12.03029 -11.95022 -11.78942 -11.56966 -11.18583 -11.13193 -10.85270 -10.64614 -10.30487 -10.28273 -9.84540 -8.79747 -7.96271 -5.97819 1.41991 1.46188 1.53272 2.52455 3.05319 3.22667 3.36538 3.54788 3.70963 3.83568 3.97545 4.05350 4.09648 4.27685 4.38598 4.42860 4.45111 4.50858 4.53863 4.64875 4.70986 4.72729 4.81161 4.83733 4.96059 4.97969 5.01479 5.04833 5.16526 5.18501 5.20608 5.30894 5.45956 5.53088 5.65185 5.73477 5.93947 6.38202 6.47694 6.66466 6.86840 6.97782 7.02760 7.65491 9.13146 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.015695 B = 0.007427 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.547062 B = 3769.044686 C = 5099.653254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.038 3.962 3 Si 0.928 3.072 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.465 4.465 8 H 0.042 0.958 9 C 0.024 3.976 10 C 0.128 3.872 11 N -0.662 5.662 12 C 0.093 3.907 13 H 0.074 0.926 14 C 0.056 3.944 15 O -0.579 6.579 16 C -0.086 4.086 17 H 0.066 0.934 18 C -0.112 4.112 19 C -0.146 4.146 20 C 0.048 3.952 21 O -0.413 6.413 22 C 0.081 3.919 23 C -0.171 4.171 24 C -0.192 4.192 25 H 0.252 0.748 26 H 0.041 0.959 27 H 0.007 0.993 28 H 0.338 0.662 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.393 0.607 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.033 0.967 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.946 -10.169 13.015 16.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.162 4.162 3 Si 0.756 3.244 4 H -0.207 1.207 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.504 4.504 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.001 4.001 11 N -0.291 5.291 12 C -0.017 4.017 13 H 0.092 0.908 14 C -0.023 4.023 15 O -0.386 6.386 16 C -0.106 4.106 17 H 0.085 0.915 18 C -0.150 4.150 19 C -0.184 4.184 20 C -0.029 4.029 21 O -0.332 6.332 22 C 0.005 3.995 23 C -0.209 4.209 24 C -0.229 4.229 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.025 0.975 28 H 0.157 0.843 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.242 0.758 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.051 0.949 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.099 -8.596 12.989 15.614 hybrid contribution 0.046 -0.464 -0.541 0.714 sum -1.053 -9.059 12.448 15.432 Atomic orbital electron populations 1.70080 1.06526 1.25984 1.51603 1.25290 0.95192 1.00524 0.95166 0.86038 0.79172 0.81680 0.77524 1.20735 1.21787 1.20088 1.20291 0.92329 0.89952 1.47804 0.94026 1.19056 0.97615 0.93780 0.87223 1.21151 0.95156 0.93675 0.90111 1.60103 1.05838 1.62660 1.00537 1.21686 0.97825 0.91571 0.90661 0.90821 1.22798 0.83108 0.96678 0.99745 1.86483 1.24914 1.32497 1.94731 1.21417 1.00739 0.94019 0.94390 0.91506 1.21666 0.99524 1.00569 0.93269 1.22130 1.02282 0.94888 0.99080 1.22818 0.96945 0.96547 0.86552 1.87905 1.62576 1.65350 1.17381 1.22382 0.97730 0.91998 0.87438 1.22476 0.94663 1.01655 1.02142 1.23038 0.96489 0.96295 1.07077 0.93936 0.94005 0.97498 0.84307 0.91280 0.94176 0.75815 0.91684 0.90001 0.91692 0.88444 0.87738 0.93146 0.90594 0.94894 0.92516 0.90928 0.89412 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.99 13.20 21.44 0.28 -51.70 16 2 C 0.04 2.11 5.41 84.65 0.46 2.57 16 3 Si 0.93 45.73 29.55 68.60 2.03 47.76 16 4 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 5 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 7 C -0.47 -25.45 8.11 25.60 0.21 -25.24 16 8 H 0.04 2.35 7.83 -2.91 -0.02 2.32 16 9 C 0.02 1.15 1.65 -52.90 -0.09 1.07 16 10 C 0.13 5.56 5.59 86.30 0.48 6.04 16 11 N -0.66 -26.50 4.82 -491.57 -2.37 -28.87 16 12 C 0.09 2.97 2.00 44.91 0.09 3.06 16 13 H 0.07 2.45 7.73 -2.39 -0.02 2.43 16 14 C 0.06 1.36 6.22 71.98 0.45 1.81 16 15 O -0.58 -13.88 12.15 -148.98 -1.81 -15.69 16 16 C -0.09 -2.69 1.96 -10.70 -0.02 -2.71 16 17 H 0.07 2.33 7.56 -2.39 -0.02 2.32 16 18 C -0.11 -2.60 4.87 30.71 0.15 -2.45 16 19 C -0.15 -3.08 6.13 30.69 0.19 -2.89 16 20 C 0.05 1.20 6.84 72.02 0.49 1.70 16 21 O -0.41 -14.84 10.76 -148.98 -1.60 -16.45 16 22 C 0.08 3.07 5.93 72.02 0.43 3.50 16 23 C -0.17 -7.93 9.79 30.60 0.30 -7.63 16 24 C -0.19 -8.05 9.89 30.62 0.30 -7.75 16 25 H 0.25 14.14 8.31 -92.70 -0.77 13.37 16 26 H 0.04 2.03 7.94 -2.39 -0.02 2.01 16 27 H 0.01 0.28 7.26 -2.39 -0.02 0.26 16 28 H 0.34 13.72 7.99 -89.69 -0.72 13.00 16 29 H 0.07 1.32 6.79 -2.39 -0.02 1.30 16 30 H 0.04 0.99 7.43 -2.39 -0.02 0.97 16 31 H 0.39 5.50 9.12 -74.06 -0.68 4.82 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 1.61 6.74 -2.39 -0.02 1.60 16 34 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.08 3.52 7.69 -2.38 -0.02 3.50 16 39 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.06 2.84 8.14 -2.38 -0.02 2.82 16 41 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 42 H 0.09 3.19 8.08 -2.39 -0.02 3.17 16 43 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -63.83 339.93 -0.43 -64.26 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: -0.40 Total: 29.62 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: 3.44 Total: -28.93 kcal Atomic # 7 Polarization: -78.49 SS G_CDS: -2.09 Total: -80.57 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -3.41 Total: -32.14 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -63.83 -0.43 -64.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602844965.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.870 kcal (2) G-P(sol) polarization free energy of solvation -63.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds