Wall clock time and date at job start Mon Mar 30 2020 01:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86806 * 120.00002 * 2 1 4 4 H 1.48496 * 109.46996 * 273.38279 * 3 2 1 5 5 H 1.48501 * 109.47056 * 33.37999 * 3 2 1 6 6 H 1.48502 * 109.46985 * 153.38076 * 3 2 1 7 7 C 1.37882 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99772 * 4.01961 * 7 2 1 9 9 C 1.50693 * 120.00232 * 184.02187 * 7 2 1 10 10 C 1.53003 * 115.55139 * 85.42385 * 9 7 2 11 11 N 1.46903 * 109.47203 * 39.58371 * 10 9 7 12 12 C 1.46891 * 111.00551 * 174.56161 * 11 10 9 13 13 H 1.09006 * 109.47171 * 37.33896 * 12 11 10 14 14 C 1.53003 * 109.47051 * 277.34437 * 12 11 10 15 15 O 1.42900 * 109.46935 * 294.99442 * 14 12 11 16 16 C 1.52994 * 109.47558 * 157.34252 * 12 11 10 17 17 H 1.08994 * 109.52264 * 54.65583 * 16 12 11 18 18 C 1.53183 * 109.52273 * 174.78845 * 16 12 11 19 19 C 1.53191 * 109.03057 * 176.82193 * 18 16 12 20 20 C 1.53086 * 109.21370 * 303.11274 * 19 18 16 21 21 O 1.42904 * 109.41720 * 57.57328 * 20 19 18 22 22 C 1.42900 * 114.09793 * 298.84187 * 21 20 19 23 23 C 1.52998 * 117.51984 * 231.12403 * 9 7 2 24 24 C 1.52995 * 60.00032 * 107.48078 * 23 9 7 25 25 H 0.97000 * 120.00470 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46914 * 279.58627 * 10 9 7 27 27 H 1.09001 * 109.47479 * 159.58553 * 10 9 7 28 28 H 1.00904 * 110.99783 * 298.51657 * 11 10 9 29 29 H 1.09002 * 109.47526 * 54.99689 * 14 12 11 30 30 H 1.09004 * 109.47423 * 174.99772 * 14 12 11 31 31 H 0.96701 * 114.00346 * 179.97438 * 15 14 12 32 32 H 1.08999 * 109.54134 * 296.74840 * 18 16 12 33 33 H 1.08996 * 109.54483 * 57.01973 * 18 16 12 34 34 H 1.09001 * 109.52372 * 183.17278 * 19 18 16 35 35 H 1.09002 * 109.52318 * 63.04731 * 19 18 16 36 36 H 1.09002 * 109.48294 * 297.59111 * 20 19 18 37 37 H 1.08999 * 109.48016 * 177.55877 * 20 19 18 38 38 H 1.08998 * 109.48570 * 301.17522 * 22 21 20 39 39 H 1.09005 * 109.47997 * 181.14033 * 22 21 20 40 40 H 1.09008 * 117.50102 * 214.97363 * 23 9 7 41 41 H 1.09000 * 117.50014 * 359.97438 * 23 9 7 42 42 H 1.08998 * 117.50450 * 252.50926 * 24 23 9 43 43 H 1.09005 * 117.51625 * 107.47869 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4250 2.0877 -1.3976 5 1 1.4841 2.6310 0.7703 6 1 3.5806 1.4206 0.6273 7 6 2.0046 -1.1940 -0.0005 8 1 1.4666 -2.1282 -0.0665 9 6 3.5087 -1.1956 0.0910 10 6 4.0837 -1.1351 1.5076 11 7 3.2753 -1.9760 2.4005 12 6 3.8717 -2.0456 3.7411 13 1 4.2987 -1.0765 3.9996 14 6 4.9727 -3.1080 3.7550 15 8 4.3949 -4.3956 3.5311 16 6 2.7928 -2.4159 4.7608 17 1 2.3001 -3.3375 4.4513 18 6 3.4359 -2.6161 6.1366 19 6 2.3375 -2.9079 7.1637 20 6 1.3233 -1.7612 7.1564 21 8 0.7866 -1.6101 5.8406 22 6 1.7611 -1.2880 4.8463 23 6 4.2794 -2.0099 -0.9500 24 6 4.2847 -0.4815 -1.0175 25 1 -0.4851 0.8400 0.0004 26 1 4.0655 -0.1050 1.8634 27 1 5.1114 -1.4982 1.4984 28 1 2.3231 -1.6450 2.4451 29 1 5.6957 -2.8924 2.9683 30 1 5.4748 -3.0984 4.7225 31 1 5.0363 -5.1192 3.5265 32 1 4.1304 -3.4552 6.0958 33 1 3.9715 -1.7114 6.4239 34 1 2.7805 -2.9961 8.1557 35 1 1.8351 -3.8401 6.9050 36 1 1.8176 -0.8369 7.4556 37 1 0.5167 -1.9848 7.8546 38 1 2.2612 -0.3576 5.1153 39 1 1.2698 -1.1708 3.8803 40 1 5.1961 -2.5026 -0.6257 41 1 3.6985 -2.5451 -1.7012 42 1 3.7073 -0.0107 -1.8131 43 1 5.2046 0.0318 -0.7374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602844966.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:51 Heat of formation + Delta-G solvation = -74.697217 kcal Electronic energy + Delta-G solvation = -22173.334606 eV Core-core repulsion = 19026.080333 eV Total energy + Delta-G solvation = -3147.254273 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.60387 -37.59439 -36.65040 -34.68450 -33.13869 -32.03898 -30.88963 -27.97387 -25.87806 -25.21946 -24.01418 -23.22058 -21.54717 -20.56629 -19.71413 -18.83056 -17.14830 -16.48633 -15.99695 -15.92909 -15.19386 -14.81968 -14.70970 -14.45027 -13.90768 -13.81213 -13.42752 -13.28739 -12.78827 -12.67071 -12.45218 -12.38506 -11.92184 -11.71071 -11.17021 -11.06700 -11.04959 -10.84628 -10.60487 -10.47977 -10.35677 -10.03092 -9.94715 -9.65216 -9.39935 -9.23693 -8.98123 -8.56903 -8.35532 -7.47623 -6.05187 -4.05949 3.29286 3.39522 3.43735 4.02247 4.45130 4.46882 4.71062 4.81932 4.91359 4.96232 5.00759 5.15951 5.25170 5.25919 5.41065 5.49671 5.55262 5.63526 5.71474 5.79144 5.83677 5.86172 5.90395 6.01861 6.09292 6.11131 6.16755 6.24177 6.32961 6.45811 6.53525 6.57098 6.67073 6.80982 7.09122 7.20934 7.36367 7.80600 7.88712 8.01215 8.30499 8.62986 9.03836 9.57987 11.06232 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018447 B = 0.006733 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.488990 B = 4157.709135 C = 5142.863500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.872 3.128 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.257 1.257 7 C -0.474 4.474 8 H 0.081 0.919 9 C 0.011 3.989 10 C 0.097 3.903 11 N -0.658 5.658 12 C 0.091 3.909 13 H 0.043 0.957 14 C 0.091 3.909 15 O -0.549 6.549 16 C -0.114 4.114 17 H 0.099 0.901 18 C -0.114 4.114 19 C -0.154 4.154 20 C 0.058 3.942 21 O -0.377 6.377 22 C 0.059 3.941 23 C -0.174 4.174 24 C -0.208 4.208 25 H 0.263 0.737 26 H 0.018 0.982 27 H 0.045 0.955 28 H 0.359 0.641 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.365 0.635 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.089 0.911 38 H 0.044 0.956 39 H 0.105 0.895 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.735 -3.758 13.130 16.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.128 4.128 3 Si 0.700 3.300 4 H -0.207 1.207 5 H -0.224 1.224 6 H -0.182 1.182 7 C -0.512 4.512 8 H 0.099 0.901 9 C 0.010 3.990 10 C -0.033 4.033 11 N -0.293 5.293 12 C -0.020 4.020 13 H 0.060 0.940 14 C 0.013 3.987 15 O -0.352 6.352 16 C -0.133 4.133 17 H 0.117 0.883 18 C -0.151 4.151 19 C -0.192 4.192 20 C -0.019 4.019 21 O -0.295 6.295 22 C -0.018 4.018 23 C -0.211 4.211 24 C -0.246 4.246 25 H 0.073 0.927 26 H 0.035 0.965 27 H 0.063 0.937 28 H 0.183 0.817 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.209 0.791 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.107 0.893 38 H 0.062 0.938 39 H 0.123 0.877 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.073 -3.871 12.846 16.196 hybrid contribution 1.207 1.678 0.279 2.086 sum 10.280 -2.192 13.125 16.816 Atomic orbital electron populations 1.69903 1.06177 1.26844 1.50462 1.24988 0.94526 0.98693 0.94547 0.86983 0.80737 0.83923 0.78365 1.20689 1.22354 1.18167 1.20275 0.86679 0.94390 1.49862 0.90092 1.19350 0.94573 0.98724 0.86360 1.21628 0.94836 0.92868 0.93927 1.60324 1.06719 1.56224 1.06062 1.21507 0.94434 0.95349 0.90662 0.93952 1.22175 0.94790 0.84304 0.97457 1.86661 1.37228 1.15631 1.95633 1.21775 0.96267 1.01118 0.94144 0.88299 1.21641 0.97597 1.01540 0.94370 1.22174 0.97557 1.00070 0.99355 1.22551 0.97090 0.96878 0.85391 1.87987 1.33824 1.91125 1.16586 1.22792 0.90714 0.95557 0.92745 1.22770 1.01220 0.92409 1.04712 1.22982 1.01756 0.95041 1.04848 0.92704 0.96452 0.93664 0.81701 0.94163 0.94562 0.79075 0.91167 0.92506 0.91392 0.90913 0.93686 0.89286 0.93809 0.87705 0.91293 0.89848 0.89753 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.80 13.96 55.43 0.77 -26.03 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 21.40 25.14 -169.99 -4.27 17.13 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.26 -5.97 5.29 56.52 0.30 -5.67 16 7 C -0.47 -12.93 8.07 -34.44 -0.28 -13.21 16 8 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 9 C 0.01 0.26 1.19 -155.66 -0.19 0.07 16 10 C 0.10 1.99 5.41 -3.82 -0.02 1.97 16 11 N -0.66 -13.06 6.01 -106.73 -0.64 -13.70 16 12 C 0.09 1.44 2.03 -67.72 -0.14 1.31 16 13 H 0.04 0.65 7.89 -51.93 -0.41 0.24 16 14 C 0.09 1.25 6.12 37.16 0.23 1.48 16 15 O -0.55 -7.93 12.83 -35.23 -0.45 -8.38 16 16 C -0.11 -1.71 1.82 -90.48 -0.16 -1.88 16 17 H 0.10 1.73 7.74 -51.93 -0.40 1.33 16 18 C -0.11 -1.35 4.71 -26.54 -0.13 -1.48 16 19 C -0.15 -1.69 6.13 -26.59 -0.16 -1.85 16 20 C 0.06 0.70 6.84 37.20 0.25 0.96 16 21 O -0.38 -6.13 10.77 -35.23 -0.38 -6.51 16 22 C 0.06 0.95 5.91 37.21 0.22 1.17 16 23 C -0.17 -3.65 9.88 -26.73 -0.26 -3.92 16 24 C -0.21 -4.49 7.37 -26.73 -0.20 -4.69 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.02 0.37 6.63 -51.93 -0.34 0.03 16 27 H 0.04 0.85 6.90 -51.93 -0.36 0.50 16 28 H 0.36 7.89 5.54 -39.29 -0.22 7.67 16 29 H 0.04 0.57 7.13 -51.93 -0.37 0.20 16 30 H 0.04 0.41 6.73 -51.93 -0.35 0.06 16 31 H 0.36 3.52 9.12 45.56 0.42 3.94 16 32 H 0.07 0.79 6.67 -51.93 -0.35 0.45 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.10 1.96 6.53 -51.93 -0.34 1.62 16 40 H 0.07 1.30 8.08 -51.92 -0.42 0.88 16 41 H 0.08 1.79 8.14 -51.93 -0.42 1.36 16 42 H 0.08 1.91 7.11 -51.93 -0.37 1.54 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 326.76 15.07 4.92 4.92 Total: -1.00 -30.74 326.76 -7.53 -38.28 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -6.55 Total: 12.38 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -0.93 Total: -18.08 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.13 Total: -39.73 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.83 Total: -14.90 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.27 Total: 17.13 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.74 -7.53 -38.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602844966.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.420 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds