Wall clock time and date at job start Mon Mar 30 2020 01:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00005 * 2 1 4 4 H 1.48501 * 109.46993 * 270.25364 * 3 2 1 5 5 H 1.48501 * 109.46864 * 30.25375 * 3 2 1 6 6 H 1.48497 * 109.47015 * 150.25243 * 3 2 1 7 7 C 1.37878 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00595 * 1.63682 * 7 2 1 9 9 C 1.50699 * 119.99591 * 181.64303 * 7 2 1 10 10 C 1.53001 * 115.56322 * 86.07247 * 9 7 2 11 11 N 1.46898 * 109.46991 * 35.94421 * 10 9 7 12 12 C 1.46907 * 110.99944 * 185.00687 * 11 10 9 13 13 H 1.08996 * 109.46796 * 34.29782 * 12 11 10 14 14 C 1.53005 * 109.47126 * 274.29823 * 12 11 10 15 15 O 1.42900 * 109.46493 * 294.90409 * 14 12 11 16 16 C 1.52998 * 109.47165 * 154.29241 * 12 11 10 17 17 H 1.09000 * 109.51563 * 65.30172 * 16 12 11 18 18 C 1.53168 * 109.52453 * 305.11601 * 16 12 11 19 19 C 1.53180 * 109.03877 * 183.10923 * 18 16 12 20 20 C 1.53096 * 109.15667 * 56.98120 * 19 18 16 21 21 O 1.42903 * 109.41625 * 302.38692 * 20 19 18 22 22 C 1.42909 * 114.09213 * 61.16083 * 21 20 19 23 23 C 1.53002 * 117.49876 * 300.37851 * 9 7 2 24 24 C 1.52994 * 60.00332 * 252.51339 * 23 9 7 25 25 H 0.97004 * 120.00492 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47065 * 155.94344 * 10 9 7 27 27 H 1.08994 * 109.47336 * 275.93886 * 10 9 7 28 28 H 1.00894 * 111.00189 * 61.05737 * 11 10 9 29 29 H 1.08999 * 109.47216 * 54.90244 * 14 12 11 30 30 H 1.09000 * 109.46825 * 174.90821 * 14 12 11 31 31 H 0.96710 * 113.99518 * 179.97438 * 15 14 12 32 32 H 1.08997 * 109.54633 * 302.97993 * 18 16 12 33 33 H 1.09003 * 109.54484 * 63.24344 * 18 16 12 34 34 H 1.09001 * 109.52435 * 297.07772 * 19 18 16 35 35 H 1.08994 * 109.57521 * 176.91210 * 19 18 16 36 36 H 1.09010 * 109.47547 * 182.41358 * 20 19 18 37 37 H 1.08997 * 109.49449 * 62.38086 * 20 19 18 38 38 H 1.09008 * 109.47734 * 178.85621 * 22 21 20 39 39 H 1.09001 * 109.48575 * 58.83333 * 22 21 20 40 40 H 1.09001 * 117.50015 * 145.01923 * 23 9 7 41 41 H 1.09003 * 117.49776 * 0.02562 * 23 9 7 42 42 H 1.09003 * 117.49743 * 107.48570 * 24 23 9 43 43 H 1.09000 * 117.50160 * 252.48489 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4913 2.0495 -1.4001 5 1 1.4492 2.6511 0.7054 6 1 3.5493 1.4386 0.6947 7 6 2.0045 -1.1941 -0.0005 8 1 1.4649 -2.1292 -0.0277 9 6 3.5110 -1.1943 0.0369 10 6 4.1368 -1.1203 1.4311 11 7 3.3127 -1.8822 2.3788 12 6 3.8170 -1.7362 3.7508 13 1 4.2236 -0.7336 3.8836 14 6 4.9166 -2.7699 4.0027 15 8 4.3572 -4.0836 3.9454 16 6 2.6721 -1.9575 4.7413 17 1 2.3273 -2.9894 4.6745 18 6 1.5172 -1.0079 4.4093 19 6 0.4099 -1.1837 5.4530 20 6 0.9887 -0.9293 6.8473 21 8 2.0780 -1.8246 7.0800 22 6 3.1636 -1.6734 6.1630 23 6 4.2462 -0.4909 -1.1058 24 6 4.2439 -2.0186 -1.0236 25 1 -0.4851 0.8400 0.0004 26 1 5.1411 -1.5429 1.4015 27 1 4.1899 -0.0796 1.7507 28 1 3.2622 -2.8544 2.1138 29 1 5.6899 -2.6707 3.2411 30 1 5.3529 -2.6035 4.9876 31 1 4.9990 -4.7913 4.0960 32 1 1.8749 0.0215 4.4270 33 1 1.1256 -1.2421 3.4193 34 1 0.0182 -2.1996 5.4010 35 1 -0.3931 -0.4732 5.2568 36 1 0.2155 -1.0949 7.5976 37 1 1.3435 0.0993 6.9117 38 1 3.9572 -2.3749 6.4204 39 1 3.5470 -0.6545 6.2183 40 1 5.1756 0.0248 -0.8642 41 1 3.6401 -0.0275 -1.8843 42 1 3.6362 -2.5607 -1.7482 43 1 5.1719 -2.5082 -0.7283 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602844969.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:54 Heat of formation + Delta-G solvation = -97.868694 kcal Electronic energy + Delta-G solvation = -22269.253487 eV Core-core repulsion = 19120.994424 eV Total energy + Delta-G solvation = -3148.259063 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.64660 -39.13564 -38.09741 -35.92612 -34.11449 -33.94515 -32.42262 -29.01487 -27.61211 -26.32687 -25.37205 -24.46011 -23.27573 -21.66113 -21.17068 -20.54317 -18.44822 -17.98781 -17.22214 -16.98019 -16.89620 -16.10910 -15.90093 -15.70276 -15.43211 -15.11787 -14.78039 -14.70419 -14.43606 -14.31124 -13.70485 -13.47902 -13.11954 -13.04405 -12.84322 -12.62707 -12.36141 -12.09428 -12.06243 -11.92283 -11.75039 -11.44508 -11.28053 -11.18466 -10.92738 -10.76323 -10.49698 -10.28776 -10.15263 -8.84175 -8.11959 -6.12079 1.38079 1.40344 1.51375 2.47532 2.95826 3.11071 3.26180 3.35053 3.66273 3.78743 3.95968 4.07739 4.15677 4.26056 4.29826 4.33447 4.37719 4.39911 4.46262 4.50780 4.59551 4.65463 4.68713 4.75386 4.82424 4.87290 4.88665 4.97119 5.07128 5.11551 5.16177 5.25423 5.40801 5.51858 5.56747 5.63728 5.84500 6.26072 6.42020 6.57926 6.77198 6.91859 6.97708 7.53145 9.04811 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017580 B = 0.007212 C = 0.005710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.373397 B = 3881.716631 C = 4902.852580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.023 3.977 3 Si 0.935 3.065 4 H -0.281 1.281 5 H -0.308 1.308 6 H -0.233 1.233 7 C -0.436 4.436 8 H 0.025 0.975 9 C -0.023 4.023 10 C 0.108 3.892 11 N -0.666 5.666 12 C 0.091 3.909 13 H 0.085 0.915 14 C 0.051 3.949 15 O -0.582 6.582 16 C -0.091 4.091 17 H 0.064 0.936 18 C -0.105 4.105 19 C -0.155 4.155 20 C 0.064 3.936 21 O -0.398 6.398 22 C 0.071 3.929 23 C -0.199 4.199 24 C -0.168 4.168 25 H 0.257 0.743 26 H 0.030 0.970 27 H 0.052 0.948 28 H 0.341 0.659 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.393 0.607 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.057 0.943 38 H 0.106 0.894 39 H 0.057 0.943 40 H 0.099 0.901 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.274 -2.518 12.533 17.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.172 4.172 3 Si 0.762 3.238 4 H -0.208 1.208 5 H -0.236 1.236 6 H -0.156 1.156 7 C -0.474 4.474 8 H 0.043 0.957 9 C -0.024 4.024 10 C -0.021 4.021 11 N -0.296 5.296 12 C -0.020 4.020 13 H 0.103 0.897 14 C -0.028 4.028 15 O -0.390 6.390 16 C -0.111 4.111 17 H 0.082 0.918 18 C -0.143 4.143 19 C -0.192 4.192 20 C -0.012 4.012 21 O -0.317 6.317 22 C -0.006 4.006 23 C -0.237 4.237 24 C -0.205 4.205 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.160 0.840 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.243 0.757 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.127 0.873 37 H 0.076 0.924 38 H 0.123 0.877 39 H 0.075 0.925 40 H 0.117 0.883 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.125 -1.712 12.626 16.915 hybrid contribution 0.785 0.181 -0.784 1.124 sum 11.910 -1.530 11.842 16.864 Atomic orbital electron populations 1.70061 1.08173 1.27026 1.54505 1.25573 0.94913 1.02049 0.94703 0.85989 0.80260 0.79495 0.78014 1.20750 1.23625 1.15570 1.20074 0.88600 0.91918 1.46857 0.95663 1.19499 0.92835 1.01717 0.88343 1.21514 0.92255 0.96871 0.91488 1.60068 1.53291 1.16056 1.00166 1.21731 0.93019 0.97700 0.89535 0.89738 1.22881 0.95357 0.83704 1.00856 1.86504 1.40895 1.16056 1.95521 1.21483 0.95434 0.99707 0.94455 0.91764 1.21373 0.95772 0.98365 0.98749 1.22190 0.98747 1.02089 0.96219 1.22661 0.89293 0.93190 0.96103 1.87867 1.28905 1.60888 1.54042 1.22698 0.88949 1.01562 0.87415 1.22975 1.02039 0.95631 1.03046 1.22900 1.01612 0.92545 1.03465 0.93442 0.95213 0.92950 0.84031 0.93402 0.91183 0.75735 0.93436 0.93156 0.92337 0.91141 0.87349 0.92440 0.87650 0.92469 0.88266 0.91326 0.90943 0.87978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.84 13.96 21.45 0.30 -60.54 16 2 C 0.02 1.34 5.47 84.65 0.46 1.81 16 3 Si 0.94 45.46 25.11 68.60 1.72 47.18 16 4 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 5 H -0.31 -15.36 7.11 99.48 0.71 -14.65 16 6 H -0.23 -10.10 5.34 99.48 0.53 -9.57 16 7 C -0.44 -24.47 8.66 25.60 0.22 -24.25 16 8 H 0.03 1.62 8.06 -2.91 -0.02 1.60 16 9 C -0.02 -1.00 1.21 -52.93 -0.06 -1.07 16 10 C 0.11 4.07 5.43 86.30 0.47 4.53 16 11 N -0.67 -25.09 4.55 -491.56 -2.23 -27.32 16 12 C 0.09 2.65 2.00 44.91 0.09 2.74 16 13 H 0.08 2.37 7.71 -2.39 -0.02 2.35 16 14 C 0.05 1.13 6.35 71.98 0.46 1.58 16 15 O -0.58 -13.61 12.05 -148.98 -1.80 -15.40 16 16 C -0.09 -2.78 2.03 -10.71 -0.02 -2.80 16 17 H 0.06 2.25 7.39 -2.39 -0.02 2.23 16 18 C -0.10 -3.74 5.04 30.71 0.15 -3.59 16 19 C -0.15 -4.72 6.14 30.69 0.19 -4.53 16 20 C 0.06 1.59 6.84 72.01 0.49 2.08 16 21 O -0.40 -10.97 10.77 -148.98 -1.60 -12.57 16 22 C 0.07 1.74 5.83 72.01 0.42 2.16 16 23 C -0.20 -7.90 7.55 30.59 0.23 -7.67 16 24 C -0.17 -6.38 9.88 30.59 0.30 -6.08 16 25 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 26 H 0.03 0.95 7.29 -2.39 -0.02 0.94 16 27 H 0.05 2.04 6.26 -2.39 -0.01 2.03 16 28 H 0.34 13.47 7.99 -89.70 -0.72 12.75 16 29 H 0.05 1.00 7.48 -2.39 -0.02 0.98 16 30 H 0.07 1.16 6.89 -2.39 -0.02 1.15 16 31 H 0.39 5.30 9.12 -74.05 -0.68 4.63 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.05 2.30 7.60 -2.39 -0.02 2.28 16 34 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16 37 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.11 2.19 6.83 -2.38 -0.02 2.17 16 39 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 41 H 0.07 2.97 7.18 -2.39 -0.02 2.95 16 42 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 43 H 0.10 3.19 8.06 -2.39 -0.02 3.17 16 Total: -1.00 -69.25 329.68 -0.78 -70.03 By element: Atomic # 1 Polarization: 34.27 SS G_CDS: -0.57 Total: 33.71 kcal Atomic # 6 Polarization: -38.48 SS G_CDS: 3.40 Total: -35.08 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -1.94 Total: -87.87 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -3.40 Total: -27.97 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.72 Total: 47.18 kcal Total: -69.25 -0.78 -70.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602844969.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.838 kcal (2) G-P(sol) polarization free energy of solvation -69.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds