Wall clock time and date at job start Mon Mar 30 2020 00:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39378 * 119.50377 * 2 1 4 4 C 1.36094 * 120.98929 * 179.71882 * 3 2 1 5 5 C 1.40540 * 119.65364 * 0.26135 * 4 3 2 6 6 C 1.40544 * 121.28946 * 180.02562 * 5 4 3 7 7 C 1.36088 * 119.65578 * 179.97438 * 6 5 4 8 8 C 1.39379 * 120.98685 * 359.97438 * 7 6 5 9 9 C 1.36085 * 120.99106 * 359.97438 * 8 7 6 10 10 C 1.40540 * 119.65580 * 0.02562 * 9 8 7 11 11 C 1.36091 * 119.50906 * 180.22851 * 2 1 3 12 12 C 1.50699 * 120.17231 * 0.03087 * 11 2 1 13 13 N 1.46908 * 109.46992 * 270.22143 * 12 11 2 14 14 C 1.46902 * 110.99876 * 179.97438 * 13 12 11 15 15 H 1.09000 * 109.47259 * 325.01028 * 14 13 12 16 16 C 1.53006 * 109.46629 * 85.00241 * 14 13 12 17 17 C 1.50692 * 109.47068 * 204.99974 * 14 13 12 18 18 H 1.08005 * 120.00361 * 0.02562 * 17 14 13 19 19 C 1.37884 * 119.99969 * 180.02562 * 17 14 13 20 20 N 1.31516 * 119.99844 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 120.00037 * 180.02562 * 19 17 14 22 22 H 1.48496 * 109.47263 * 89.99678 * 21 19 17 23 23 H 1.48503 * 109.46937 * 209.99934 * 21 19 17 24 24 H 1.48504 * 109.47087 * 329.99079 * 21 19 17 25 25 H 1.09004 * 109.47144 * 89.99555 * 1 2 3 26 26 H 1.08997 * 109.47300 * 209.99562 * 1 2 3 27 27 H 1.09005 * 109.47215 * 329.99989 * 1 2 3 28 28 H 1.08002 * 119.50870 * 0.02562 * 3 2 1 29 29 H 1.07997 * 120.17304 * 180.23658 * 4 3 2 30 30 H 1.07997 * 120.17079 * 359.96699 * 6 5 4 31 31 H 1.07993 * 119.50654 * 179.97438 * 7 6 5 32 32 H 1.08001 * 119.50522 * 179.97438 * 8 7 6 33 33 H 1.08001 * 120.17815 * 180.02562 * 9 8 7 34 34 H 1.09003 * 109.47387 * 30.22169 * 12 11 2 35 35 H 1.09001 * 109.47111 * 150.22371 * 12 11 2 36 36 H 1.00894 * 111.00081 * 303.95526 * 13 12 11 37 37 H 1.09003 * 109.47021 * 180.02562 * 16 14 13 38 38 H 1.09001 * 109.47173 * 299.99701 * 16 14 13 39 39 H 1.09001 * 109.47311 * 59.99749 * 16 14 13 40 40 H 0.97002 * 119.99798 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1934 1.2130 0.0000 4 6 3.5539 1.2483 0.0057 5 6 4.2806 0.0454 0.0062 6 6 5.6860 0.0418 0.0125 7 6 6.3563 -1.1426 0.0133 8 6 5.6698 -2.3556 0.0084 9 6 4.3094 -2.3909 0.0032 10 6 3.5827 -1.1880 0.0022 11 6 2.1773 -1.1844 -0.0047 12 6 1.4166 -2.4852 -0.0106 13 7 1.1641 -2.9111 1.3725 14 6 0.4221 -4.1785 1.4060 15 1 -0.2782 -4.2117 0.5714 16 6 1.4036 -5.3470 1.2948 17 6 -0.3371 -4.2820 2.7035 18 1 -0.2751 -3.4857 3.4305 19 6 -1.1111 -5.3933 2.9627 20 7 -1.1870 -6.3627 2.0773 21 14 -2.0528 -5.5212 4.5708 22 1 -3.4033 -4.9271 4.4023 23 1 -2.1848 -6.9497 4.9548 24 1 -1.3188 -4.7888 5.6339 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3634 0.8900 0.5139 28 1 1.6373 2.1389 0.0004 29 1 4.0723 2.1957 0.0095 30 1 6.2313 0.9740 0.0167 31 1 7.4362 -1.1426 0.0178 32 1 6.2259 -3.2815 0.0087 33 1 3.7909 -3.3382 -0.0002 34 1 0.4668 -2.3484 -0.5278 35 1 2.0034 -3.2470 -0.5239 36 1 2.0261 -2.9826 1.8919 37 1 0.8530 -6.2875 1.3192 38 1 1.9528 -5.2722 0.3562 39 1 2.1041 -5.3139 2.1293 40 1 -1.7318 -7.1444 2.2594 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602863030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:23 Heat of formation + Delta-G solvation = 33.374569 kcal Electronic energy + Delta-G solvation = -20049.636889 eV Core-core repulsion = 17214.377881 eV Total energy + Delta-G solvation = -2835.259009 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.41415 -37.05388 -35.90288 -33.48999 -31.91153 -31.39542 -29.77559 -28.15832 -26.54372 -25.18215 -24.26583 -23.00112 -21.79476 -20.34549 -20.16302 -17.13279 -16.89161 -16.28038 -15.76848 -14.80386 -14.65985 -14.25525 -14.06585 -13.53836 -13.52598 -13.31078 -13.01579 -12.69513 -12.54808 -12.21492 -11.92592 -11.69159 -11.64545 -11.21136 -10.95892 -10.86114 -10.82994 -10.72292 -10.55621 -10.33031 -10.12536 -9.89420 -9.57131 -9.00486 -8.35307 -8.32889 -7.61118 -7.21945 -5.97711 -4.00786 0.70029 1.17870 2.21406 3.13328 3.33724 3.39882 3.44472 4.24404 4.46112 4.71617 4.92481 4.99502 5.06611 5.16166 5.28156 5.33973 5.44792 5.49143 5.52655 5.60515 5.82958 5.89683 5.92708 5.98974 6.11487 6.22166 6.31376 6.36089 6.44161 6.56742 6.61196 6.67897 6.71124 6.83553 6.97259 7.03690 7.09351 7.20462 7.35355 7.74005 7.89247 8.26999 8.53119 8.61297 9.06652 9.64603 11.09223 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022696 B = 0.004864 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.422869 B = 5755.059967 C = 6485.486637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.067 4.067 3 C -0.108 4.108 4 C -0.118 4.118 5 C -0.057 4.057 6 C -0.110 4.110 7 C -0.122 4.122 8 C -0.124 4.124 9 C -0.100 4.100 10 C -0.041 4.041 11 C -0.058 4.058 12 C 0.092 3.908 13 N -0.674 5.674 14 C 0.211 3.789 15 H 0.034 0.966 16 C -0.169 4.169 17 C -0.493 4.493 18 H 0.062 0.938 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.897 3.103 22 H -0.282 1.282 23 H -0.289 1.289 24 H -0.275 1.275 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.060 0.940 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.078 0.922 35 H 0.029 0.971 36 H 0.326 0.674 37 H 0.089 0.911 38 H 0.004 0.996 39 H 0.028 0.972 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.985 12.057 -6.249 17.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.068 4.068 3 C -0.126 4.126 4 C -0.137 4.137 5 C -0.057 4.057 6 C -0.128 4.128 7 C -0.140 4.140 8 C -0.142 4.142 9 C -0.118 4.118 10 C -0.041 4.041 11 C -0.059 4.059 12 C -0.037 4.037 13 N -0.304 5.304 14 C 0.104 3.896 15 H 0.052 0.948 16 C -0.229 4.229 17 C -0.532 4.532 18 H 0.081 0.919 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.725 3.275 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.200 1.200 25 H 0.082 0.918 26 H 0.111 0.889 27 H 0.079 0.921 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.146 0.854 34 H 0.096 0.904 35 H 0.047 0.953 36 H 0.143 0.857 37 H 0.108 0.892 38 H 0.023 0.977 39 H 0.047 0.953 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.304 12.250 -6.201 17.166 hybrid contribution 0.300 -0.807 0.593 1.045 sum 10.605 11.443 -5.608 16.579 Atomic orbital electron populations 1.20938 0.90908 1.04193 1.01854 1.19478 0.96568 0.92075 0.98657 1.20768 0.94241 0.97465 1.00125 1.20890 0.94225 0.96692 1.01848 1.18038 0.93398 0.92946 1.01272 1.20944 0.92927 0.98164 1.00787 1.20777 0.99690 0.92576 1.00941 1.20809 0.94470 0.97903 1.01007 1.21178 0.94281 0.97634 0.98711 1.17996 0.93041 0.92817 1.00234 1.19747 0.91784 0.95763 0.98578 1.20923 0.98133 0.91181 0.93426 1.60867 1.24919 1.35758 1.08884 1.19202 0.90949 0.81721 0.97756 0.94830 1.22444 0.99058 1.05540 0.95838 1.21147 1.26321 1.03352 1.02378 0.91942 1.24943 0.96880 0.95731 0.96952 1.69884 1.40574 1.08538 1.34785 0.86513 0.80215 0.76917 0.83824 1.20774 1.21459 1.19958 0.91815 0.88941 0.92087 0.86273 0.86065 0.86059 0.86435 0.86271 0.85423 0.90416 0.95333 0.85690 0.89218 0.97706 0.95317 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 9.13 36.00 0.33 -1.41 16 2 C -0.07 -1.02 5.84 -104.97 -0.61 -1.63 16 3 C -0.11 -1.42 9.58 -39.93 -0.38 -1.80 16 4 C -0.12 -1.51 9.77 -39.48 -0.39 -1.89 16 5 C -0.06 -0.80 5.74 -106.83 -0.61 -1.42 16 6 C -0.11 -1.33 9.77 -39.49 -0.39 -1.72 16 7 C -0.12 -1.42 9.95 -39.93 -0.40 -1.82 16 8 C -0.12 -1.59 9.95 -39.93 -0.40 -1.99 16 9 C -0.10 -1.50 9.28 -39.49 -0.37 -1.86 16 10 C -0.04 -0.64 5.74 -106.83 -0.61 -1.25 16 11 C -0.06 -0.96 5.40 -104.53 -0.56 -1.53 16 12 C 0.09 1.67 4.29 -4.97 -0.02 1.65 16 13 N -0.67 -14.22 6.12 -109.21 -0.67 -14.88 16 14 C 0.21 5.22 2.57 -68.86 -0.18 5.04 16 15 H 0.03 0.91 7.80 -51.93 -0.40 0.50 16 16 C -0.17 -4.02 8.94 37.16 0.33 -3.69 16 17 C -0.49 -13.54 8.84 -34.44 -0.30 -13.84 16 18 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 19 C 0.06 1.53 5.30 -17.82 -0.09 1.43 16 20 N -0.90 -25.52 11.32 55.43 0.63 -24.89 16 21 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.09 1.56 6.55 -51.93 -0.34 1.22 16 27 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 28 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 29 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.13 1.96 6.37 -52.49 -0.33 1.62 16 34 H 0.08 1.42 6.57 -51.93 -0.34 1.08 16 35 H 0.03 0.52 5.73 -51.93 -0.30 0.22 16 36 H 0.33 6.82 8.46 -39.29 -0.33 6.49 16 37 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 38 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 39 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 40 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 324.16 15.07 4.89 4.89 Total: -1.00 -28.85 324.16 -10.51 -39.36 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.68 Total: 6.79 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: -4.66 Total: -27.73 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: -0.04 Total: -39.78 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.85 -10.51 -39.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602863030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.734 kcal (2) G-P(sol) polarization free energy of solvation -28.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds