Wall clock time and date at job start Mon Mar 30 2020 00:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39378 * 119.50377 * 2 1 4 4 C 1.36094 * 120.98929 * 179.71882 * 3 2 1 5 5 C 1.40540 * 119.65364 * 0.26135 * 4 3 2 6 6 C 1.40544 * 121.28946 * 180.02562 * 5 4 3 7 7 C 1.36088 * 119.65578 * 179.97438 * 6 5 4 8 8 C 1.39379 * 120.98685 * 359.97438 * 7 6 5 9 9 C 1.36085 * 120.99106 * 359.97438 * 8 7 6 10 10 C 1.40540 * 119.65580 * 0.02562 * 9 8 7 11 11 C 1.36091 * 119.50906 * 180.22851 * 2 1 3 12 12 C 1.50699 * 120.17231 * 0.03087 * 11 2 1 13 13 N 1.46908 * 109.46992 * 270.22143 * 12 11 2 14 14 C 1.46902 * 110.99876 * 179.97438 * 13 12 11 15 15 H 1.09000 * 109.47259 * 325.01028 * 14 13 12 16 16 C 1.53006 * 109.46629 * 85.00241 * 14 13 12 17 17 C 1.50692 * 109.47068 * 204.99974 * 14 13 12 18 18 H 1.08005 * 120.00361 * 0.02562 * 17 14 13 19 19 C 1.37884 * 119.99969 * 180.02562 * 17 14 13 20 20 N 1.31516 * 119.99844 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 120.00037 * 180.02562 * 19 17 14 22 22 H 1.48496 * 109.47263 * 89.99678 * 21 19 17 23 23 H 1.48503 * 109.46937 * 209.99934 * 21 19 17 24 24 H 1.48504 * 109.47087 * 329.99079 * 21 19 17 25 25 H 1.09004 * 109.47144 * 89.99555 * 1 2 3 26 26 H 1.08997 * 109.47300 * 209.99562 * 1 2 3 27 27 H 1.09005 * 109.47215 * 329.99989 * 1 2 3 28 28 H 1.08002 * 119.50870 * 0.02562 * 3 2 1 29 29 H 1.07997 * 120.17304 * 180.23658 * 4 3 2 30 30 H 1.07997 * 120.17079 * 359.96699 * 6 5 4 31 31 H 1.07993 * 119.50654 * 179.97438 * 7 6 5 32 32 H 1.08001 * 119.50522 * 179.97438 * 8 7 6 33 33 H 1.08001 * 120.17815 * 180.02562 * 9 8 7 34 34 H 1.09003 * 109.47387 * 30.22169 * 12 11 2 35 35 H 1.09001 * 109.47111 * 150.22371 * 12 11 2 36 36 H 1.00894 * 111.00081 * 303.95526 * 13 12 11 37 37 H 1.09003 * 109.47021 * 180.02562 * 16 14 13 38 38 H 1.09001 * 109.47173 * 299.99701 * 16 14 13 39 39 H 1.09001 * 109.47311 * 59.99749 * 16 14 13 40 40 H 0.97002 * 119.99798 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1934 1.2130 0.0000 4 6 3.5539 1.2483 0.0057 5 6 4.2806 0.0454 0.0062 6 6 5.6860 0.0418 0.0125 7 6 6.3563 -1.1426 0.0133 8 6 5.6698 -2.3556 0.0084 9 6 4.3094 -2.3909 0.0032 10 6 3.5827 -1.1880 0.0022 11 6 2.1773 -1.1844 -0.0047 12 6 1.4166 -2.4852 -0.0106 13 7 1.1641 -2.9111 1.3725 14 6 0.4221 -4.1785 1.4060 15 1 -0.2782 -4.2117 0.5714 16 6 1.4036 -5.3470 1.2948 17 6 -0.3371 -4.2820 2.7035 18 1 -0.2751 -3.4857 3.4305 19 6 -1.1111 -5.3933 2.9627 20 7 -1.1870 -6.3627 2.0773 21 14 -2.0528 -5.5212 4.5708 22 1 -3.4033 -4.9271 4.4023 23 1 -2.1848 -6.9497 4.9548 24 1 -1.3188 -4.7888 5.6339 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3634 0.8900 0.5139 28 1 1.6373 2.1389 0.0004 29 1 4.0723 2.1957 0.0095 30 1 6.2313 0.9740 0.0167 31 1 7.4362 -1.1426 0.0178 32 1 6.2259 -3.2815 0.0087 33 1 3.7909 -3.3382 -0.0002 34 1 0.4668 -2.3484 -0.5278 35 1 2.0034 -3.2470 -0.5239 36 1 2.0261 -2.9826 1.8919 37 1 0.8530 -6.2875 1.3192 38 1 1.9528 -5.2722 0.3562 39 1 2.1041 -5.3139 2.1293 40 1 -1.7318 -7.1444 2.2594 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602863030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:23 Heat of formation + Delta-G solvation = 18.407861 kcal Electronic energy + Delta-G solvation = -20050.285894 eV Core-core repulsion = 17214.377881 eV Total energy + Delta-G solvation = -2835.908014 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.47569 -38.30570 -37.40975 -35.05901 -33.54724 -32.47109 -31.04932 -29.66670 -27.72373 -27.25445 -25.73048 -24.03905 -22.82281 -22.15807 -21.47797 -18.51905 -18.04329 -17.84091 -16.95156 -16.71605 -16.08763 -15.49915 -15.34772 -14.87566 -14.67903 -14.63523 -14.36085 -14.11261 -13.75819 -13.56705 -13.39082 -13.19875 -12.99642 -12.87736 -12.65957 -12.57709 -12.27270 -12.14338 -12.00403 -11.81592 -11.70793 -11.45444 -11.02861 -10.69908 -10.48670 -9.35774 -8.99466 -8.65576 -8.09375 -6.20668 -0.33255 0.14713 1.15456 1.43082 1.43376 1.54449 2.11885 2.44400 3.17798 3.18918 3.63775 3.83554 3.93132 4.02753 4.06996 4.13085 4.30715 4.36873 4.46583 4.57138 4.64973 4.67847 4.73443 4.83874 4.85816 4.86908 4.92117 5.07322 5.09790 5.25758 5.32624 5.37273 5.39357 5.46317 5.61342 5.67416 5.69053 5.79693 5.88191 6.00639 6.18337 6.25883 6.62744 6.75985 6.92917 7.49113 8.95879 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022696 B = 0.004864 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.422869 B = 5755.059967 C = 6485.486637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.073 4.073 3 C -0.120 4.120 4 C -0.105 4.105 5 C -0.078 4.078 6 C -0.105 4.105 7 C -0.126 4.126 8 C -0.118 4.118 9 C -0.132 4.132 10 C -0.057 4.057 11 C -0.089 4.089 12 C 0.104 3.896 13 N -0.673 5.673 14 C 0.217 3.783 15 H 0.003 0.997 16 C -0.155 4.155 17 C -0.513 4.513 18 H 0.052 0.948 19 C 0.010 3.990 20 N -0.922 5.922 21 Si 0.960 3.040 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.271 1.271 25 H 0.076 0.924 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.148 0.852 29 H 0.158 0.842 30 H 0.156 0.844 31 H 0.151 0.849 32 H 0.137 0.863 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.024 0.976 36 H 0.327 0.673 37 H 0.063 0.937 38 H 0.023 0.977 39 H 0.030 0.970 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.788 14.316 -5.905 20.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.073 4.073 3 C -0.137 4.137 4 C -0.123 4.123 5 C -0.078 4.078 6 C -0.122 4.122 7 C -0.143 4.143 8 C -0.136 4.136 9 C -0.150 4.150 10 C -0.058 4.058 11 C -0.090 4.090 12 C -0.025 4.025 13 N -0.302 5.302 14 C 0.109 3.891 15 H 0.021 0.979 16 C -0.215 4.215 17 C -0.551 4.551 18 H 0.071 0.929 19 C -0.188 4.188 20 N -0.563 5.563 21 Si 0.786 3.214 22 H -0.202 1.202 23 H -0.209 1.209 24 H -0.196 1.196 25 H 0.094 0.906 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.165 0.835 29 H 0.176 0.824 30 H 0.174 0.826 31 H 0.169 0.831 32 H 0.155 0.845 33 H 0.128 0.872 34 H 0.086 0.914 35 H 0.042 0.958 36 H 0.144 0.856 37 H 0.082 0.918 38 H 0.042 0.958 39 H 0.049 0.951 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.114 14.519 -5.865 19.797 hybrid contribution -0.167 -1.453 0.428 1.524 sum 11.947 13.065 -5.437 18.520 Atomic orbital electron populations 1.20887 0.90816 1.03365 1.02438 1.19721 0.96905 0.92690 0.98025 1.21035 0.94870 0.97487 1.00348 1.21330 0.94137 0.97603 0.99239 1.18401 0.94760 0.92770 1.01869 1.21360 0.92050 0.99837 0.98971 1.21166 1.01405 0.91788 0.99987 1.21132 0.93727 0.99619 0.99117 1.21147 0.95420 0.96929 1.01552 1.18163 0.92788 0.94038 1.00763 1.19591 0.92443 0.95006 1.01923 1.20764 0.97886 0.92516 0.91340 1.60730 1.24803 1.33616 1.11070 1.18952 0.90901 0.83692 0.95554 0.97868 1.22237 0.98606 1.03708 0.96907 1.21405 1.27235 1.03318 1.03185 0.92923 1.25697 0.97648 0.95349 1.00111 1.70008 1.41026 1.08881 1.36341 0.85521 0.78883 0.77028 0.79945 1.20246 1.20864 1.19553 0.90563 0.92321 0.90189 0.83460 0.82434 0.82635 0.83107 0.84512 0.87189 0.91447 0.95829 0.85641 0.91807 0.95828 0.95104 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.39 9.13 71.23 0.65 -2.74 16 2 C -0.07 -2.18 5.84 -20.09 -0.12 -2.30 16 3 C -0.12 -2.87 9.58 22.05 0.21 -2.66 16 4 C -0.11 -2.34 9.77 22.33 0.22 -2.12 16 5 C -0.08 -2.04 5.74 -21.30 -0.12 -2.17 16 6 C -0.10 -2.14 9.77 22.33 0.22 -1.93 16 7 C -0.13 -2.52 9.95 22.04 0.22 -2.30 16 8 C -0.12 -2.86 9.95 22.04 0.22 -2.64 16 9 C -0.13 -4.01 9.28 22.33 0.21 -3.81 16 10 C -0.06 -1.80 5.74 -21.30 -0.12 -1.93 16 11 C -0.09 -3.02 5.40 -19.80 -0.11 -3.13 16 12 C 0.10 3.99 4.29 85.55 0.37 4.35 16 13 N -0.67 -29.78 6.12 -499.44 -3.06 -32.84 16 14 C 0.22 11.25 2.57 44.17 0.11 11.37 16 15 H 0.00 0.19 7.80 -2.39 -0.02 0.17 16 16 C -0.16 -7.64 8.94 71.98 0.64 -7.00 16 17 C -0.51 -29.02 8.84 25.60 0.23 -28.79 16 18 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 19 C 0.01 0.56 5.30 84.66 0.45 1.01 16 20 N -0.92 -53.66 11.32 21.45 0.24 -53.42 16 21 Si 0.96 44.58 29.54 68.60 2.03 46.60 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 23 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 25 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.06 2.07 6.55 -2.39 -0.02 2.06 16 27 H 0.08 1.92 8.08 -2.38 -0.02 1.91 16 28 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 29 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 30 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 31 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 32 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 33 H 0.11 3.59 6.37 -2.91 -0.02 3.57 16 34 H 0.07 2.66 6.57 -2.39 -0.02 2.64 16 35 H 0.02 0.92 5.73 -2.39 -0.01 0.90 16 36 H 0.33 14.29 8.46 -89.70 -0.76 13.53 16 37 H 0.06 3.49 6.07 -2.39 -0.01 3.47 16 38 H 0.02 1.02 7.45 -2.39 -0.02 1.00 16 39 H 0.03 1.45 8.13 -2.39 -0.02 1.43 16 40 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -63.92 324.16 2.77 -61.15 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: 0.28 Total: 25.27 kcal Atomic # 6 Polarization: -50.05 SS G_CDS: 3.27 Total: -46.77 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -2.81 Total: -86.26 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -63.92 2.77 -61.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602863030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.562 kcal (2) G-P(sol) polarization free energy of solvation -63.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds