Wall clock time and date at job start Mon Mar 30 2020 00:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 120.00059 * 2 1 4 4 H 1.48506 * 109.46954 * 270.00508 * 3 2 1 5 5 H 1.48497 * 109.46974 * 29.99915 * 3 2 1 6 6 H 1.48501 * 109.47342 * 150.00487 * 3 2 1 7 7 C 1.37880 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99850 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99862 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46943 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47184 * 179.97438 * 10 9 7 12 12 C 1.46848 * 110.99762 * 170.00046 * 11 10 9 13 13 C 1.53032 * 109.53384 * 174.23161 * 12 11 10 14 14 C 1.53230 * 109.24141 * 59.34137 * 13 12 11 15 15 C 1.52716 * 109.35786 * 61.55680 * 14 13 12 16 16 C 1.53078 * 109.90105 * 191.40125 * 15 14 13 17 17 S 1.81753 * 108.84195 * 296.82271 * 16 15 14 18 18 C 1.81751 * 102.22129 * 53.17403 * 17 16 15 19 19 C 1.52712 * 109.38131 * 182.63109 * 14 13 12 20 20 C 1.53243 * 108.95115 * 302.09692 * 14 13 12 21 21 C 1.46843 * 110.99919 * 45.80073 * 11 10 9 22 22 H 0.96998 * 120.00168 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47197 * 60.00410 * 9 7 2 24 24 H 1.08996 * 109.47160 * 299.99996 * 9 7 2 25 25 H 1.09006 * 109.46978 * 60.00065 * 10 9 7 26 26 H 1.08996 * 109.46920 * 300.00430 * 10 9 7 27 27 H 1.08999 * 109.46359 * 54.20841 * 12 11 10 28 28 H 1.09003 * 109.45226 * 294.23943 * 12 11 10 29 29 H 1.09000 * 109.50355 * 299.41336 * 13 12 11 30 30 H 1.09000 * 109.54651 * 179.29930 * 13 12 11 31 31 H 1.09000 * 109.40168 * 311.53672 * 15 14 13 32 32 H 1.09001 * 109.39889 * 71.26543 * 15 14 13 33 33 H 1.08999 * 109.58010 * 56.62720 * 16 15 14 34 34 H 1.09003 * 109.58009 * 177.01698 * 16 15 14 35 35 H 1.09004 * 109.57034 * 187.00408 * 18 17 16 36 36 H 1.08998 * 109.57783 * 66.61688 * 18 17 16 37 37 H 1.08999 * 109.40525 * 288.73650 * 19 14 13 38 38 H 1.09007 * 109.39947 * 48.47790 * 19 14 13 39 39 H 1.08998 * 109.50983 * 177.82609 * 20 14 13 40 40 H 1.08998 * 109.50630 * 297.96467 * 20 14 13 41 41 H 1.09001 * 109.45488 * 305.77418 * 21 11 10 42 42 H 1.08999 * 109.45985 * 65.74631 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 7 5.4906 -2.6364 -0.0022 12 6 6.0170 -3.9865 0.2360 13 6 7.5399 -3.9758 0.0856 14 6 8.1400 -2.9912 1.0948 15 6 7.7996 -3.4481 2.5117 16 6 8.1405 -2.3409 3.5123 17 16 9.9326 -2.0412 3.4682 18 6 10.2314 -1.7551 1.6984 19 6 9.6538 -2.9290 0.9034 20 6 7.5404 -1.6020 0.8517 21 6 6.0176 -1.6803 0.9799 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6804 0.8889 24 1 3.8745 -0.6799 -0.8911 25 1 3.6580 -3.1505 -0.8908 26 1 3.6586 -3.1501 0.8892 27 1 5.5855 -4.6775 -0.4881 28 1 5.7540 -4.3060 1.2443 29 1 7.8036 -3.6664 -0.9257 30 1 7.9320 -4.9751 0.2746 31 1 6.7355 -3.6763 2.5727 32 1 8.3746 -4.3426 2.7515 33 1 7.6108 -1.4277 3.2410 34 1 7.8468 -2.6516 4.5150 35 1 11.3036 -1.6829 1.5161 36 1 9.7435 -0.8303 1.3904 37 1 10.1016 -3.8589 1.2539 38 1 9.8799 -2.7960 -0.1546 39 1 7.9322 -0.9022 1.5898 40 1 7.8043 -1.2618 -0.1496 41 1 5.5866 -0.6962 0.7959 42 1 5.7544 -2.0099 1.9849 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602949175.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:08 Heat of formation + Delta-G solvation = -11.351267 kcal Electronic energy + Delta-G solvation = -19675.157948 eV Core-core repulsion = 16973.403433 eV Total energy + Delta-G solvation = -2701.754515 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.28601 -36.45561 -33.17918 -31.80621 -31.60743 -30.47089 -29.09420 -25.80370 -23.99251 -23.34060 -23.16743 -21.19223 -19.81337 -18.28468 -17.08945 -16.80294 -15.68931 -15.23376 -14.74252 -14.55463 -14.47250 -14.13502 -13.86246 -13.66409 -13.37690 -13.07591 -12.72691 -12.62473 -12.28420 -11.95237 -11.87812 -11.63366 -11.32058 -11.25619 -11.07480 -11.00838 -10.40729 -10.27113 -10.20945 -10.07776 -9.80201 -9.75559 -9.67976 -9.15785 -8.55919 -7.87137 -7.74869 -6.07203 -4.05476 1.64524 2.38493 3.29212 3.36478 3.38927 4.29022 4.36964 4.42611 4.51479 4.56981 4.80335 4.93971 5.01522 5.17717 5.21590 5.27190 5.30306 5.34413 5.41856 5.52661 5.56009 5.63875 5.73469 5.75962 5.79283 5.84660 5.98410 6.03882 6.08771 6.14457 6.21294 6.27893 6.38951 6.43358 6.70996 7.11745 7.30817 7.54288 7.62654 7.82731 8.50282 8.96975 9.55049 11.06246 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.027004 B = 0.004789 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.619059 B = 5844.953837 C = 6327.023144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.068 3.932 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.014 4.014 10 C 0.071 3.929 11 N -0.539 5.539 12 C 0.053 3.947 13 C -0.100 4.100 14 C -0.065 4.065 15 C -0.115 4.115 16 C -0.082 4.082 17 S -0.279 6.279 18 C -0.082 4.082 19 C -0.108 4.108 20 C -0.114 4.114 21 C 0.049 3.951 22 H 0.263 0.737 23 H 0.018 0.982 24 H 0.020 0.980 25 H 0.068 0.932 26 H 0.025 0.975 27 H 0.071 0.929 28 H 0.031 0.969 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.702 -6.313 3.671 21.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.056 4.056 11 N -0.264 5.264 12 C -0.076 4.076 13 C -0.138 4.138 14 C -0.065 4.065 15 C -0.153 4.153 16 C -0.229 4.229 17 S -0.053 6.053 18 C -0.230 4.230 19 C -0.147 4.147 20 C -0.152 4.152 21 C -0.079 4.079 22 H 0.073 0.927 23 H 0.036 0.964 24 H 0.038 0.962 25 H 0.087 0.913 26 H 0.043 0.957 27 H 0.090 0.910 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 21.429 -6.030 4.064 22.629 hybrid contribution -0.871 0.667 -0.158 1.108 sum 20.558 -5.363 3.906 21.602 Atomic orbital electron populations 1.69910 1.06305 1.26924 1.51052 1.24996 0.94704 0.99124 0.94484 0.86770 0.80242 0.83602 0.78588 1.20192 1.21415 1.19124 1.21073 0.89366 0.94522 1.51033 0.91098 1.19708 0.96847 0.91897 0.96651 1.22110 0.83535 1.00186 0.99778 1.62059 1.09546 1.05702 1.49127 1.22098 0.94601 0.91470 0.99393 1.21609 0.95020 0.98101 0.99091 1.20633 0.94259 0.96635 0.94962 1.21881 1.02694 0.97487 0.93251 1.23564 0.93268 1.02843 1.03271 1.86775 1.12017 1.93914 1.12644 1.23519 1.04425 1.02049 0.92989 1.21775 0.94897 0.97768 1.00283 1.21904 0.95684 0.95451 1.02112 1.22193 0.93786 0.98351 0.93569 0.92697 0.96427 0.96184 0.91345 0.95668 0.91032 0.95084 0.90958 0.91868 0.90256 0.90930 0.89065 0.88132 0.88204 0.89277 0.90869 0.90720 0.91710 0.90954 0.89580 0.95133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -14.83 9.66 -34.44 -0.33 -15.16 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.01 -0.32 3.29 -27.88 -0.09 -0.41 16 10 C 0.07 1.41 5.21 -3.83 -0.02 1.39 16 11 N -0.54 -8.94 4.81 -234.69 -1.13 -10.07 16 12 C 0.05 0.71 5.18 -3.84 -0.02 0.69 16 13 C -0.10 -1.09 4.84 -26.60 -0.13 -1.22 16 14 C -0.06 -0.67 0.51 -154.56 -0.08 -0.75 16 15 C -0.11 -1.19 4.03 -26.84 -0.11 -1.30 16 16 C -0.08 -0.86 5.91 37.20 0.22 -0.64 16 17 S -0.28 -3.02 22.33 -107.50 -2.40 -5.42 16 18 C -0.08 -0.74 6.00 37.20 0.22 -0.52 16 19 C -0.11 -0.97 4.71 -26.83 -0.13 -1.09 16 20 C -0.11 -1.39 3.58 -26.60 -0.10 -1.49 16 21 C 0.05 0.76 4.46 -3.85 -0.02 0.74 16 22 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 23 H 0.02 0.42 5.27 -51.93 -0.27 0.14 16 24 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 25 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 26 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16 27 H 0.07 0.95 8.12 -51.93 -0.42 0.53 16 28 H 0.03 0.42 6.24 -51.93 -0.32 0.09 16 29 H 0.07 0.82 8.13 -51.93 -0.42 0.39 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.91 4.92 -51.93 -0.26 0.66 16 32 H 0.07 0.72 8.04 -51.93 -0.42 0.30 16 33 H 0.09 1.02 5.74 -51.93 -0.30 0.72 16 34 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.83 6.19 -51.93 -0.32 0.51 16 37 H 0.07 0.64 8.04 -51.93 -0.42 0.22 16 38 H 0.07 0.62 8.09 -51.92 -0.42 0.20 16 39 H 0.06 0.75 4.52 -51.93 -0.23 0.52 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.09 1.53 5.82 -51.93 -0.30 1.23 16 42 H 0.03 0.47 6.41 -51.93 -0.33 0.14 16 LS Contribution 310.35 15.07 4.68 4.68 Total: -1.00 -29.80 310.35 -10.37 -40.17 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -6.95 Total: -1.49 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: -0.67 Total: -17.86 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: -0.35 Total: -37.14 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Atomic # 16 Polarization: -3.02 SS G_CDS: -2.40 Total: -5.42 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.80 -10.37 -40.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602949175.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.823 kcal (2) G-P(sol) polarization free energy of solvation -29.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds