Wall clock time and date at job start Mon Mar 30 2020 00:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 120.00059 * 2 1 4 4 H 1.48506 * 109.46954 * 270.00508 * 3 2 1 5 5 H 1.48497 * 109.46974 * 29.99915 * 3 2 1 6 6 H 1.48501 * 109.47342 * 150.00487 * 3 2 1 7 7 C 1.37880 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99850 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99862 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46943 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47184 * 179.97438 * 10 9 7 12 12 C 1.46848 * 110.99762 * 170.00046 * 11 10 9 13 13 C 1.53032 * 109.53384 * 174.23161 * 12 11 10 14 14 C 1.53230 * 109.24141 * 59.34137 * 13 12 11 15 15 C 1.52716 * 109.35786 * 61.55680 * 14 13 12 16 16 C 1.53078 * 109.90105 * 191.40125 * 15 14 13 17 17 S 1.81753 * 108.84195 * 296.82271 * 16 15 14 18 18 C 1.81751 * 102.22129 * 53.17403 * 17 16 15 19 19 C 1.52712 * 109.38131 * 182.63109 * 14 13 12 20 20 C 1.53243 * 108.95115 * 302.09692 * 14 13 12 21 21 C 1.46843 * 110.99919 * 45.80073 * 11 10 9 22 22 H 0.96998 * 120.00168 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47197 * 60.00410 * 9 7 2 24 24 H 1.08996 * 109.47160 * 299.99996 * 9 7 2 25 25 H 1.09006 * 109.46978 * 60.00065 * 10 9 7 26 26 H 1.08996 * 109.46920 * 300.00430 * 10 9 7 27 27 H 1.08999 * 109.46359 * 54.20841 * 12 11 10 28 28 H 1.09003 * 109.45226 * 294.23943 * 12 11 10 29 29 H 1.09000 * 109.50355 * 299.41336 * 13 12 11 30 30 H 1.09000 * 109.54651 * 179.29930 * 13 12 11 31 31 H 1.09000 * 109.40168 * 311.53672 * 15 14 13 32 32 H 1.09001 * 109.39889 * 71.26543 * 15 14 13 33 33 H 1.08999 * 109.58010 * 56.62720 * 16 15 14 34 34 H 1.09003 * 109.58009 * 177.01698 * 16 15 14 35 35 H 1.09004 * 109.57034 * 187.00408 * 18 17 16 36 36 H 1.08998 * 109.57783 * 66.61688 * 18 17 16 37 37 H 1.08999 * 109.40525 * 288.73650 * 19 14 13 38 38 H 1.09007 * 109.39947 * 48.47790 * 19 14 13 39 39 H 1.08998 * 109.50983 * 177.82609 * 20 14 13 40 40 H 1.08998 * 109.50630 * 297.96467 * 20 14 13 41 41 H 1.09001 * 109.45488 * 305.77418 * 21 11 10 42 42 H 1.08999 * 109.45985 * 65.74631 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 7 5.4906 -2.6364 -0.0022 12 6 6.0170 -3.9865 0.2360 13 6 7.5399 -3.9758 0.0856 14 6 8.1400 -2.9912 1.0948 15 6 7.7996 -3.4481 2.5117 16 6 8.1405 -2.3409 3.5123 17 16 9.9326 -2.0412 3.4682 18 6 10.2314 -1.7551 1.6984 19 6 9.6538 -2.9290 0.9034 20 6 7.5404 -1.6020 0.8517 21 6 6.0176 -1.6803 0.9799 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6804 0.8889 24 1 3.8745 -0.6799 -0.8911 25 1 3.6580 -3.1505 -0.8908 26 1 3.6586 -3.1501 0.8892 27 1 5.5855 -4.6775 -0.4881 28 1 5.7540 -4.3060 1.2443 29 1 7.8036 -3.6664 -0.9257 30 1 7.9320 -4.9751 0.2746 31 1 6.7355 -3.6763 2.5727 32 1 8.3746 -4.3426 2.7515 33 1 7.6108 -1.4277 3.2410 34 1 7.8468 -2.6516 4.5150 35 1 11.3036 -1.6829 1.5161 36 1 9.7435 -0.8303 1.3904 37 1 10.1016 -3.8589 1.2539 38 1 9.8799 -2.7960 -0.1546 39 1 7.9322 -0.9022 1.5898 40 1 7.8043 -1.2618 -0.1496 41 1 5.5866 -0.6962 0.7959 42 1 5.7544 -2.0099 1.9849 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602949175.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:07 Heat of formation + Delta-G solvation = -29.025753 kcal Electronic energy + Delta-G solvation = -19675.924371 eV Core-core repulsion = 16973.403433 eV Total energy + Delta-G solvation = -2702.520938 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.151 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.28527 -37.72489 -35.13300 -33.10252 -32.56442 -31.68883 -30.50035 -27.11603 -25.34496 -24.51458 -24.16671 -22.31400 -21.41846 -19.23280 -19.08722 -17.74788 -16.85294 -16.46108 -16.18791 -15.68798 -15.61210 -15.49976 -14.94292 -14.84616 -14.73073 -14.26741 -14.11947 -13.68636 -13.53494 -13.05406 -13.02002 -12.89089 -12.69833 -12.54011 -12.12079 -12.10943 -11.98973 -11.77013 -11.70977 -11.45680 -11.21766 -11.04465 -10.91190 -10.76251 -10.57044 -9.14989 -8.64187 -8.32564 -6.36958 0.86985 1.33928 1.34785 1.46605 1.61755 2.33214 3.02422 3.03489 3.52398 3.68928 3.71008 4.02941 4.05898 4.17647 4.25624 4.27498 4.34296 4.40657 4.46047 4.50673 4.55853 4.62981 4.67493 4.75618 4.84476 4.88695 4.94850 4.98112 5.01127 5.05042 5.11352 5.18947 5.26560 5.27540 5.37849 5.42901 5.49713 5.60310 6.12430 6.26681 6.33501 6.70944 7.27787 8.84271 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.027004 B = 0.004789 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.619059 B = 5844.953837 C = 6327.023144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.008 3.992 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.248 1.248 7 C -0.534 4.534 8 H 0.031 0.969 9 C -0.004 4.004 10 C 0.082 3.918 11 N -0.541 5.541 12 C 0.049 3.951 13 C -0.093 4.093 14 C -0.060 4.060 15 C -0.110 4.110 16 C -0.078 4.078 17 S -0.304 6.304 18 C -0.075 4.075 19 C -0.102 4.102 20 C -0.105 4.105 21 C 0.048 3.952 22 H 0.267 0.733 23 H 0.023 0.977 24 H 0.019 0.981 25 H 0.060 0.940 26 H 0.015 0.985 27 H 0.072 0.928 28 H 0.032 0.968 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.746 -6.066 3.546 24.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.189 4.189 3 Si 0.773 3.227 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.171 1.171 7 C -0.573 4.573 8 H 0.050 0.950 9 C -0.042 4.042 10 C -0.046 4.046 11 N -0.266 5.266 12 C -0.079 4.079 13 C -0.131 4.131 14 C -0.060 4.060 15 C -0.149 4.149 16 C -0.226 4.226 17 S -0.079 6.079 18 C -0.223 4.223 19 C -0.140 4.140 20 C -0.142 4.142 21 C -0.080 4.080 22 H 0.076 0.924 23 H 0.041 0.959 24 H 0.038 0.962 25 H 0.079 0.921 26 H 0.034 0.966 27 H 0.091 0.909 28 H 0.050 0.950 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.122 0.878 35 H 0.134 0.866 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 24.497 -5.802 3.941 25.481 hybrid contribution -1.874 0.510 -0.109 1.945 sum 22.622 -5.293 3.832 23.547 Atomic orbital electron populations 1.70059 1.08275 1.28233 1.52466 1.25962 0.95570 1.03395 0.93959 0.85665 0.79452 0.78297 0.79274 1.19139 1.20834 1.17117 1.21415 0.91945 0.93197 1.50717 0.95027 1.19569 0.93611 0.94404 0.96598 1.21808 0.86240 0.97536 0.99006 1.62044 1.06926 1.07828 1.49845 1.22225 0.96602 0.89530 0.99497 1.21579 0.92647 0.99540 0.99285 1.20606 0.95461 0.95212 0.94765 1.21834 1.01965 0.97788 0.93264 1.23516 0.92987 1.02448 1.03608 1.86895 1.12169 1.93974 1.14838 1.23575 1.05484 1.02029 0.91237 1.21720 0.93194 0.98042 1.01069 1.21830 0.93026 0.97016 1.02357 1.22193 0.96071 0.96667 0.93054 0.92401 0.95921 0.96224 0.92111 0.96646 0.90924 0.95006 0.90809 0.89606 0.91552 0.89980 0.89979 0.87781 0.86618 0.89429 0.90076 0.89385 0.90957 0.90964 0.91990 0.95429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.04 13.96 21.45 0.30 -59.74 16 2 C 0.01 0.48 5.47 84.66 0.46 0.95 16 3 Si 0.95 44.69 27.47 68.60 1.88 46.57 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.25 -10.80 6.54 99.48 0.65 -10.15 16 7 C -0.53 -31.26 9.66 25.60 0.25 -31.01 16 8 H 0.03 2.03 7.99 -2.92 -0.02 2.00 16 9 C 0.00 -0.20 3.29 29.85 0.10 -0.10 16 10 C 0.08 3.30 5.21 86.30 0.45 3.75 16 11 N -0.54 -17.44 4.81 -896.42 -4.31 -21.75 16 12 C 0.05 1.24 5.18 86.32 0.45 1.69 16 13 C -0.09 -1.74 4.84 30.68 0.15 -1.59 16 14 C -0.06 -1.08 0.51 -52.21 -0.03 -1.10 16 15 C -0.11 -2.03 4.03 30.53 0.12 -1.91 16 16 C -0.08 -1.50 5.91 72.01 0.43 -1.07 16 17 S -0.30 -5.92 22.33 -56.49 -1.26 -7.18 16 18 C -0.08 -1.13 6.00 72.01 0.43 -0.70 16 19 C -0.10 -1.43 4.71 30.53 0.14 -1.28 16 20 C -0.10 -2.32 3.58 30.68 0.11 -2.21 16 21 C 0.05 1.44 4.46 86.32 0.39 1.82 16 22 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 23 H 0.02 1.06 5.27 -2.39 -0.01 1.05 16 24 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 25 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 26 H 0.02 0.64 8.08 -2.39 -0.02 0.62 16 27 H 0.07 1.82 8.12 -2.39 -0.02 1.80 16 28 H 0.03 0.81 6.24 -2.39 -0.01 0.80 16 29 H 0.07 1.41 8.13 -2.39 -0.02 1.39 16 30 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.42 4.92 -2.39 -0.01 1.41 16 32 H 0.08 1.39 8.04 -2.39 -0.02 1.37 16 33 H 0.08 1.72 5.74 -2.39 -0.01 1.71 16 34 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 1.37 6.19 -2.39 -0.01 1.35 16 37 H 0.08 1.08 8.04 -2.39 -0.02 1.06 16 38 H 0.09 1.07 8.09 -2.38 -0.02 1.05 16 39 H 0.07 1.52 4.52 -2.39 -0.01 1.51 16 40 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.06 2.14 5.82 -2.39 -0.01 2.13 16 42 H 0.03 0.84 6.41 -2.39 -0.02 0.82 16 Total: -1.00 -65.13 310.35 0.99 -64.14 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 0.93 Total: 10.75 kcal Atomic # 6 Polarization: -36.23 SS G_CDS: 3.45 Total: -32.78 kcal Atomic # 7 Polarization: -77.48 SS G_CDS: -4.01 Total: -81.49 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Atomic # 16 Polarization: -5.92 SS G_CDS: -1.26 Total: -7.18 kcal Total: -65.13 0.99 -64.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602949175.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.112 kcal (2) G-P(sol) polarization free energy of solvation -65.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds